Rh6CG034700

Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0002089
Physical Location & Seq
Reverse (-)
3272145 .. 3276915
4771 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG034700.1

Sequence Viewer

Length: 864 bp
ATGTCTTCTTCAGCTTTGCAAACAACTGGTGAATCTAACAACCACAGTCTGAAAAACGGTGAAATGTATGCTGATGGCATTAACTGGGATGATCTTGGGTTTGGACTGATTCCAATCGATTACATGTACACCATGAAATGCTCCGACGGAGAAAACTTTTCACAAGGACATCTCTCTCCCTTTGGAAAGATTGAGCTTTGCCCATCTGCTGGAATATTGAATTATGGACAGGGACTATTCGAAGGTCTTAAGGCGACCAGAACAGAAGATGGTCGTATTATGCTGTTTCGGCCCCAAGAGAATGCTCTAAGAATGAAGATGGGTGCAGAGAGAATGTGCATGCCATCTCCATCCGTTGAGCAATTTGTTGATGCTGTGAAGCAAACAGTCTTCGCCAACAAGCGTTGGGTACCACCTCCAGGAAAAGGATCATTGTATATTAGGCCTTTGCTTATGGGGAGTGGATCTAATCTGGGCTTGGGGCCGGGACTGGAGTATACATTCCTAATATTTGCTTCTCCAGTTGGTAATAATTATCACAAGGGAAGGGCAGCCCTCAATTTGTATGTGGAGCATAAAATCCACAGAGCTACTCCTGGTGGAACTGGAGGTGTCAAGTCCGTCACCAATTACTCACCTGTTTACCAAACACAACAGCAAGCAAGGGCCAAGGGGTTCTCTGATGTCTTATTCCTAGATTCTGCAACTGGTAAAAACATTGAGGAGATTGTAGCAGCTAACATTTTCATTCTGAAGGGTAATGTCATTTCAACTCCAACACTGAAACATGGAACTATCCTCCCTGGAGTAACCCGTAAAAGCATCATTGACATTGCCCTTGATTTTGGTTACCAGGTGATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00270 ko00280 ko00290 ko00770 ko01100 ko01110 ko01130 ko01210 ko01230 map00270 map00280 map00290 map00770 map01100 map01110 map01130 map01210 map01230
Pfam Domains
Protein Families
Aminotran_4

Protein Analysis

287

Amino Acids

31.23

Weight (kDa)

8.64

Isoelectric Point (pI)

