Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003226.1

Orthogroup ID

OG0002089

Physical Location & Seq

Genomic Coordinates Reverse (-)

21646 .. 23621

Gene Structure 1976 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003226.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 819 bp

atgctattccgaccagaagaaaatgctctaagaatgaagatgggtgcagagaggatgtgcatgccatctccatccgttgagcaatttgttgatgctgtgaagcaaactgtcctcgccaataagcgttgggtaccacctccaggaaaaggatcactatacgtcaggcctttgctcatgggaagtggatctgttcttaatgttgggcccgcaccagagtacacactcctgatatatgcttctccggttggtaattcttctccagttggtaattaccacaagggaagggcatcccttaacttgtatgttgaggataaactccgtagagctactcccggtggaactggagggataaagtctatcaccaattacgcacccgtttaccaggcacaaaagcaagcaagagcaaaaggattctctgatgttttatacctagattctgtaactggtaaaaacattgaggagatttcagctgctaacattttcattgtgaaggataatgttgtatccactccagcattagtacatggaactattcttcccggagttactcgtaaaagcataatggagattgcccttgatttaggttaccagatggaggagcgtctaattccgctagaggatttgcttgaagctgatgaagctttctgcaccggaactgctgtaactgtcaaccctattggtgcagtaacttgtgacactaaaagggtggagtacaaaacaggggagggaacagtatctcagaaactgtatgaaacactaacaggaatccaaactggtcgtctcgaggacaagaagggatggaccctggaggtcaactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00270 ko00280 ko00290 ko00770 ko01100 ko01110 ko01130 ko01210 ko01230 map00270 map00280 map00290 map00770 map01100 map01110 map01130 map01210 map01230

Pfam Domains

Protein Families

Aminotran_4

Protein Analysis

272

Amino Acids

29.57

Weight (kDa)

7.64

Isoelectric Point (pI)

