Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002089

Physical Location & Seq

Genomic Coordinates Reverse (-)

18557984 .. 18560391

Gene Structure 2408 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G50110.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1071 bp

ATGGCTCCTTCTTCATCACCTCTTCGTACTACAAGTGAAACAGATGAAAAATATGCGAATGTCAAATGGGAAGAGCTTGGATTCGCTCTGACTCCAATAGATTATATGTATGTAGCCAAATGCAGACAAGGAGAGAGCTTTACACAAGGGAAGATTGTTCCTTATGGCGACATTTCAATTAGCCCTTGTTCTCCGATTCTCAATTACGGCCAGGGACTATTTGAAGGTCTCAAAGCTTACAGAACAGAAGACGACCGGATTAGGATTTTCCGGCCTGACCAAAACGCTCTTCGCATGCAAACTGGTGCGGAGAGGCTTTGTATGACACCTCCTACTCTAGAACAATTTGTCGAGGCAGTTAAGCAAACTGTGCTTGCCAACAAGAAATGGGTTCCTCCTCCGGGTAAAGGAACTCTGTATATAAGGCCTCTGCTACTAGGGAGTGGTGCTACCCTTGGAGTAGCTCCAGCACCTGAATACACTTTTCTCATATATGCATCTCCCGTAGGAGATTACCATAAGGTAAGCTCAGGCTTGAACCTCAAAGTTGATCATAAGTATCACCGAGCCCATTCAGGTGGAACGGGGGGTGTCAAGAGCTGCACAAACTATTCTCCAGTTGTGAAATCGTTACTCGAAGCAAAGTCAGCGGGTTTCTCTGATGTCCTGTTCCTGGATGCAGCAACTGGTAGAAACATCGAAGAGCTTACTGCTTGTAACATCTTCATTGTCAAGGGAAACATTGTATCCACCCCACCAACTTCAGGAACCATTTTACCTGGAGTCACGAGGAAAAGCATAAGTGAGCTGGCTCATGATATTGGCTACCAGGTCGAAGAACGCGATGTATCTGTGGATGAGCTACTAGAGGCAGAAGAAGTTTTCTGCACAGGGACTGCAGTGGTCGTTAAAGCTGTTGAAACTGTGACCTTCCATGACAAAAAGGTAAAATACAGGACAGGAGAAGCAGCATTGTCTACGAAGCTTCACTCGATGTTGACCAATATTCAGATGGGAGTTGTTGAAGATAAGAAAGGTTGGATGGTGGACATTGATCCTTGTCAAGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000096 GO:0000097 GO:0003674 GO:0003824 GO:0004084 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006520 GO:0006555 GO:0006790 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0008483 GO:0008652 GO:0009058 GO:0009066 GO:0009067 GO:0009086 GO:0009314 GO:0009416 GO:0009611 GO:0009628 GO:0009987 GO:0010326 GO:0016053 GO:0016143 GO:0016144 GO:0016740 GO:0016769 GO:0017144 GO:0019748 GO:0019752 GO:0019757 GO:0019758 GO:0019760 GO:0019761 GO:0033321 GO:0033506 GO:0043094 GO:0043102 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044272 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0044550 GO:0046394 GO:0050896 GO:0052654 GO:0052655 GO:0052656 GO:0071265 GO:0071267 GO:0071704 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

ko00270 ko00280 ko00290 ko00770 ko00966 ko01100 ko01110 ko01130 ko01210 ko01230 map00270 map00280 map00290 map00770 map00966 map01100 map01110 map01130 map01210 map01230

Pfam Domains

Protein Families

Aminotran_4

Protein Analysis

356

Amino Acids

38.86

Weight (kDa)

6.2

Isoelectric Point (pI)

42.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aminotran_4	PF01063	37 - 268	1.1e-36	Amino-transferase class IV

