Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004368.1

Orthogroup ID

OG0002089

Physical Location & Seq

Genomic Coordinates Reverse (-)

78902 .. 81046

Gene Structure 2145 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004368.1_g000016.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 867 bp

atgtcttcttcagctttgcaaacaactggtgaatctaacaatcacagtctgaaaaacggtgaaatgtatgctgatggcattaactgggatgatcttgggtttggactaattccaatcgattacatgtacaccatgaaatgctccgacggagaaagcttttcacaaggacatctctctccctttggaaagattgagctttgcccatctgctggaatattgaattatggacagggactattcgaaggtcttaaggcgaccagaacagaagatggtcgtattatgctatttcggccccaagagaatgctctaagaatgaagatgggtgcagagagaatgtgcatgccatctccatccgttgagcaatttgttgatgctgtgaagcaaacagtcttcgccaacaagcgttggggaagggcagccctcaatttgtatgttgaacataaaatccacagagctactcctggtggaactggaggtgtcaaatctgtcaccaattactcacctgtttaccaaacacaacagcaagcaagggccaagggattctctgatgtcttattcctagattctgcaactggtaaaaacattgaggagattgtagcagctaacattttcattctgaagggtaatgtcatttcaactccaacactgaaacatggaactatcctccctggagtaacccgtaaaagcatcattgatattgcccttgattttggttaccaggtggaggagcgtgtgatcccagtggaggatttacttgcagccgatgaagctttctgcacaggaactgccgtggttgtcaaccctattggcgctgtaacttatcaagacaagaggcaagtgcaacaccccattgatcctaataattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00270 ko00280 ko00290 ko00770 ko01100 ko01110 ko01130 ko01210 ko01230 map00270 map00280 map00290 map00770 map01100 map01110 map01130 map01210 map01230

Pfam Domains

Protein Families

Aminotran_4

Protein Analysis

288

Amino Acids

31.5

Weight (kDa)

5.89

Isoelectric Point (pI)

