Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002089

Physical Location & Seq

Genomic Coordinates Reverse (-)

18554564 .. 18556826

Gene Structure 2263 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G50090.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1104 bp

ATGGCTCCTTCTGTGCACCCTTCTTCATCACCTCTTTTTACAAGTAAAGCCGATGAAAAGTATGCGAATGTAAAATGGGATGAGCTCGGATTCGCACTGGTTCCAACAGATTATATGTATGTGGCGAAATGCAAACAAGGAGAGAGCTTTTCAACAGGAGAGATTGTTCCTTATGGGGATATTTCTATAAGCCCTTGTGCTGGGATTCTCAATTATGGCCAGGGACTATTTGAAGGTCTCAAGGCTTACAGGACAGAAGACGGTCGGATCACACTCTTCCGACCTGACCAAAACGCTATTCGTATGCAAACAGGTGCAGATAGGCTTTGTATGACACCTCCTTCCCCGGAGCAATTCGTTGAAGCAGTTAAGCAAACTGTGCTTGCCAACAACAAATGGGTACCTCCTCCGGGGAAAGGAGCTTTGTATATTAGGCCTCTACTCATAGGTACTGGTGCTGTCCTTGGAGTAGCTTCAGCTCCTGAATATACGTTCCTCATTTACACATCTCCCGTGGGAAATTATCACAAGGCAAGCTCAGGCTTGAACCTCAAAGTTGATCATAACCATCGCCGAGCCCACTTCGGTGGAACAGGGGGTGTGAAGAGCTGCACAAATTATTCTCCAGTTGTAAAATCGTTGATCGAAGCAAAGTCTTCGGGTTTCTCTGATGTCTTGTTCCTGGATGCGGCAACTGGTAAAAACATCGAAGAGGTTTCTACTTGTAACATCTTCATTCTAAAGGGAAACATTGTATCCACTCCCCCAACTTCAGGAACCATTTTACCAGGAATCACAAGGAAGAGCATATGTGAGCTAGCCCGTGACATTGGCTATGAGGTTCAAGAACGTGATCTTTCTGTGGATGAGCTATTAGAGGCAGAGGAAGTTTTTTGCACGGGGACGGCAGTGGTCATTAAAGCTGTTGAAACCGTGACATTCCATGACAAAAGGGTAAAATATAGAACAGGAGAAGAAGCATTCTCTACGAAGCTTCACTTGATATTAACTAATATTCAAATGGGAGTTGTCGAAGATAAGAAGGGTTGGATGATGGAGATCGATCATTTGGTTGGAACAGATTCGTTTCCTGATGAAACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000096 GO:0000097 GO:0003674 GO:0003824 GO:0004084 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006520 GO:0006555 GO:0006790 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0008483 GO:0008652 GO:0009058 GO:0009066 GO:0009067 GO:0009086 GO:0009314 GO:0009416 GO:0009611 GO:0009628 GO:0009987 GO:0010326 GO:0016053 GO:0016143 GO:0016144 GO:0016740 GO:0016769 GO:0017144 GO:0019748 GO:0019752 GO:0019757 GO:0019758 GO:0019760 GO:0019761 GO:0033321 GO:0033506 GO:0043094 GO:0043102 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044272 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0044550 GO:0046394 GO:0050896 GO:0052654 GO:0052655 GO:0052656 GO:0071265 GO:0071267 GO:0071704 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

ko00270 ko00280 ko00290 ko00770 ko00966 ko01100 ko01110 ko01130 ko01210 ko01230 map00270 map00280 map00290 map00770 map00966 map01100 map01110 map01130 map01210 map01230

Pfam Domains

Protein Families

Aminotran_4

Protein Analysis

367

Amino Acids

40.0

Weight (kDa)

5.69

Isoelectric Point (pI)

43.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aminotran_4	PF01063	75 - 306	1.7e-39	Amino-transferase class IV