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002089)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50090 AT1G50110 AT1G50110
fragaria_vesca	FvH4_2g02760 FvH4_2g02870 FvH4_2g02870
malus_domestica	MD05G1110500.v1.1 MD10G1114000.v1.1
prunus_persica	Prupe.8G155300_v2.0.a1 Prupe.8G155500_v2.0.a1
pyrus_communis	pycom05g10650
rosa_chinensis	RchiOBHm_Chr6g0247221 RchiOBHm_Chr6g0247281 RchiOBHm_Chr6g0247341
rosa_laevigata	RLG00000015207 RLG00000015210
rosa_multiflora	Rmu_sc0000745.1_g000026 Rmu_sc0003226.1_g000006 Rmu_sc0004368.1_g000005 Rmu_sc0004368.1_g000016
rosa_roxburghii	Rroxscaffold_180G00433530 Rroxscaffold_180G00433590 Rroxscaffold_7G00214080 Rroxscaffold_7G00214230
rosa_rugosa	Rorug05G0524400 Rorug05G0524700 Rorug05G0524700 Rorug05G0524800 Rorug05G0524900 Rorug05G0525000 Rorug05G0525100 Rorug05G0525200 Rorug05G0525300
rosa_samantha	Rh6AG038600 Rh6AG039200 Rh6AG039600 Rh6AG040300 Rh6CG034300 Rh6CG034700 Rh6DG031900 Rh6DG032500
rosa_wichuraiana	Rw6G003320 Rw6G003390 Rw6G003460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	977
AccII	CGCG	1 cut(s)	843
AciI	CCGC	2 cut(s)	308, 650
AclWI	GGATC	1 cut(s)	1049
AcoI	YGGCCR	1 cut(s)	208
AcuI	CTGAAG	1 cut(s)	747
AfaI	GTAC	1 cut(s)	28
AfiI	CCNNNNNNNGG	5 cut(s)	401, 407, 673, 764, 1064
AgsI	TTSAA	5 cut(s)	177, 224, 538, 920, 1025
AjnI	CCWGG	4 cut(s)	210, 672, 778, 828
AjuI	GAANNNNNNNTTGG	2 cut(s)	273, 305
Alw26I	GTCTC	1 cut(s)	233
AlwI	GGATC	1 cut(s)	1049
AlwNI	CAGNNNCTG	3 cut(s)	473, 686, 896
AoxI	GGCC	3 cut(s)	208, 272, 425
ApeKI	GCWGC	3 cut(s)	600, 680, 968
AsuC2I	CCSGG	1 cut(s)	402
AsuHPI	GGTGA	2 cut(s)	9, 554
BanII	GRGCYC	1 cut(s)	571
BauI	CACGAG	1 cut(s)	787
BbsI	GAAGAC	1 cut(s)	255
BbvI	GCAGC	3 cut(s)	587, 692, 980
BccI	CCATC	2 cut(s)	1006, 1036
BceAI	ACGGC	1 cut(s)	223
BciT130I	CCWGG	4 cut(s)	212, 674, 780, 830
BciVI	GTATCC	1 cut(s)	757
BclI	TGATCA	1 cut(s)	550
BcnI	CCSGG	1 cut(s)	402
BcoDI	GTCTC	1 cut(s)	233
BfaI	CTAG	3 cut(s)	338, 437, 866
BfmI	CTRYAG	1 cut(s)	897
BfuI	GTATCC	1 cut(s)	757
BisI	GCNGC	3 cut(s)	601, 681, 969
BlsI	GCNGC	3 cut(s)	602, 682, 970
Bme1390I	CCNGG	5 cut(s)	212, 402, 674, 780, 830
BmiI	GGNNCC	3 cut(s)	6, 393, 769
BmrFI	CCNGG	5 cut(s)	212, 402, 674, 780, 830
BmsI	GCATC	2 cut(s)	506, 667
BpiI	GAAGAC	1 cut(s)	255
BpmI	CTGGAG	3 cut(s)	450, 600, 801