47.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002089)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50090 AT1G50110 AT1G50110
fragaria_vesca	FvH4_2g02760 FvH4_2g02870 FvH4_2g02870
malus_domestica	MD05G1110500.v1.1 MD10G1114000.v1.1
prunus_persica	Prupe.8G155300_v2.0.a1 Prupe.8G155500_v2.0.a1
pyrus_communis	pycom05g10650
rosa_chinensis	RchiOBHm_Chr6g0247221 RchiOBHm_Chr6g0247281 RchiOBHm_Chr6g0247341
rosa_laevigata	RLG00000015207 RLG00000015210
rosa_multiflora	Rmu_sc0000745.1_g000026 Rmu_sc0003226.1_g000006 Rmu_sc0004368.1_g000005 Rmu_sc0004368.1_g000016
rosa_roxburghii	Rroxscaffold_180G00433530 Rroxscaffold_180G00433590 Rroxscaffold_7G00214080 Rroxscaffold_7G00214230
rosa_rugosa	Rorug05G0524400 Rorug05G0524700 Rorug05G0524700 Rorug05G0524800 Rorug05G0524900 Rorug05G0525000 Rorug05G0525100 Rorug05G0525200 Rorug05G0525300
rosa_samantha	Rh6AG038600 Rh6AG039200 Rh6AG039600 Rh6AG040300 Rh6CG034300 Rh6CG034700 Rh6DG031900 Rh6DG032500
rosa_wichuraiana	Rw6G003320 Rw6G003390 Rw6G003460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	209
AclWI	GGATC	2 cut(s)	730, 848
AcuI	CTGAAG	1 cut(s)	638
AfaI	GTAC	1 cut(s)	128
AfiI	CCNNNNNNNGG	3 cut(s)	209, 724, 745
AflII	CTTAAG	1 cut(s)	248
AflIII	ACRYGT	1 cut(s)	123
AgsI	TTSAA	3 cut(s)	220, 437, 636
AjnI	CCWGG	3 cut(s)	460, 667, 717
AloI	GAACNNNNNNTCC	2 cut(s)	429, 461
AluBI	AGCT	6 cut(s)	14, 156, 196, 455, 602, 770
AluI	AGCT	6 cut(s)	14, 156, 196, 455, 602, 770
AlwI	GGATC	2 cut(s)	730, 848
AlwNI	CAGNNNCTG	1 cut(s)	785
AoxI	GGCC	2 cut(s)	290, 531
ApeKI	GCWGC	3 cut(s)	416, 599, 758
AspLEI	GCGC	1 cut(s)	812
AspS9I	GGNCC	2 cut(s)	291, 531
AsuHPI	GGTGA	4 cut(s)	41, 71, 481, 492
AsuII	TTCGAA	1 cut(s)	240
BbsI	GAAGAC	1 cut(s)	382
BbvI	GCAGC	3 cut(s)	428, 611, 770
BccI	CCATC	6 cut(s)	68, 211, 263, 313, 352, 358
BceAI	ACGGC	1 cut(s)	773
BciT130I	CCWGG	3 cut(s)	462, 669, 719
BfaI	CTAG	1 cut(s)	560
BfoI	RGCGCY	1 cut(s)	813
BfrI	CTTAAG	1 cut(s)	248
BisI	GCNGC	3 cut(s)	417, 600, 759
BlsI	GCNGC	3 cut(s)	418, 601, 760
Bme1390I	CCNGG	3 cut(s)	462, 669, 719
BmgT120I	GGNCC	2 cut(s)	291, 531
BmiI	GGNNCC	1 cut(s)	293
BmrFI	CCNGG	3 cut(s)	462, 669, 719
BmrI	ACTGGG	2 cut(s)	94, 734
BmsI	GCATC	2 cut(s)	361, 696
BmuI	ACTGGG	2 cut(s)	94, 734
BpiI	GAAGAC	1 cut(s)	382
BpmI	CTGGAG	2 cut(s)	492, 690
Bpu14I	TTCGAA	1 cut(s)	240
Bsa29I	ATCGAT	1 cut(s)	117
BsaJI	CCNNGG	3 cut(s)	534, 667, 789
Bsc4I	CCNNNNNNNGG	3 cut(s)	209, 724, 745
Bse1I	ACTGG	5 cut(s)	31, 89, 475, 577, 740
BseBI	CCWGG	3 cut(s)	462, 669, 719
BseCI	ATCGAT	1 cut(s)	117
BseDI	CCNNGG	3 cut(s)	534, 667, 789
BseGI	GGATG	2 cut(s)	94, 350
BseLI	CCNNNNNNNGG	3 cut(s)	209, 724, 745
BseNI	ACTGG	5 cut(s)	31, 89, 475, 577, 740
BseRI	GAGGAG	2 cut(s)	602, 740
BseXI	GCAGC	3 cut(s)	428, 611, 770