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002089)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50090 AT1G50110 AT1G50110
fragaria_vesca	FvH4_2g02760 FvH4_2g02870 FvH4_2g02870
malus_domestica	MD05G1110500.v1.1 MD10G1114000.v1.1
prunus_persica	Prupe.8G155300_v2.0.a1 Prupe.8G155500_v2.0.a1
pyrus_communis	pycom05g10650
rosa_chinensis	RchiOBHm_Chr6g0247221 RchiOBHm_Chr6g0247281 RchiOBHm_Chr6g0247341
rosa_laevigata	RLG00000015207 RLG00000015210
rosa_multiflora	Rmu_sc0000745.1_g000026 Rmu_sc0003226.1_g000006 Rmu_sc0004368.1_g000005 Rmu_sc0004368.1_g000016
rosa_roxburghii	Rroxscaffold_180G00433530 Rroxscaffold_180G00433590 Rroxscaffold_7G00214080 Rroxscaffold_7G00214230
rosa_rugosa	Rorug05G0524400 Rorug05G0524700 Rorug05G0524700 Rorug05G0524800 Rorug05G0524900 Rorug05G0525000 Rorug05G0525100 Rorug05G0525200 Rorug05G0525300
rosa_samantha	Rh6AG038600 Rh6AG039200 Rh6AG039600 Rh6AG040300 Rh6CG034300 Rh6CG034700 Rh6DG031900 Rh6DG032500
rosa_wichuraiana	Rw6G003320 Rw6G003390 Rw6G003460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	400
AccB1I	GGYRCC	1 cut(s)	400
AciI	CCGC	1 cut(s)	689
AclWI	GGATC	1 cut(s)	275
AcoI	YGGCCR	1 cut(s)	217
AcuI	CTGAAG	2 cut(s)	459, 756
AfaI	GTAC	2 cut(s)	402, 451
AfiI	CCNNNNNNNGG	5 cut(s)	200, 410, 416, 688, 773
AgsI	TTSAA	7 cut(s)	153, 233, 362, 547, 845, 929, 1019
AjnI	CCWGG	3 cut(s)	219, 681, 787
AjuI	GAANNNNNNNTTGG	2 cut(s)	282, 314
AleI	CACNNNNGTG	1 cut(s)	585
AloI	GAACNNNNNNTCC	2 cut(s)	150, 182
Alw21I	GWGCWC	2 cut(s)	18, 87
Alw26I	GTCTC	1 cut(s)	242
Alw44I	GTGCAC	1 cut(s)	14
AlwI	GGATC	1 cut(s)	275
AlwNI	CAGNNNCTG	1 cut(s)	482
AoxI	GGCC	2 cut(s)	217, 434
ApaLI	GTGCAC	1 cut(s)	14
ApeKI	GCWGC	1 cut(s)	609
Asp700I	GAANNNNTTC	1 cut(s)	1081
Asp718I	GGTACC	1 cut(s)	400
AsuC2I	CCSGG	2 cut(s)	347, 411
AsuHPI	GGTGA	1 cut(s)	21
AsuNHI	GCTAGC	1 cut(s)	817
BaeGI	GKGCMC	1 cut(s)	18
BalI	TGGCCA	1 cut(s)	219
BanI	GGYRCC	1 cut(s)	400
BanII	GRGCYC	2 cut(s)	87, 580
BbsI	GAAGAC	2 cut(s)	264, 648
Bbv12I	GWGCWC	2 cut(s)	18, 87