Bpu10I	CCTNAGC	1 cut(s)	529
BpuMI	CCSGG	1 cut(s)	402
BsaI	GGTCTC	1 cut(s)	233
BsaJI	CCNNGG	2 cut(s)	211, 454
BsaWI	WCCGGW	1 cut(s)	255
Bsc4I	CCNNNNNNNGG	5 cut(s)	401, 407, 673, 764, 1064
Bse1I	ACTGG	3 cut(s)	307, 617, 691
BseBI	CCWGG	4 cut(s)	212, 674, 780, 830
BseDI	CCNNGG	2 cut(s)	211, 454
BseGI	GGATG	3 cut(s)	682, 862, 1047
BseLI	CCNNNNNNNGG	5 cut(s)	401, 407, 673, 764, 1064
BseMII	CTCAG	1 cut(s)	543
BseNI	ACTGG	3 cut(s)	307, 617, 691
BseRI	GAGGAG	1 cut(s)	387
BseXI	GCAGC	3 cut(s)	587, 692, 980
BsgI	GTGCAG	2 cut(s)	586, 871
Bsh1236I	CGCG	1 cut(s)	843
Bsh1285I	CGRYCG	1 cut(s)	256
BshFI	GGCC	3 cut(s)	210, 274, 427
BsiEI	CGRYCG	1 cut(s)	256
BsiSI	CCGG	3 cut(s)	256, 271, 401
BslFI	GGGAC	2 cut(s)	228, 907
BslI	CCNNNNNNNGG	5 cut(s)	401, 407, 673, 764, 1064
BsmAI	GTCTC	1 cut(s)	233
BsmFI	GGGAC	2 cut(s)	228, 907
BsnI	GGCC	3 cut(s)	210, 274, 427
Bso31I	GGTCTC	1 cut(s)	233
Bsp1286I	GDGCHC	1 cut(s)	571
Bsp143I	GATC	2 cut(s)	550, 1054
BspACI	CCGC	2 cut(s)	308, 650
BspANI	GGCC	3 cut(s)	210, 274, 427
BspCNI	CTCAG	1 cut(s)	542
BspFNI	CGCG	1 cut(s)	843
BspHI	TCATGA	1 cut(s)	814
BspLI	GGNNCC	3 cut(s)	6, 393, 769
BspMAI	CTGCAG	1 cut(s)	901
BspPI	GGATC	1 cut(s)	1049
BspQI	GCTCTTC	3 cut(s)	66, 294, 696
BspTNI	GGTCTC	1 cut(s)	233
BsrI	ACTGG	3 cut(s)	307, 617, 691
BssECI	CCNNGG	2 cut(s)	211, 454
BssMI	GATC	2 cut(s)	550, 1054
BssSI	CACGAG	1 cut(s)	787
BssT1I	CCWWGG	1 cut(s)	454
Bst2BI	CACGAG	1 cut(s)	787
Bst2UI	CCWGG	4 cut(s)	212, 674, 780, 830
Bst4CI	ACNGT	2 cut(s)	370, 925
Bst6I	CTCTTC	4 cut(s)	27, 66, 294, 696
BstAPI	GCANNNNNTGC	1 cut(s)	370
BstC8I	GCNNGC	3 cut(s)	296, 375, 810
BstDEI	CTNAG	1 cut(s)	529
BstENI	CCTNNNNNAGG	1 cut(s)	1062
BstF5I	GGATG	3 cut(s)	682, 862, 1047
BstFNI	CGCG	1 cut(s)	843
BstKTI	GATC	2 cut(s)	553, 1057
BstMAI	GTCTC	1 cut(s)	233
BstMBI	GATC	2 cut(s)	550, 1054
BstMCI	CGRYCG	1 cut(s)	256
BstMWI	GCNNNNNNNGC	2 cut(s)	370, 647
BstNI	CCWGG	4 cut(s)	212, 674, 780, 830
BstNSI	RCATGY	1 cut(s)	298
BstSCI	CCNGG	5 cut(s)	210, 400, 672, 778, 828
BstSFI	CTRYAG	1 cut(s)	897
BstUI	CGCG	1 cut(s)	843
BstV1I	GCAGC	3 cut(s)	587, 692, 980
BstV2I	GAAGAC	1 cut(s)	255
BstXI	CCANNNNNNTGG	1 cut(s)	578
BsuI	GTATCC	1 cut(s)	757
BsuRI	GGCC	3 cut(s)	210, 274, 427
BtgZI	GCGATG	1 cut(s)	858
BtsCI	GGATG	3 cut(s)	682, 862, 1047
BtsI	GCAGTG	1 cut(s)	906
BtsIMutI	CAGTG	1 cut(s)	906