46.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002089)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50090 AT1G50110 AT1G50110
fragaria_vesca	FvH4_2g02760 FvH4_2g02870 FvH4_2g02870
malus_domestica	MD05G1110500.v1.1 MD10G1114000.v1.1
prunus_persica	Prupe.8G155300_v2.0.a1 Prupe.8G155500_v2.0.a1
pyrus_communis	pycom05g10650
rosa_chinensis	RchiOBHm_Chr6g0247221 RchiOBHm_Chr6g0247281 RchiOBHm_Chr6g0247341
rosa_laevigata	RLG00000015207 RLG00000015210
rosa_multiflora	Rmu_sc0000745.1_g000026 Rmu_sc0003226.1_g000006 Rmu_sc0004368.1_g000005 Rmu_sc0004368.1_g000016
rosa_roxburghii	Rroxscaffold_180G00433530 Rroxscaffold_180G00433590 Rroxscaffold_7G00214080 Rroxscaffold_7G00214230
rosa_rugosa	Rorug05G0524400 Rorug05G0524700 Rorug05G0524700 Rorug05G0524800 Rorug05G0524900 Rorug05G0525000 Rorug05G0525100 Rorug05G0525200 Rorug05G0525300
rosa_samantha	Rh6AG038600 Rh6AG039200 Rh6AG039600 Rh6AG040300 Rh6CG034300 Rh6CG034700 Rh6DG031900 Rh6DG032500
rosa_wichuraiana	Rw6G003320 Rw6G003390 Rw6G003460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	130
AccB1I	GGYRCC	1 cut(s)	130
AciI	CCGC	2 cut(s)	207, 611
AclWI	GGATC	2 cut(s)	157, 193
AfaI	GTAC	4 cut(s)	132, 218, 522, 713
AfiI	CCNNNNNNNGG	3 cut(s)	140, 146, 595
AgsI	TTSAA	1 cut(s)	629
AjnI	CCWGG	3 cut(s)	139, 381, 804
AloI	GAACNNNNNNTCC	2 cut(s)	520, 552
AluBI	AGCT	4 cut(s)	326, 470, 632, 641
AluI	AGCT	4 cut(s)	326, 470, 632, 641
Alw26I	GTCTC	1 cut(s)	785
AlwI	GGATC	2 cut(s)	157, 193
AlwNI	CAGNNNCTG	1 cut(s)	745
Ama87I	CYCGRG	1 cut(s)	782
AoxI	GGCC	2 cut(s)	164, 203
ApaI	GGGCCC	1 cut(s)	207
ApeKI	GCWGC	1 cut(s)	470
ArsI	GACNNNNNNTTYG	2 cut(s)	763, 795
Asp718I	GGTACC	1 cut(s)	130
AspS9I	GGNCC	3 cut(s)	203, 204, 801
AsuC2I	CCSGG	2 cut(s)	333, 540
AsuHPI	GGTGA	1 cut(s)	352
AvaI	CYCGRG	1 cut(s)	782
AvaII	GGWCC	1 cut(s)	801
BaeGI	GKGCMC	1 cut(s)	207
BanI	GGYRCC	1 cut(s)	130
BanII	GRGCYC	1 cut(s)	207
BbvI	GCAGC	1 cut(s)	457
BccI	CCATC	5 cut(s)	34, 73, 79, 586, 792
BciT130I	CCWGG	3 cut(s)	141, 383, 806
BciVI	GTATCC	1 cut(s)	514
BcnI	CCSGG	2 cut(s)	333, 540
BcoDI	GTCTC	1 cut(s)	785
BfaI	CTAG	2 cut(s)	431, 614
BfuI	GTATCC	1 cut(s)	514
BisI	GCNGC	1 cut(s)	471
BlsI	GCNGC	1 cut(s)	472
Bme1390I	CCNGG	5 cut(s)	141, 333, 383, 540, 806
Bme18I	GGWCC	1 cut(s)	801
BmeT110I	CYCGRG	1 cut(s)	782
BmgT120I	GGNCC	3 cut(s)	203, 204, 801
BmiI	GGNNCC	3 cut(s)	132, 205, 803
BmrFI	CCNGG	5 cut(s)	141, 333, 383, 540, 806
BmsI	GCATC	2 cut(s)	82, 296
BpmI	CTGGAG	4 cut(s)	123, 243, 363, 495
BpuMI	CCSGG	2 cut(s)	333, 540
BsaJI	CCNNGG	1 cut(s)	804
BsaWI	WCCGGW	2 cut(s)	241, 650
Bsc4I	CCNNNNNNNGG	3 cut(s)	140, 146, 595
Bse1I	ACTGG	4 cut(s)	260, 346, 448, 778
BseBI	CCWGG	3 cut(s)	141, 383, 806
BseDI	CCNNGG	1 cut(s)	804
BseGI	GGATG	4 cut(s)	60, 71, 287, 803
BseLI	CCNNNNNNNGG	3 cut(s)	140, 146, 595
BseMII	CTCAG	1 cut(s)	752
BseNI	ACTGG	4 cut(s)	260, 346, 448, 778