47.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aminotran_4 PF01063 78 - 286 1.1e-21 Amino-transferase class IV
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 409
AccB1I GGYRCC 1 cut(s) 409
AccB7I CCANNNNNTGG 1 cut(s) 209
AccI GTMKAC 1 cut(s) 497
AclWI GGATC 2 cut(s) 436, 472
AcuI CTGAAG 1 cut(s) 773
AfaI GTAC 2 cut(s) 128, 411
AfiI CCNNNNNNNGG 3 cut(s) 209, 419, 425
AflII CTTAAG 1 cut(s) 248
AflIII ACRYGT 1 cut(s) 123
AgsI TTSAA 2 cut(s) 220, 771
AjnI CCWGG 4 cut(s) 418, 595, 802, 852
AluBI AGCT 4 cut(s) 14, 196, 590, 737
AluI AGCT 4 cut(s) 14, 196, 590, 737
AlwI GGATC 2 cut(s) 436, 472
AoxI GGCC 4 cut(s) 290, 443, 482, 666
ApeKI GCWGC 2 cut(s) 551, 734
Asp718I GGTACC 1 cut(s) 409
AspS9I GGNCC 3 cut(s) 291, 482, 666
AsuC2I CCSGG 1 cut(s) 486
AsuHPI GGTGA 4 cut(s) 41, 71, 616, 627
AsuII TTCGAA 1 cut(s) 240
BanI GGYRCC 1 cut(s) 409
BbsI GAAGAC 1 cut(s) 382
BbvI GCAGC 2 cut(s) 563, 746
BccI CCATC 6 cut(s) 68, 211, 263, 313, 352, 358
BciT130I CCWGG 4 cut(s) 420, 597, 804, 854
BcnI CCSGG 1 cut(s) 486
BfaI CTAG 1 cut(s) 695
BfrI CTTAAG 1 cut(s) 248
BisI GCNGC 2 cut(s) 552, 735
BlsI GCNGC 2 cut(s) 553, 736
Bme1390I CCNGG 5 cut(s) 420, 486, 597, 804, 854
BmgT120I GGNCC 3 cut(s) 291, 482, 666
BmiI GGNNCC 3 cut(s) 293, 411, 483
BmrFI CCNGG 5 cut(s) 420, 486, 597, 804, 854
BmrI ACTGGG 1 cut(s) 94
BmsI GCATC 2 cut(s) 361, 831
BmuI ACTGGG 1 cut(s) 94
BpiI GAAGAC 1 cut(s) 382
BpmI CTGGAG 5 cut(s) 402, 504, 512, 627, 825
Bpu14I TTCGAA 1 cut(s) 240
BpuMI CCSGG 1 cut(s) 486
Bsa29I ATCGAT 1 cut(s) 117
BsaBI GATNNNNATC 1 cut(s) 113
BsaJI CCNNGG 2 cut(s) 669, 802
Bsc4I CCNNNNNNNGG 3 cut(s) 209, 419, 425
Bse1I ACTGG 6 cut(s) 31, 89, 495, 521, 610, 712
Bse3DI GCAATG 1 cut(s) 831
Bse8I GATNNNNATC 1 cut(s) 113
BseBI CCWGG 4 cut(s) 420, 597, 804, 854
BseCI ATCGAT 1 cut(s) 117
BseDI CCNNGG 2 cut(s) 669, 802
BseGI GGATG 2 cut(s) 94, 350
BseJI GATNNNNATC 1 cut(s) 113
BseLI CCNNNNNNNGG 3 cut(s) 209, 419, 425
BseMI GCAATG 1 cut(s) 831
BseNI ACTGG 6 cut(s) 31, 89, 495, 521, 610, 712
BseRI GAGGAG 1 cut(s) 737
BseXI GCAGC 2 cut(s) 563, 746
BsgI GTGCAG 1 cut(s) 345
BshFI GGCC 4 cut(s) 292, 445, 484, 668
BshNI GGYRCC 1 cut(s) 409
BshVI ATCGAT 1 cut(s) 117
BsiSI CCGG 1 cut(s) 485
BslFI GGGAC 2 cut(s) 246, 501
BslI CCNNNNNNNGG 3 cut(s) 209, 419, 425
BsmFI GGGAC 2 cut(s) 246, 501
BsmI GAATGC 1 cut(s) 307
BsnI GGCC 4 cut(s) 292, 445, 484, 668
Bsp119I TTCGAA 1 cut(s) 240
Bsp1407I TGTACA 1 cut(s) 126
Bsp143I GATC 4 cut(s) 91, 428, 464, 858
BspANI GGCC 4 cut(s) 292, 445, 484, 668
BspDI ATCGAT 1 cut(s) 117
BspLI GGNNCC 3 cut(s) 293, 411, 483
BspPI GGATC 2 cut(s) 436, 472
BspT104I TTCGAA 1 cut(s) 240