BsgI	GTGCAG	2 cut(s)	345, 760
BshFI	GGCC	2 cut(s)	292, 533
BshVI	ATCGAT	1 cut(s)	117
BslFI	GGGAC	1 cut(s)	246
BslI	CCNNNNNNNGG	3 cut(s)	209, 724, 745
BsmFI	GGGAC	1 cut(s)	246
BsmI	GAATGC	1 cut(s)	307
BsnI	GGCC	2 cut(s)	292, 533
Bsp119I	TTCGAA	1 cut(s)	240
Bsp1407I	TGTACA	1 cut(s)	126
Bsp143I	GATC	3 cut(s)	91, 735, 853
BspANI	GGCC	2 cut(s)	292, 533
BspDI	ATCGAT	1 cut(s)	117
BspLI	GGNNCC	1 cut(s)	293
BspPI	GGATC	2 cut(s)	730, 848
BspT104I	TTCGAA	1 cut(s)	240
BspTI	CTTAAG	1 cut(s)	248
BsrGI	TGTACA	1 cut(s)	126
BsrI	ACTGG	5 cut(s)	31, 89, 475, 577, 740
BssECI	CCNNGG	3 cut(s)	534, 667, 789
BssMI	GATC	3 cut(s)	91, 735, 853
BssT1I	CCWWGG	1 cut(s)	534
Bst2UI	CCWGG	3 cut(s)	462, 669, 719
Bst4CI	ACNGT	3 cut(s)	47, 59, 388
BstAFI	CTTAAG	1 cut(s)	248
BstAUI	TGTACA	1 cut(s)	126
BstBI	TTCGAA	1 cut(s)	240
BstC8I	GCNNGC	2 cut(s)	341, 525
BstDEI	CTNAG	1 cut(s)	308
BstDSI	CCRYGG	1 cut(s)	789
BstEII	GGTNACC	1 cut(s)	713
BstF5I	GGATG	2 cut(s)	94, 350
BstH2I	RGCGCY	1 cut(s)	813
BstHHI	GCGC	1 cut(s)	812
BstKTI	GATC	3 cut(s)	94, 738, 856
BstMBI	GATC	3 cut(s)	91, 735, 853
BstMWI	GCNNNNNNNGC	2 cut(s)	289, 767
BstNI	CCWGG	3 cut(s)	462, 669, 719
BstNSI	RCATGY	2 cut(s)	127, 343
BstPI	GGTNACC	1 cut(s)	713
BstSCI	CCNGG	3 cut(s)	460, 667, 717
BstV1I	GCAGC	3 cut(s)	428, 611, 770
BstV2I	GAAGAC	1 cut(s)	382
Bsu15I	ATCGAT	1 cut(s)	117
BsuRI	GGCC	2 cut(s)	292, 533
BsuTUI	ATCGAT	1 cut(s)	117
BtgI	CCRYGG	1 cut(s)	789
BtsCI	GGATG	2 cut(s)	94, 350
BtsIMutI	CAGTG	2 cut(s)	644, 747
Cac8I	GCNNGC	2 cut(s)	341, 525
CaiI	CAGNNNCTG	1 cut(s)	785
CfoI	GCGC	1 cut(s)	812
Cfr13I	GGNCC	2 cut(s)	291, 531
ClaI	ATCGAT	1 cut(s)	117
CsiI	ACCWGGT	1 cut(s)	717
Csp6I	GTAC	1 cut(s)	127
CviAII	CATG	4 cut(s)	124, 133, 340, 653
CviQI	GTAC	1 cut(s)	127
DdeI	CTNAG	1 cut(s)	308
DpnI	GATC	3 cut(s)	93, 737, 855
DpnII	GATC	3 cut(s)	91, 735, 853
Eco130I	CCWWGG	1 cut(s)	534
Eco57I	CTGAAG	1 cut(s)	638
Eco91I	GGTNACC	1 cut(s)	713
EcoO65I	GGTNACC	1 cut(s)	713
EcoRII	CCWGG	3 cut(s)	460, 667, 717
EcoT14I	CCWWGG	1 cut(s)	534
ErhI	CCWWGG	1 cut(s)	534
FaeI	CATG	4 cut(s)	127, 136, 343, 656
FaiI	YATR	9 cut(s)	69, 125, 134, 225, 281, 341, 432, 441, 654
FaqI	GGGAC	1 cut(s)	246
FatI	CATG	4 cut(s)	123, 132, 339, 652
Fnu4HI	GCNGC	3 cut(s)	417, 600, 759
FokI	GGATG	2 cut(s)	101, 337
Fsp4HI	GCNGC	3 cut(s)	417, 600, 759
FspBI	CTAG	1 cut(s)	560
GlaI	GCGC	1 cut(s)	811
GluI	GCNGC	3 cut(s)	417, 600, 759
GsuI	CTGGAG	2 cut(s)	492, 690
HaeII	RGCGCY	1 cut(s)	813
HaeIII	GGCC	2 cut(s)	292, 533
HhaI	GCGC	1 cut(s)	812
Hin1II	CATG	4 cut(s)	127, 136, 343, 656
Hin6I	GCGC	1 cut(s)	810
HinP1I	GCGC	1 cut(s)	810
HincII	GTYRAC	1 cut(s)	799
HindII	GTYRAC	1 cut(s)	799
HindIII	AAGCTT	2 cut(s)	154, 768
HinfI	GANTC	3 cut(s)	32, 540, 563
HphI	GGTGA	4 cut(s)	41, 71, 481, 492
Hpy166II	GTNNAC	3 cut(s)	129, 508, 799