Cac8I	GCNNGC	3 cut(s)	296, 375, 810
CaiI	CAGNNNCTG	3 cut(s)	473, 686, 896
CciI	TCATGA	1 cut(s)	814
CsiI	ACCWGGT	1 cut(s)	828
Csp6I	GTAC	1 cut(s)	27
CviAII	CATG	3 cut(s)	295, 815, 935
CviQI	GTAC	1 cut(s)	27
DdeI	CTNAG	1 cut(s)	529
DpnI	GATC	2 cut(s)	552, 1056
DpnII	GATC	2 cut(s)	550, 1054
EaeI	YGGCCR	1 cut(s)	208
Eam1104I	CTCTTC	4 cut(s)	27, 66, 294, 696
EarI	CTCTTC	4 cut(s)	27, 66, 294, 696
Eco130I	CCWWGG	1 cut(s)	454
Eco147I	AGGCCT	1 cut(s)	427
Eco24I	GRGCYC	1 cut(s)	571
Eco31I	GGTCTC	1 cut(s)	233
Eco57I	CTGAAG	1 cut(s)	747
EcoNI	CCTNNNNNAGG	1 cut(s)	1062
EcoRII	CCWGG	4 cut(s)	210, 672, 778, 828
EcoT14I	CCWWGG	1 cut(s)	454
EcoT22I	ATGCAT	1 cut(s)	499
EcoT38I	GRGCYC	1 cut(s)	571
ErhI	CCWWGG	1 cut(s)	454
FaeI	CATG	3 cut(s)	298, 818, 938
FaqI	GGGAC	2 cut(s)	228, 907
FatI	CATG	3 cut(s)	294, 814, 934
FauI	CCCGC	1 cut(s)	643
FbaI	TGATCA	1 cut(s)	550
FblI	GTMKAC	1 cut(s)	977
Fnu4HI	GCNGC	3 cut(s)	601, 681, 969
FokI	GGATG	3 cut(s)	689, 869, 1054
FriOI	GRGCYC	1 cut(s)	571
Fsp4HI	GCNGC	3 cut(s)	601, 681, 969
FspBI	CTAG	3 cut(s)	338, 437, 866
GluI	GCNGC	3 cut(s)	601, 681, 969
GsuI	CTGGAG	3 cut(s)	450, 600, 801
HaeIII	GGCC	3 cut(s)	210, 274, 427
HapII	CCGG	3 cut(s)	256, 271, 401
Hin1II	CATG	3 cut(s)	298, 818, 938
HincII	GTYRAC	1 cut(s)	999
HindII	GTYRAC	1 cut(s)	999
HindIII	AAGCTT	2 cut(s)	234, 983
HinfI	GANTC	4 cut(s)	81, 91, 196, 783
HpaII	CCGG	3 cut(s)	256, 271, 401
HphI	GGTGA	2 cut(s)	9, 554
Hpy166II	GTNNAC	3 cut(s)	978, 999, 1048
Hpy188I	TCNGA	4 cut(s)	90, 195, 661, 1011
Hpy188III	TCNNGA	5 cut(s)	338, 595, 765, 787, 815
Hpy8I	GTNNAC	3 cut(s)	978, 999, 1048
HpyAV	CCTTC	3 cut(s)	18, 218, 940
HpyCH4III	ACNGT	2 cut(s)	370, 925
HpyCH4V	TGCA	7 cut(s)	123, 298, 497, 603, 680, 888, 899
HpyF10VI	GCNNNNNNNGC	2 cut(s)	370, 647
HpyF3I	CTNAG	1 cut(s)	529
Hsp92II	CATG	3 cut(s)	298, 818, 938
Ksp22I	TGATCA	1 cut(s)	550
Kzo9I	GATC	2 cut(s)	550, 1054
LguI	GCTCTTC	3 cut(s)	66, 294, 696
LmnI	GCTCC	2 cut(s)	10, 469
Lsp1109I	GCAGC	3 cut(s)	587, 692, 980
LweI	GCATC	2 cut(s)	506, 667
MabI	ACCWGGT	1 cut(s)	828
MaeI	CTAG	3 cut(s)	338, 437, 866
MaeIII	GTNAC	4 cut(s)	630, 716, 784, 925
MalI	GATC	2 cut(s)	552, 1056
MboI	GATC	2 cut(s)	550, 1054
MhlI	GDGCHC	1 cut(s)	571
MluCI	AATT	3 cut(s)	177, 202, 344
MlyI	GAGTC	2 cut(s)	85, 792
MmeI	TCCRAC	1 cut(s)	1019