BspT107I GGYRCC 1 cut(s) 409
BspTI CTTAAG 1 cut(s) 248
BsrDI GCAATG 1 cut(s) 831
BsrGI TGTACA 1 cut(s) 126
BsrI ACTGG 6 cut(s) 31, 89, 495, 521, 610, 712
BssECI CCNNGG 2 cut(s) 669, 802
BssMI GATC 4 cut(s) 91, 428, 464, 858
BssNAI GTATAC 1 cut(s) 498
BssT1I CCWWGG 1 cut(s) 669
Bst1107I GTATAC 1 cut(s) 498
Bst2UI CCWGG 4 cut(s) 420, 597, 804, 854
Bst4CI ACNGT 3 cut(s) 47, 59, 388
BstAFI CTTAAG 1 cut(s) 248
BstAUI TGTACA 1 cut(s) 126
BstBI TTCGAA 1 cut(s) 240
BstC8I GCNNGC 2 cut(s) 341, 660
BstDEI CTNAG 1 cut(s) 308
BstEII GGTNACC 1 cut(s) 848
BstF5I GGATG 2 cut(s) 94, 350
BstKTI GATC 4 cut(s) 94, 431, 467, 861
BstMBI GATC 4 cut(s) 91, 428, 464, 858
BstMWI GCNNNNNNNGC 1 cut(s) 289
BstNI CCWGG 4 cut(s) 420, 597, 804, 854
BstNSI RCATGY 2 cut(s) 127, 343
BstPI GGTNACC 1 cut(s) 848
BstSCI CCNGG 5 cut(s) 418, 484, 595, 802, 852
BstV1I GCAGC 2 cut(s) 563, 746
BstV2I GAAGAC 1 cut(s) 382
BstX2I RGATCY 1 cut(s) 464
BstYI RGATCY 1 cut(s) 464
BstZ17I GTATAC 1 cut(s) 498
Bsu15I ATCGAT 1 cut(s) 117
BsuRI GGCC 4 cut(s) 292, 445, 484, 668
BsuTUI ATCGAT 1 cut(s) 117
BtsCI GGATG 2 cut(s) 94, 350
BtsIMutI CAGTG 1 cut(s) 779
Cac8I GCNNGC 2 cut(s) 341, 660
Cfr13I GGNCC 3 cut(s) 291, 482, 666
ClaI ATCGAT 1 cut(s) 117
CsiI ACCWGGT 1 cut(s) 852
Csp6I GTAC 2 cut(s) 127, 410
CviAII CATG 4 cut(s) 124, 133, 340, 788
CviQI GTAC 2 cut(s) 127, 410
DdeI CTNAG 1 cut(s) 308
DpnI GATC 4 cut(s) 93, 430, 466, 860
DpnII GATC 4 cut(s) 91, 428, 464, 858
Eco130I CCWWGG 1 cut(s) 669
Eco147I AGGCCT 1 cut(s) 445
Eco57I CTGAAG 1 cut(s) 773
Eco91I GGTNACC 1 cut(s) 848
EcoO65I GGTNACC 1 cut(s) 848
EcoRII CCWGG 4 cut(s) 418, 595, 802, 852
EcoT14I CCWWGG 1 cut(s) 669
ErhI CCWWGG 1 cut(s) 669
FaeI CATG 4 cut(s) 127, 136, 343, 791
FaqI GGGAC 2 cut(s) 246, 501
FatI CATG 4 cut(s) 123, 132, 339, 787
FblI GTMKAC 1 cut(s) 497
Fnu4HI GCNGC 2 cut(s) 552, 735
FokI GGATG 2 cut(s) 101, 337
Fsp4HI GCNGC 2 cut(s) 552, 735
FspBI CTAG 1 cut(s) 695
GluI GCNGC 2 cut(s) 552, 735
GsuI CTGGAG 5 cut(s) 402, 504, 512, 627, 825
HaeIII GGCC 4 cut(s) 292, 445, 484, 668
HapII CCGG 1 cut(s) 485
Hin1II CATG 4 cut(s) 127, 136, 343, 791
HinfI GANTC 3 cut(s) 32, 109, 698
HpaII CCGG 1 cut(s) 485
HphI GGTGA 4 cut(s) 41, 71, 616, 627
Hpy166II GTNNAC 3 cut(s) 129, 498, 643
Hpy188I TCNGA 4 cut(s) 51, 145, 682, 753
Hpy8I GTNNAC 3 cut(s) 129, 498, 643
Hpy99I CGWCG 1 cut(s) 149
HpyAV CCTTC 3 cut(s) 236, 540, 748
HpyCH4III ACNGT 3 cut(s) 47, 59, 388
HpyCH4V TGCA 4 cut(s) 19, 326, 339, 704
HpyF10VI GCNNNNNNNGC 1 cut(s) 289
HpyF3I CTNAG 1 cut(s) 308
Hsp92II CATG 4 cut(s) 127, 136, 343, 791
KpnI GGTACC 1 cut(s) 413
Kzo9I GATC 4 cut(s) 91, 428, 464, 858