BbvI	GCAGC	1 cut(s)	596
BccI	CCATC	2 cut(s)	576, 1048
BceAI	ACGGC	1 cut(s)	921
BcgI	CGANNNNNNTGC	2 cut(s)	639, 673
BciT130I	CCWGG	3 cut(s)	221, 683, 789
BciVI	GTATCC	1 cut(s)	766
BclI	TGATCA	1 cut(s)	559
BcnI	CCSGG	2 cut(s)	347, 411
BcoDI	GTCTC	1 cut(s)	242
BfaI	CTAG	1 cut(s)	818
BfuI	GTATCC	1 cut(s)	766
BisI	GCNGC	2 cut(s)	610, 690
BlsI	GCNGC	2 cut(s)	611, 691
Bme1390I	CCNGG	5 cut(s)	221, 347, 411, 683, 789
BmiI	GGNNCC	4 cut(s)	6, 102, 402, 778
BmrFI	CCNGG	5 cut(s)	221, 347, 411, 683, 789
BmsI	GCATC	1 cut(s)	676
BmtI	GCTAGC	1 cut(s)	821
BpiI	GAAGAC	2 cut(s)	264, 648
BpmI	CTGGAG	1 cut(s)	609
Bpu10I	CCTNAGC	1 cut(s)	538
BpuEI	CTTGAG	1 cut(s)	224
BpuMI	CCSGG	2 cut(s)	347, 411
Bsa29I	ATCGAT	1 cut(s)	1062
BsaBI	GATNNNNATC	1 cut(s)	1058
BsaI	GGTCTC	1 cut(s)	242
BsaJI	CCNNGG	5 cut(s)	220, 345, 410, 463, 513
BsaXI	ACNNNNNCTCC	2 cut(s)	150, 180
Bsc4I	CCNNNNNNNGG	5 cut(s)	200, 410, 416, 688, 773
Bse1I	ACTGG	4 cut(s)	102, 457, 626, 700
Bse8I	GATNNNNATC	1 cut(s)	1058
BseBI	CCWGG	3 cut(s)	221, 683, 789
BseCI	ATCGAT	1 cut(s)	1062
BseDI	CCNNGG	5 cut(s)	220, 345, 410, 463, 513
BseGI	GGATG	4 cut(s)	85, 691, 871, 1056
BseJI	GATNNNNATC	1 cut(s)	1058
BseLI	CCNNNNNNNGG	5 cut(s)	200, 410, 416, 688, 773
BseMII	CTCAG	1 cut(s)	552
BseNI	ACTGG	4 cut(s)	102, 457, 626, 700
BseRI	GAGGAG	1 cut(s)	396
BseSI	GKGCMC	1 cut(s)	18
BseXI	GCAGC	1 cut(s)	596
BseYI	CCCAGC	1 cut(s)	200
BsgI	GTGCAG	2 cut(s)	336, 595
Bsh1285I	CGRYCG	1 cut(s)	265
BshFI	GGCC	2 cut(s)	219, 436
BshNI	GGYRCC	1 cut(s)	400
BshVI	ATCGAT	1 cut(s)	1062
BsiEI	CGRYCG	1 cut(s)	265
BsiHKAI	GWGCWC	2 cut(s)	18, 87
BsiSI	CCGG	2 cut(s)	347, 410
BslFI	GGGAC	2 cut(s)	237, 916
BslI	CCNNNNNNNGG	5 cut(s)	200, 410, 416, 688, 773
BsmAI	GTCTC	1 cut(s)	242
BsmFI	GGGAC	2 cut(s)	237, 916
BsmI	GAATGC	1 cut(s)	980
BsnI	GGCC	2 cut(s)	219, 436
Bso31I	GGTCTC	1 cut(s)	242
Bsp1286I	GDGCHC	3 cut(s)	18, 87, 580
Bsp143I	GATC	6 cut(s)	267, 559, 642, 853, 1059, 1063
BspACI	CCGC	1 cut(s)	689
BspANI	GGCC	2 cut(s)	219, 436
BspCNI	CTCAG	1 cut(s)	551