BseRI	GAGGAG	2 cut(s)	473, 611
BseSI	GKGCMC	1 cut(s)	207
BseXI	GCAGC	1 cut(s)	457
BsgI	GTGCAG	3 cut(s)	66, 631, 702
BshFI	GGCC	2 cut(s)	166, 205
BshNI	GGYRCC	1 cut(s)	130
BsiHKCI	CYCGRG	1 cut(s)	782
BsiSI	CCGG	4 cut(s)	242, 333, 540, 651
BslI	CCNNNNNNNGG	3 cut(s)	140, 146, 595
BsmAI	GTCTC	1 cut(s)	785
BsmBI	CGTCTC	1 cut(s)	785
BsnI	GGCC	2 cut(s)	166, 205
BsoBI	CYCGRG	1 cut(s)	782
Bsp120I	GGGCCC	1 cut(s)	203
Bsp1286I	GDGCHC	1 cut(s)	207
Bsp143I	GATC	2 cut(s)	149, 185
BspACI	CCGC	2 cut(s)	207, 611
BspANI	GGCC	2 cut(s)	166, 205
BspCNI	CTCAG	1 cut(s)	751
BspLI	GGNNCC	3 cut(s)	132, 205, 803
BspPI	GGATC	2 cut(s)	157, 193
BspT107I	GGYRCC	1 cut(s)	130
BsrI	ACTGG	4 cut(s)	260, 346, 448, 778
BssECI	CCNNGG	1 cut(s)	804
BssMI	GATC	2 cut(s)	149, 185
Bst2UI	CCWGG	3 cut(s)	141, 383, 806
Bst4CI	ACNGT	4 cut(s)	109, 667, 733, 747
BstC8I	GCNNGC	3 cut(s)	62, 207, 396
BstDEI	CTNAG	2 cut(s)	29, 738
BstEII	GGTNACC	1 cut(s)	584
BstF5I	GGATG	4 cut(s)	60, 71, 287, 803
BstKTI	GATC	2 cut(s)	152, 188
BstMAI	GTCTC	1 cut(s)	785
BstMBI	GATC	2 cut(s)	149, 185
BstMWI	GCNNNNNNNGC	1 cut(s)	638
BstNI	CCWGG	3 cut(s)	141, 383, 806
BstNSI	RCATGY	1 cut(s)	64
BstPI	GGTNACC	1 cut(s)	584
BstSCI	CCNGG	5 cut(s)	139, 331, 381, 538, 804
BstSLI	GKGCMC	1 cut(s)	207
BstV1I	GCAGC	1 cut(s)	457
BstX2I	RGATCY	1 cut(s)	185
BstYI	RGATCY	1 cut(s)	185
BsuI	GTATCC	1 cut(s)	514
BsuRI	GGCC	2 cut(s)	166, 205
BtsCI	GGATG	4 cut(s)	60, 71, 287, 803
Cac8I	GCNNGC	3 cut(s)	62, 207, 396
CaiI	CAGNNNCTG	1 cut(s)	745
Cfr13I	GGNCC	3 cut(s)	203, 204, 801
CseI	GACGC	1 cut(s)	590
Csp6I	GTAC	4 cut(s)	131, 217, 521, 712
CviAII	CATG	3 cut(s)	61, 175, 524
CviJI	RGCY	6 cut(s)	166, 205, 326, 470, 632, 641
CviKI_1	RGCY	6 cut(s)	166, 205, 326, 470, 632, 641
CviQI	GTAC	4 cut(s)	131, 217, 521, 712
DdeI	CTNAG	2 cut(s)	29, 738
DpnI	GATC	2 cut(s)	151, 187
DpnII	GATC	2 cut(s)	149, 185
Eco147I	AGGCCT	1 cut(s)	166
Eco24I	GRGCYC	1 cut(s)	207
Eco47I	GGWCC	1 cut(s)	801
Eco88I	CYCGRG	1 cut(s)	782
Eco91I	GGTNACC	1 cut(s)	584
EcoO65I	GGTNACC	1 cut(s)	584
EcoRII	CCWGG	3 cut(s)	139, 381, 804
EcoT38I	GRGCYC	1 cut(s)	207
Esp3I	CGTCTC	1 cut(s)	785
FaeI	CATG	3 cut(s)	64, 178, 527
FatI	CATG	3 cut(s)	60, 174, 523
FauI	CCCGC	1 cut(s)	214
Fnu4HI	GCNGC	1 cut(s)	471
FokI	GGATG	4 cut(s)	58, 67, 274, 810
FriOI	GRGCYC	1 cut(s)	207
Fsp4HI	GCNGC	1 cut(s)	471
FspBI	CTAG	2 cut(s)	431, 614
GluI	GCNGC	1 cut(s)	471
GsuI	CTGGAG	4 cut(s)	123, 243, 363, 495
HaeIII	GGCC	2 cut(s)	166, 205
HapII	CCGG	4 cut(s)	242, 333, 540, 651
HgaI	GACGC	1 cut(s)	590
Hin1II	CATG	3 cut(s)	64, 178, 527
HincII	GTYRAC	2 cut(s)	670, 814
HindII	GTYRAC	2 cut(s)	670, 814
HindIII	AAGCTT	1 cut(s)	639
HinfI	GANTC	3 cut(s)	411, 434, 765
HpaII	CCGG	4 cut(s)	242, 333, 540, 651
HphI	GGTGA	1 cut(s)	352
Hpy166II	GTNNAC	4 cut(s)	219, 379, 670, 814
Hpy188I	TCNGA	3 cut(s)	11, 418, 741
Hpy188III	TCNNGA	2 cut(s)	226, 782
Hpy8I	GTNNAC	4 cut(s)	219, 379, 670, 814