Mph1103I	ATGCAT	1 cut(s)	499
MseI	TTAA	2 cut(s)	360, 909
MslI	CAYNNNNRTG	1 cut(s)	576
MspA1I	CMGCKG	1 cut(s)	650
MspI	CCGG	3 cut(s)	256, 271, 401
MspR9I	CCNGG	5 cut(s)	212, 402, 674, 780, 830
MvaI	CCWGG	4 cut(s)	212, 674, 780, 830
MvnI	CGCG	1 cut(s)	843
MwoI	GCNNNNNNNGC	2 cut(s)	370, 647
NciI	CCSGG	1 cut(s)	402
NdeII	GATC	2 cut(s)	550, 1054
NlaIII	CATG	3 cut(s)	298, 818, 938
NlaIV	GGNNCC	3 cut(s)	6, 393, 769
NmuCI	GTSAC	2 cut(s)	784, 925
NsiI	ATGCAT	1 cut(s)	499
NspI	RCATGY	1 cut(s)	298
PaeI	GCATGC	1 cut(s)	298
PagI	TCATGA	1 cut(s)	814
PceI	AGGCCT	1 cut(s)	427
PciSI	GCTCTTC	3 cut(s)	66, 294, 696
PcsI	WCGNNNNNNNCGW	1 cut(s)	840
PfeI	GAWTC	2 cut(s)	81, 196
PfoI	TCCNGGA	1 cut(s)	672
PkrI	GCNGC	3 cut(s)	602, 682, 970
PleI	GAGTC	2 cut(s)	85, 791
PpsI	GAGTC	2 cut(s)	85, 791
Psp6I	CCWGG	4 cut(s)	210, 672, 778, 828
PspGI	CCWGG	4 cut(s)	210, 672, 778, 828
PspN4I	GGNNCC	3 cut(s)	6, 393, 769
PstI	CTGCAG	1 cut(s)	901
PstNI	CAGNNNCTG	3 cut(s)	473, 686, 896
RsaI	GTAC	1 cut(s)	28
RsaNI	GTAC	1 cut(s)	27
RseI	CAYNNNNRTG	1 cut(s)	576
SapI	GCTCTTC	3 cut(s)	66, 294, 696
SaqAI	TTAA	2 cut(s)	360, 909
SatI	GCNGC	3 cut(s)	601, 681, 969
Sau3AI	GATC	2 cut(s)	550, 1054
SchI	GAGTC	2 cut(s)	85, 792
ScrFI	CCNGG	5 cut(s)	212, 402, 674, 780, 830
SduI	GDGCHC	1 cut(s)	571
SexAI	ACCWGGT	1 cut(s)	828
SfaNI	GCATC	2 cut(s)	506, 667
SfcI	CTRYAG	1 cut(s)	897
SmiMI	CAYNNNNRTG	1 cut(s)	576
SphI	GCATGC	1 cut(s)	298
Sse9I	AATT	3 cut(s)	177, 202, 344
SseBI	AGGCCT	1 cut(s)	427
SsiI	CCGC	2 cut(s)	308, 650
SspI	AATATT	1 cut(s)	1006
SspMI	CTAG	3 cut(s)	338, 437, 866
StuI	AGGCCT	1 cut(s)	427
StyD4I	CCNGG	5 cut(s)	210, 400, 672, 778, 828
StyI	CCWWGG	1 cut(s)	454
TaaI	ACNGT	2 cut(s)	370, 925
TaqI	TCGA	5 cut(s)	351, 636, 699, 834, 992
TasI	AATT	3 cut(s)	177, 202, 344
TfiI	GAWTC	2 cut(s)	81, 196
Tru1I	TTAA	2 cut(s)	360, 909
Tru9I	TTAA	2 cut(s)	360, 909
TscAI	CASTG	1 cut(s)	906
TseFI	GTSAC	2 cut(s)	784, 925
TseI	GCWGC	3 cut(s)	600, 680, 968
Tsp45I	GTSAC	2 cut(s)	784, 925
TspDTI	ATGAA	2 cut(s)	60, 715
TspRI	CASTG	1 cut(s)	906
XagI	CCTNNNNNAGG	1 cut(s)	1062
XbaI	TCTAGA	1 cut(s)	337
XceI	RCATGY	1 cut(s)	298
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1009
XmiI	GTMKAC	1 cut(s)	977
XspI	CTAG	3 cut(s)	338, 437, 866
Zsp2I	ATGCAT	1 cut(s)	499

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.