BspDI	ATCGAT	1 cut(s)	1062
BspLI	GGNNCC	4 cut(s)	6, 102, 402, 778
BspOI	GCTAGC	1 cut(s)	821
BspPI	GGATC	1 cut(s)	275
BspQI	GCTCTTC	2 cut(s)	599, 797
BspT107I	GGYRCC	1 cut(s)	400
BspTNI	GGTCTC	1 cut(s)	242
BsrI	ACTGG	4 cut(s)	102, 457, 626, 700
BssECI	CCNNGG	5 cut(s)	220, 345, 410, 463, 513
BssMI	GATC	6 cut(s)	267, 559, 642, 853, 1059, 1063
BssT1I	CCWWGG	1 cut(s)	463
Bst2UI	CCWGG	3 cut(s)	221, 683, 789
Bst4CI	ACNGT	3 cut(s)	263, 379, 934
Bst6I	CTCTTC	4 cut(s)	281, 599, 705, 797
BstAPI	GCANNNNNTGC	1 cut(s)	379
BstC8I	GCNNGC	3 cut(s)	384, 535, 819
BstDEI	CTNAG	1 cut(s)	538
BstDSI	CCRYGG	1 cut(s)	513
BstF5I	GGATG	4 cut(s)	85, 691, 871, 1056
BstKTI	GATC	6 cut(s)	270, 562, 645, 856, 1062, 1066
BstMAI	GTCTC	1 cut(s)	242
BstMBI	GATC	6 cut(s)	267, 559, 642, 853, 1059, 1063
BstMCI	CGRYCG	1 cut(s)	265
BstMWI	GCNNNNNNNGC	1 cut(s)	379
BstNI	CCWGG	3 cut(s)	221, 683, 789
BstSCI	CCNGG	5 cut(s)	219, 345, 409, 681, 787
BstSLI	GKGCMC	1 cut(s)	18
BstV1I	GCAGC	1 cut(s)	596
BstV2I	GAAGAC	2 cut(s)	264, 648
BstXI	CCANNNNNNTGG	1 cut(s)	587
Bsu15I	ATCGAT	1 cut(s)	1062
BsuI	GTATCC	1 cut(s)	766
BsuRI	GGCC	2 cut(s)	219, 436
BsuTUI	ATCGAT	1 cut(s)	1062
BtgI	CCRYGG	1 cut(s)	513
BtgZI	GCGATG	1 cut(s)	554
BtsCI	GGATG	4 cut(s)	85, 691, 871, 1056
BtsI	GCAGTG	1 cut(s)	915
BtsIMutI	CAGTG	2 cut(s)	95, 915
Cac8I	GCNNGC	3 cut(s)	384, 535, 819
CaiI	CAGNNNCTG	1 cut(s)	482
ClaI	ATCGAT	1 cut(s)	1062
Csp6I	GTAC	2 cut(s)	401, 450
CviAII	CATG	1 cut(s)	944
CviQI	GTAC	2 cut(s)	401, 450
DdeI	CTNAG	1 cut(s)	538
DpnI	GATC	6 cut(s)	269, 561, 644, 855, 1061, 1065
DpnII	GATC	6 cut(s)	267, 559, 642, 853, 1059, 1063
EaeI	YGGCCR	1 cut(s)	217
Eam1104I	CTCTTC	4 cut(s)	281, 599, 705, 797
EarI	CTCTTC	4 cut(s)	281, 599, 705, 797
Ecl136II	GAGCTC	1 cut(s)	85
Eco130I	CCWWGG	1 cut(s)	463
Eco147I	AGGCCT	1 cut(s)	436
Eco24I	GRGCYC	2 cut(s)	87, 580
Eco31I	GGTCTC	1 cut(s)	242
Eco53kI	GAGCTC	1 cut(s)	85
Eco57I	CTGAAG	2 cut(s)	459, 756
EcoICRI	GAGCTC	1 cut(s)	85
EcoRII	CCWGG	3 cut(s)	219, 681, 787
EcoT14I	CCWWGG	1 cut(s)	463