HpyAV	CCTTC	3 cut(s)	276, 484, 787
HpyCH4III	ACNGT	4 cut(s)	109, 667, 733, 747
HpyCH4IV	ACGT	1 cut(s)	159
HpyCH4V	TGCA	4 cut(s)	47, 60, 648, 683
HpyF10VI	GCNNNNNNNGC	1 cut(s)	638
HpyF3I	CTNAG	2 cut(s)	29, 738
HpySE526I	ACGT	1 cut(s)	159
Hsp92II	CATG	3 cut(s)	64, 178, 527
KpnI	GGTACC	1 cut(s)	134
Kzo9I	GATC	2 cut(s)	149, 185
LmnI	GCTCC	1 cut(s)	598
Lsp1109I	GCAGC	1 cut(s)	457
LweI	GCATC	2 cut(s)	82, 296
MaeI	CTAG	2 cut(s)	431, 614
MaeII	ACGT	1 cut(s)	159
MaeIII	GTNAC	6 cut(s)	439, 544, 584, 661, 685, 692
MalI	GATC	2 cut(s)	151, 187
MboI	GATC	2 cut(s)	149, 185
MboII	GAAGA	4 cut(s)	29, 49, 246, 527
MflI	RGATCY	1 cut(s)	185
MhlI	GDGCHC	1 cut(s)	207
MluCI	AATT	5 cut(s)	83, 250, 268, 364, 606
MmeI	TCCRAC	1 cut(s)	34
MseI	TTAA	2 cut(s)	195, 294
MspA1I	CMGCKG	1 cut(s)	470
MspI	CCGG	4 cut(s)	242, 333, 540, 651
MspR9I	CCNGG	5 cut(s)	141, 333, 383, 540, 806
MvaI	CCWGG	3 cut(s)	141, 383, 806
MwoI	GCNNNNNNNGC	1 cut(s)	638
NciI	CCSGG	2 cut(s)	333, 540
NdeII	GATC	2 cut(s)	149, 185
NlaIII	CATG	3 cut(s)	64, 178, 527
NlaIV	GGNNCC	3 cut(s)	132, 205, 803
NmuCI	GTSAC	1 cut(s)	692
NspI	RCATGY	1 cut(s)	64
PaeI	GCATGC	1 cut(s)	64
PaeR7I	CTCGAG	1 cut(s)	782
PceI	AGGCCT	1 cut(s)	166
PfeI	GAWTC	3 cut(s)	411, 434, 765
PfoI	TCCNGGA	2 cut(s)	139, 538
PkrI	GCNGC	1 cut(s)	472
Psp6I	CCWGG	3 cut(s)	139, 381, 804
PspEI	GGTNACC	1 cut(s)	584
PspGI	CCWGG	3 cut(s)	139, 381, 804
PspN4I	GGNNCC	3 cut(s)	132, 205, 803
PspOMI	GGGCCC	1 cut(s)	203
PspPI	GGNCC	3 cut(s)	203, 204, 801
PstNI	CAGNNNCTG	1 cut(s)	745
PsuI	RGATCY	1 cut(s)	185
PvuII	CAGCTG	1 cut(s)	470
RsaI	GTAC	4 cut(s)	132, 218, 522, 713
RsaNI	GTAC	4 cut(s)	131, 217, 521, 712
SaqAI	TTAA	2 cut(s)	195, 294
SatI	GCNGC	1 cut(s)	471
Sau3AI	GATC	2 cut(s)	149, 185
Sau96I	GGNCC	3 cut(s)	203, 204, 801
ScrFI	CCNGG	5 cut(s)	141, 333, 383, 540, 806
SduI	GDGCHC	1 cut(s)	207
SetI	ASST	9 cut(s)	139, 162, 328, 432, 472, 586, 634, 643, 813
SfaNI	GCATC	2 cut(s)	82, 296
Sfr274I	CTCGAG	1 cut(s)	782
SinI	GGWCC	1 cut(s)	801
SlaI	CTCGAG	1 cut(s)	782
SmlI	CTYRAG	1 cut(s)	782
SmoI	CTYRAG	1 cut(s)	782
SphI	GCATGC	1 cut(s)	64
Sse9I	AATT	5 cut(s)	83, 250, 268, 364, 606
SseBI	AGGCCT	1 cut(s)	166
SsiI	CCGC	2 cut(s)	207, 611
SspMI	CTAG	2 cut(s)	431, 614
StuI	AGGCCT	1 cut(s)	166
StyD4I	CCNGG	5 cut(s)	139, 331, 381, 538, 804
TaaI	ACNGT	4 cut(s)	109, 667, 733, 747
TaiI	ACGT	1 cut(s)	162
TaqI	TCGA	1 cut(s)	783
TasI	AATT	5 cut(s)	83, 250, 268, 364, 606
TatI	WGTACW	3 cut(s)	216, 520, 711
TfiI	GAWTC	3 cut(s)	411, 434, 765
Tru1I	TTAA	2 cut(s)	195, 294
Tru9I	TTAA	2 cut(s)	195, 294
TseFI	GTSAC	1 cut(s)	692
TseI	GCWGC	1 cut(s)	470
Tsp45I	GTSAC	1 cut(s)	692
TspDTI	ATGAA	4 cut(s)	50, 472, 651, 765
TspGWI	ACGGA	2 cut(s)	64, 308
VpaK11BI	GGWCC	1 cut(s)	801
XceI	RCATGY	1 cut(s)	64
XhoI	CTCGAG	1 cut(s)	782
XspI	CTAG	2 cut(s)	431, 614

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.