Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0002089

Physical Location & Seq

Genomic Coordinates Forward (+)

16665684 .. 16669098

Gene Structure 3415 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G155300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1080 bp

ATGCGTCCTTCCCCTGCTCTGCAAGCAATTTCTGAATCTGCTGTTCAAAGTCATGAAGCAGATGAAAAGCATGGTGATGCCATGAACTGGGATGAACTTGAATTTGGAGTAATTCCAACAGATTACATGTACATTATGAAATGTTCCAATGGGGATAACTTTTCACAAGGCCACCTCGCTCCCTATGGGAAAATTGAGCTCAGCCCATTTTCTGGAATCTTGAATTATGGACAGGGAGTATTAGAAGGTCTTAAAGCGATCAGGACCAAAGACGGTCGTGTTCAGCTGTTCCGGCCTCAAGAGAATGCTCTAAGAATGAAGATGAGTGCAGAGAGATTGTGCATGCCATCTCCATCTACTCACCAATTCCTTGATGCTTTAAAGCAAACTGTCCTTGCCAACAAGCGTTGGGTACCACCTGAAGGGAAAGGAGCATTGTATATTAGGCCATTGCTCATTGGAAGTGGCCCTGTTCTTGGCCTAGGACCAGCACCAGAATACACATTCCTAATATTTGCTACTCCAGTTGGTAATTATCACAAACGTGGCTCCACCATGAATTTGTACATAGAGAATGAGGTTCGAAGGGCCACACCAGGAGGAACTGGAGGCGTCAAAAGCATTACCAACTATTCACCTGTTTTTGAAGTAGTGACGAAGGCTAGGGCCAAAGGGTTCACTGATGTCCTGTTTCTGGATGCAGCCACTGGAAAAAATATCGAGGAGGTTTCTTCATGTAATATTTTCTTTGTGAAGGATAATGTGATTTTAACTCCACGTACCAGTGGAACTGTTCTTCCAGGGGTCACAAGAAAAAGCATCATAGAAATTGCTCGTGATCGAAATTACATGGTGGAGGAACGTGATGTTCCACTAGAGGATGTGTTGGCTGCCGATGAAGTTTTCTGTACAGGGACTGCAGTGGAAGTCACTGCTGTTGCTAGTATAACACATCAAGATAAAAGGATCGAATACAGAACAGGGGAAGAAACTGTGTTCCACAAACTGCGTGTAGTGCTTAAAGAGATTCAAACAGGTGTGGTTGAGGACAAGATGGGTTGGACCGTGCTCATTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00270 ko00280 ko00290 ko00770 ko01100 ko01110 ko01130 ko01210 ko01230 map00270 map00280 map00290 map00770 map01100 map01110 map01130 map01210 map01230

Pfam Domains

Protein Families

Aminotran_4

Protein Analysis

360

Amino Acids

39.65

Weight (kDa)

6.05

Isoelectric Point (pI)