LmnI GCTCC 2 cut(s) 146, 571
Lsp1109I GCAGC 2 cut(s) 563, 746
LweI GCATC 2 cut(s) 361, 831
MabI ACCWGGT 1 cut(s) 852
MaeI CTAG 1 cut(s) 695
MaeIII GTNAC 3 cut(s) 622, 808, 848
MalI GATC 4 cut(s) 93, 430, 466, 860
MboI GATC 4 cut(s) 91, 428, 464, 858
MboII GAAGA 3 cut(s) 278, 328, 382
MflI RGATCY 1 cut(s) 464
MluCI AATT 5 cut(s) 220, 362, 532, 559, 628
MmeI TCCRAC 2 cut(s) 168, 800
MnlI CCTC 5 cut(s) 426, 566, 602, 715, 809
MseI TTAA 2 cut(s) 81, 249
MspCI CTTAAG 1 cut(s) 248
MspI CCGG 1 cut(s) 485
MspR9I CCNGG 5 cut(s) 420, 486, 597, 804, 854
Mva1269I GAATGC 1 cut(s) 307
MvaI CCWGG 4 cut(s) 420, 597, 804, 854
MwoI GCNNNNNNNGC 1 cut(s) 289
NciI CCSGG 1 cut(s) 486
NdeII GATC 4 cut(s) 91, 428, 464, 858
NlaIII CATG 4 cut(s) 127, 136, 343, 791
NlaIV GGNNCC 3 cut(s) 293, 411, 483
NmuCI GTSAC 1 cut(s) 622
NspI RCATGY 2 cut(s) 127, 343
NspV TTCGAA 1 cut(s) 240
PaeI GCATGC 1 cut(s) 343
PceI AGGCCT 1 cut(s) 445
PciI ACATGT 1 cut(s) 123
PctI GAATGC 1 cut(s) 307
PfeI GAWTC 3 cut(s) 32, 109, 698
PflMI CCANNNNNTGG 1 cut(s) 209
PfoI TCCNGGA 1 cut(s) 418
PkrI GCNGC 2 cut(s) 553, 736
PscI ACATGT 1 cut(s) 123
Psp6I CCWGG 4 cut(s) 418, 595, 802, 852
PspEI GGTNACC 1 cut(s) 848
PspGI CCWGG 4 cut(s) 418, 595, 802, 852
PspN4I GGNNCC 3 cut(s) 293, 411, 483
PspPI GGNCC 3 cut(s) 291, 482, 666
PsuI RGATCY 1 cut(s) 464
RsaI GTAC 2 cut(s) 128, 411
RsaNI GTAC 2 cut(s) 127, 410
SaqAI TTAA 2 cut(s) 81, 249
SatI GCNGC 2 cut(s) 552, 735
Sau3AI GATC 4 cut(s) 91, 428, 464, 858
Sau96I GGNCC 3 cut(s) 291, 482, 666
ScrFI CCNGG 5 cut(s) 420, 486, 597, 804, 854
SetI ASST 9 cut(s) 16, 198, 247, 418, 592, 613, 640, 739, 858
SexAI ACCWGGT 1 cut(s) 852
SfaNI GCATC 2 cut(s) 361, 831
SfuI TTCGAA 1 cut(s) 240
SmlI CTYRAG 1 cut(s) 248
SmoI CTYRAG 1 cut(s) 248
SphI GCATGC 1 cut(s) 343
Sse9I AATT 5 cut(s) 220, 362, 532, 559, 628
SseBI AGGCCT 1 cut(s) 445
SspI AATATT 2 cut(s) 216, 510
SspMI CTAG 1 cut(s) 695
StuI AGGCCT 1 cut(s) 445
StyD4I CCNGG 5 cut(s) 418, 484, 595, 802, 852
StyI CCWWGG 1 cut(s) 669
TaaI ACNGT 3 cut(s) 47, 59, 388
TaqI TCGA 2 cut(s) 117, 240
TasI AATT 5 cut(s) 220, 362, 532, 559, 628
TatI WGTACW 1 cut(s) 126
TfiI GAWTC 3 cut(s) 32, 109, 698
Tru1I TTAA 2 cut(s) 81, 249
Tru9I TTAA 2 cut(s) 81, 249
TscAI CASTG 1 cut(s) 786
TseFI GTSAC 1 cut(s) 622
TseI GCWGC 2 cut(s) 551, 734
Tsp45I GTSAC 1 cut(s) 622
TspDTI ATGAA 3 cut(s) 149, 329, 736
TspGWI ACGGA 3 cut(s) 162, 343, 610
TspRI CASTG 1 cut(s) 786
Van91I CCANNNNNTGG 1 cut(s) 209
Vha464I CTTAAG 1 cut(s) 248
XceI RCATGY 2 cut(s) 127, 343
XmiI GTMKAC 1 cut(s) 497
XspI CTAG 1 cut(s) 695
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.