EcoT38I	GRGCYC	2 cut(s)	87, 580
ErhI	CCWWGG	1 cut(s)	463
FaeI	CATG	1 cut(s)	947
FalI	AAGNNNNNCTT	2 cut(s)	983, 1015
FaqI	GGGAC	2 cut(s)	237, 916
FatI	CATG	1 cut(s)	943
FauNDI	CATATG	1 cut(s)	809
FbaI	TGATCA	1 cut(s)	559
Fnu4HI	GCNGC	2 cut(s)	610, 690
FokI	GGATG	4 cut(s)	92, 698, 878, 1063
FriOI	GRGCYC	2 cut(s)	87, 580
Fsp4HI	GCNGC	2 cut(s)	610, 690
FspBI	CTAG	1 cut(s)	818
GluI	GCNGC	2 cut(s)	610, 690
GsaI	CCCAGC	1 cut(s)	204
GsuI	CTGGAG	1 cut(s)	609
HaeIII	GGCC	2 cut(s)	219, 436
HapII	CCGG	2 cut(s)	347, 410
Hin1II	CATG	1 cut(s)	947
HindIII	AAGCTT	1 cut(s)	992
HinfI	GANTC	4 cut(s)	90, 205, 792, 1082
HpaII	CCGG	2 cut(s)	347, 410
HphI	GGTGA	1 cut(s)	21
Hpy166II	GTNNAC	1 cut(s)	16
Hpy188I	TCNGA	4 cut(s)	89, 267, 281, 670
Hpy188III	TCNNGA	4 cut(s)	482, 774, 845, 1091
Hpy8I	GTNNAC	1 cut(s)	16
HpyAV	CCTTC	5 cut(s)	18, 30, 227, 351, 1036
HpyCH4III	ACNGT	3 cut(s)	263, 379, 934
HpyCH4IV	ACGT	2 cut(s)	491, 850
HpyCH4V	TGCA	6 cut(s)	16, 132, 307, 317, 612, 897
HpyF10VI	GCNNNNNNNGC	1 cut(s)	379
HpyF3I	CTNAG	1 cut(s)	538
HpySE526I	ACGT	2 cut(s)	491, 850
Hsp92II	CATG	1 cut(s)	947
KpnI	GGTACC	1 cut(s)	404
Ksp22I	TGATCA	1 cut(s)	559
Kzo9I	GATC	6 cut(s)	267, 559, 642, 853, 1059, 1063
LguI	GCTCTTC	2 cut(s)	599, 797
LmnI	GCTCC	4 cut(s)	10, 349, 419, 484
Lsp1109I	GCAGC	1 cut(s)	596
LweI	GCATC	1 cut(s)	676
MaeI	CTAG	1 cut(s)	818
MaeII	ACGT	2 cut(s)	491, 850
MaeIII	GTNAC	3 cut(s)	725, 824, 934
MalI	GATC	6 cut(s)	269, 561, 644, 855, 1061, 1065
MboI	GATC	6 cut(s)	267, 559, 642, 853, 1059, 1063
MhlI	GDGCHC	3 cut(s)	18, 87, 580
MlsI	TGGCCA	1 cut(s)	219
MluCI	AATT	4 cut(s)	211, 353, 520, 616
MluNI	TGGCCA	1 cut(s)	219
MmeI	TCCRAC	5 cut(s)	128, 245, 304, 1028, 1054
Mox20I	TGGCCA	1 cut(s)	219
MroXI	GAANNNNTTC	1 cut(s)	1081
MscI	TGGCCA	1 cut(s)	219
MseI	TTAA	3 cut(s)	369, 918, 1007
MslI	CAYNNNNRTG	1 cut(s)	585
Msp20I	TGGCCA	1 cut(s)	219
MspI	CCGG	2 cut(s)	347, 410
MspR9I	CCNGG	5 cut(s)	221, 347, 411, 683, 789
Mva1269I	GAATGC	1 cut(s)	980
MvaI	CCWGG	3 cut(s)	221, 683, 789