Hpy188I	TCNGA	4 cut(s)	51, 145, 547, 618
Hpy188III	TCNNGA	1 cut(s)	824
Hpy8I	GTNNAC	3 cut(s)	129, 508, 799
Hpy99I	CGWCG	1 cut(s)	149
HpyAV	CCTTC	3 cut(s)	236, 405, 613
HpyCH4III	ACNGT	3 cut(s)	47, 59, 388
HpyCH4V	TGCA	7 cut(s)	19, 326, 339, 569, 758, 777, 841
HpyF10VI	GCNNNNNNNGC	2 cut(s)	289, 767
HpyF3I	CTNAG	1 cut(s)	308
Hsp92II	CATG	4 cut(s)	127, 136, 343, 656
HspAI	GCGC	1 cut(s)	810
Kzo9I	GATC	3 cut(s)	91, 735, 853
LmnI	GCTCC	2 cut(s)	146, 727
Lsp1109I	GCAGC	3 cut(s)	428, 611, 770
LweI	GCATC	2 cut(s)	361, 696
MabI	ACCWGGT	1 cut(s)	717
MaeI	CTAG	1 cut(s)	560
MaeIII	GTNAC	4 cut(s)	487, 673, 713, 814
MalI	GATC	3 cut(s)	93, 737, 855
MboI	GATC	3 cut(s)	91, 735, 853
MboII	GAAGA	3 cut(s)	278, 328, 382
MluCI	AATT	6 cut(s)	108, 220, 362, 424, 493, 862
MmeI	TCCRAC	2 cut(s)	168, 665
MnlI	CCTC	7 cut(s)	431, 467, 580, 674, 718, 739, 825
MseI	TTAA	2 cut(s)	81, 249
MspCI	CTTAAG	1 cut(s)	248
MspR9I	CCNGG	3 cut(s)	462, 669, 719
Mva1269I	GAATGC	1 cut(s)	307
MvaI	CCWGG	3 cut(s)	462, 669, 719
MwoI	GCNNNNNNNGC	2 cut(s)	289, 767
NdeII	GATC	3 cut(s)	91, 735, 853
NlaIII	CATG	4 cut(s)	127, 136, 343, 656
NlaIV	GGNNCC	1 cut(s)	293
NmuCI	GTSAC	1 cut(s)	487
NspI	RCATGY	2 cut(s)	127, 343
NspV	TTCGAA	1 cut(s)	240
PaeI	GCATGC	1 cut(s)	343
PciI	ACATGT	1 cut(s)	123
PctI	GAATGC	1 cut(s)	307
PfeI	GAWTC	3 cut(s)	32, 540, 563
PflMI	CCANNNNNTGG	1 cut(s)	209
PkrI	GCNGC	3 cut(s)	418, 601, 760
PscI	ACATGT	1 cut(s)	123
Psp6I	CCWGG	3 cut(s)	460, 667, 717
PspEI	GGTNACC	1 cut(s)	713
PspGI	CCWGG	3 cut(s)	460, 667, 717
PspN4I	GGNNCC	1 cut(s)	293
PspPI	GGNCC	2 cut(s)	291, 531
PstNI	CAGNNNCTG	1 cut(s)	785
RsaI	GTAC	1 cut(s)	128
RsaNI	GTAC	1 cut(s)	127
SaqAI	TTAA	2 cut(s)	81, 249
SatI	GCNGC	3 cut(s)	417, 600, 759
Sau3AI	GATC	3 cut(s)	91, 735, 853
Sau96I	GGNCC	2 cut(s)	291, 531
ScrFI	CCNGG	3 cut(s)	462, 669, 719
SexAI	ACCWGGT	1 cut(s)	717
SfaNI	GCATC	2 cut(s)	361, 696
SfuI	TTCGAA	1 cut(s)	240
SmlI	CTYRAG	1 cut(s)	248
SmoI	CTYRAG	1 cut(s)	248
SphI	GCATGC	1 cut(s)	343
Sse9I	AATT	6 cut(s)	108, 220, 362, 424, 493, 862
SspI	AATATT	1 cut(s)	216
SspMI	CTAG	1 cut(s)	560
StyD4I	CCNGG	3 cut(s)	460, 667, 717
StyI	CCWWGG	1 cut(s)	534
TaaI	ACNGT	3 cut(s)	47, 59, 388
TaqI	TCGA	2 cut(s)	117, 240
TasI	AATT	6 cut(s)	108, 220, 362, 424, 493, 862
TatI	WGTACW	1 cut(s)	126
TfiI	GAWTC	3 cut(s)	32, 540, 563
Tru1I	TTAA	2 cut(s)	81, 249
Tru9I	TTAA	2 cut(s)	81, 249
TscAI	CASTG	2 cut(s)	651, 747
TseFI	GTSAC	1 cut(s)	487
TseI	GCWGC	3 cut(s)	416, 599, 758
Tsp45I	GTSAC	1 cut(s)	487
TspDTI	ATGAA	4 cut(s)	149, 329, 601, 780
TspGWI	ACGGA	2 cut(s)	162, 343
TspRI	CASTG	2 cut(s)	651, 747
Van91I	CCANNNNNTGG	1 cut(s)	209
Vha464I	CTTAAG	1 cut(s)	248
XceI	RCATGY	2 cut(s)	127, 343
XspI	CTAG	1 cut(s)	560

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.