MwoI	GCNNNNNNNGC	1 cut(s)	379
NciI	CCSGG	2 cut(s)	347, 411
NdeI	CATATG	1 cut(s)	809
NdeII	GATC	6 cut(s)	267, 559, 642, 853, 1059, 1063
NheI	GCTAGC	1 cut(s)	817
NlaIII	CATG	1 cut(s)	947
NlaIV	GGNNCC	4 cut(s)	6, 102, 402, 778
NmeAIII	GCCGAG	1 cut(s)	599
NmuCI	GTSAC	2 cut(s)	824, 934
OliI	CACNNNNGTG	1 cut(s)	585
PceI	AGGCCT	1 cut(s)	436
PciSI	GCTCTTC	2 cut(s)	599, 797
PctI	GAATGC	1 cut(s)	980
PdmI	GAANNNNTTC	1 cut(s)	1081
PfeI	GAWTC	4 cut(s)	90, 205, 792, 1082
PfoI	TCCNGGA	1 cut(s)	681
PkrI	GCNGC	2 cut(s)	611, 691
Psp124BI	GAGCTC	1 cut(s)	87
Psp6I	CCWGG	3 cut(s)	219, 681, 787
PspFI	CCCAGC	1 cut(s)	200
PspGI	CCWGG	3 cut(s)	219, 681, 787
PspN4I	GGNNCC	4 cut(s)	6, 102, 402, 778
PstNI	CAGNNNCTG	1 cut(s)	482
RsaI	GTAC	2 cut(s)	402, 451
RsaNI	GTAC	2 cut(s)	401, 450
RseI	CAYNNNNRTG	1 cut(s)	585
SacI	GAGCTC	1 cut(s)	87
SapI	GCTCTTC	2 cut(s)	599, 797
SaqAI	TTAA	3 cut(s)	369, 918, 1007
SatI	GCNGC	2 cut(s)	610, 690
Sau3AI	GATC	6 cut(s)	267, 559, 642, 853, 1059, 1063
ScrFI	CCNGG	5 cut(s)	221, 347, 411, 683, 789
SduI	GDGCHC	3 cut(s)	18, 87, 580
SfaNI	GCATC	1 cut(s)	676
SmiMI	CAYNNNNRTG	1 cut(s)	585
SmlI	CTYRAG	1 cut(s)	239
SmoI	CTYRAG	1 cut(s)	239
Sse9I	AATT	4 cut(s)	211, 353, 520, 616
SseBI	AGGCCT	1 cut(s)	436
SsiI	CCGC	1 cut(s)	689
SspI	AATATT	1 cut(s)	1015
SspMI	CTAG	1 cut(s)	818
SstI	GAGCTC	1 cut(s)	87
StuI	AGGCCT	1 cut(s)	436
StyD4I	CCNGG	5 cut(s)	219, 345, 409, 681, 787
StyI	CCWWGG	1 cut(s)	463
TaaI	ACNGT	3 cut(s)	263, 379, 934
TaiI	ACGT	2 cut(s)	494, 853
TaqI	TCGA	4 cut(s)	645, 708, 1032, 1062
TasI	AATT	4 cut(s)	211, 353, 520, 616
TauI	GCSGC	1 cut(s)	692
TfiI	GAWTC	4 cut(s)	90, 205, 792, 1082
Tru1I	TTAA	3 cut(s)	369, 918, 1007
Tru9I	TTAA	3 cut(s)	369, 918, 1007
TscAI	CASTG	2 cut(s)	102, 915
TseFI	GTSAC	2 cut(s)	824, 934
TseI	GCWGC	1 cut(s)	609
Tsp45I	GTSAC	2 cut(s)	824, 934
TspDTI	ATGAA	3 cut(s)	15, 69, 724
TspRI	CASTG	2 cut(s)	102, 915
VneI	GTGCAC	1 cut(s)	14
XmnI	GAANNNNTTC	1 cut(s)	1081
XspI	CTAG	1 cut(s)	818

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.