55.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002089)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50090 AT1G50110 AT1G50110
fragaria_vesca	FvH4_2g02760 FvH4_2g02870 FvH4_2g02870
malus_domestica	MD05G1110500.v1.1 MD10G1114000.v1.1
prunus_persica	Prupe.8G155300_v2.0.a1 Prupe.8G155500_v2.0.a1
pyrus_communis	pycom05g10650
rosa_chinensis	RchiOBHm_Chr6g0247221 RchiOBHm_Chr6g0247281 RchiOBHm_Chr6g0247341
rosa_laevigata	RLG00000015207 RLG00000015210
rosa_multiflora	Rmu_sc0000745.1_g000026 Rmu_sc0003226.1_g000006 Rmu_sc0004368.1_g000005 Rmu_sc0004368.1_g000016
rosa_roxburghii	Rroxscaffold_180G00433530 Rroxscaffold_180G00433590 Rroxscaffold_7G00214080 Rroxscaffold_7G00214230
rosa_rugosa	Rorug05G0524400 Rorug05G0524700 Rorug05G0524700 Rorug05G0524800 Rorug05G0524900 Rorug05G0525000 Rorug05G0525100 Rorug05G0525200 Rorug05G0525300
rosa_samantha	Rh6AG038600 Rh6AG039200 Rh6AG039600 Rh6AG040300 Rh6CG034300 Rh6CG034700 Rh6DG031900 Rh6DG032500
rosa_wichuraiana	Rw6G003320 Rw6G003390 Rw6G003460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	412
AccB1I	GGYRCC	1 cut(s)	412
AccB7I	CCANNNNNTGG	2 cut(s)	87, 212
AclWI	GGATC	1 cut(s)	974
AcsI	RAATTY	2 cut(s)	101, 559
AcuI	CTGAAG	1 cut(s)	441
AcyI	GRCGYC	1 cut(s)	612
AfaI	GTAC	5 cut(s)	131, 414, 566, 781, 910
AfiI	CCNNNNNNNGG	5 cut(s)	87, 212, 422, 476, 694
AflIII	ACRYGT	1 cut(s)	126
AgsI	TTSAA	5 cut(s)	47, 101, 223, 647, 1031
AjnI	CCWGG	2 cut(s)	595, 799
AjuI	GAANNNNNNNTTGG	2 cut(s)	87, 119
AleI	CACNNNNGTG	1 cut(s)	543
AloI	GAACNNNNNNTCC	2 cut(s)	781, 813
AluBI	AGCT	2 cut(s)	199, 286
AluI	AGCT	2 cut(s)	199, 286
Alw21I	GWGCWC	2 cut(s)	201, 1071
AlwI	GGATC	1 cut(s)	974
AlwNI	CAGNNNCTG	2 cut(s)	707, 917
AoxI	GGCC	7 cut(s)	169, 293, 446, 466, 478, 588, 666
ApeKI	GCWGC	2 cut(s)	701, 890
ApoI	RAATTY	2 cut(s)	101, 559
Asp718I	GGTACC	1 cut(s)	412
AspA2I	CCTAGG	1 cut(s)	481
AspS9I	GGNCC	6 cut(s)	264, 467, 485, 588, 666, 1062
AsuHPI	GGTGA	3 cut(s)	86, 353, 627
AsuII	TTCGAA	1 cut(s)	583
AvaII	GGWCC	3 cut(s)	264, 485, 1062
AvrII	CCTAGG	1 cut(s)	481
BanI	GGYRCC	1 cut(s)	412
BanII	GRGCYC	1 cut(s)	201
BauI	CACGAG	1 cut(s)	834
Bbv12I	GWGCWC	2 cut(s)	201, 1071
BbvI	GCAGC	2 cut(s)	713, 877
BccI	CCATC	3 cut(s)	355, 361, 1048
BciT130I	CCWGG	2 cut(s)	597, 801
BfaI	CTAG	4 cut(s)	482, 663, 875, 942
BfmI	CTRYAG	1 cut(s)	918
BisI	GCNGC	2 cut(s)	702, 891
BlnI	CCTAGG	1 cut(s)	481
BlpI	GCTNAGC	1 cut(s)	200
BlsI	GCNGC	2 cut(s)	703, 892
Bme1390I	CCNGG	2 cut(s)	597, 801
Bme18I	GGWCC	3 cut(s)	264, 485, 1062
BmgT120I	GGNCC	6 cut(s)	264, 467, 485, 588, 666, 1062
BmiI	GGNNCC	2 cut(s)	414, 550
BmrFI	CCNGG	2 cut(s)	597, 801
BmrI	ACTGGG	1 cut(s)	97
BmsI	GCATC	4 cut(s)	67, 364, 688, 828
BmuI	ACTGGG	1 cut(s)	97
BpmI	CTGGAG	2 cut(s)	507, 627
Bpu1102I	GCTNAGC	1 cut(s)	200
Bpu14I	TTCGAA	1 cut(s)	583
BpuEI	CTTGAG	1 cut(s)	282
BsaAI	YACGTR	1 cut(s)	779
BsaHI	GRCGYC	1 cut(s)	612
BsaJI	CCNNGG	2 cut(s)	481, 800
Bsc4I	CCNNNNNNNGG	5 cut(s)	87, 212, 422, 476, 694
Bse1I	ACTGG	5 cut(s)	92, 524, 610, 712, 783
Bse3DI	GCAATG	1 cut(s)	449
BseBI	CCWGG	2 cut(s)	597, 801
BseDI	CCNNGG	2 cut(s)	481, 800
BseGI	GGATG	3 cut(s)	97, 703, 886
BseLI	CCNNNNNNNGG	5 cut(s)	87, 212, 422, 476, 694
BseMI	GCAATG	1 cut(s)	449
BseMII	CTCAG	1 cut(s)	214
BseNI	ACTGG	5 cut(s)	92, 524, 610, 712, 783
BseRI	GAGGAG	1 cut(s)	737
BseXI	GCAGC	2 cut(s)	713, 877
BsgI	GTGCAG	1 cut(s)	348
Bsh1285I	CGRYCG	1 cut(s)	277
BshFI	GGCC	7 cut(s)	171, 295, 448, 468, 480, 590, 668
BshNI	GGYRCC	1 cut(s)	412
BsiEI	CGRYCG	1 cut(s)	277
BsiHKAI	GWGCWC	2 cut(s)	201, 1071
BsiSI	CCGG	1 cut(s)	292
BslFI	GGGAC	1 cut(s)	928
BslI	CCNNNNNNNGG	5 cut(s)	87, 212, 422, 476, 694
BsmFI	GGGAC	1 cut(s)	928
BsmI	GAATGC	1 cut(s)	310
BsnI	GGCC	7 cut(s)	171, 295, 448, 468, 480, 590, 668
Bsp119I	TTCGAA	1 cut(s)	583
Bsp1286I	GDGCHC	2 cut(s)	201, 1071
Bsp1407I	TGTACA	3 cut(s)	129, 564, 908
Bsp143I	GATC	3 cut(s)	258, 838, 966
Bsp1720I	GCTNAGC	1 cut(s)	200
BspANI	GGCC	7 cut(s)	171, 295, 448, 468, 480, 590, 668
BspCNI	CTCAG	1 cut(s)	213
BspHI	TCATGA	1 cut(s)	52
BspLI	GGNNCC	2 cut(s)	414, 550
BspMAI	CTGCAG	1 cut(s)	922
BspPI	GGATC	1 cut(s)	974
BspT104I	TTCGAA	1 cut(s)	583
BspT107I	GGYRCC	1 cut(s)	412
BsrDI	GCAATG	1 cut(s)	449
BsrGI	TGTACA	3 cut(s)	129, 564, 908
BsrI	ACTGG	5 cut(s)	92, 524, 610, 712, 783
BssECI	CCNNGG	2 cut(s)	481, 800
BssMI	GATC	3 cut(s)	258, 838, 966
BssNI	GRCGYC	1 cut(s)	612
BssSI	CACGAG	1 cut(s)	834
BssT1I	CCWWGG	1 cut(s)	481
Bst2BI	CACGAG	1 cut(s)	834
Bst2UI	CCWGG	2 cut(s)	597, 801
Bst4CI	ACNGT	5 cut(s)	275, 391, 793, 994, 1066
BstACI	GRCGYC	1 cut(s)	612
BstAUI	TGTACA	3 cut(s)	129, 564, 908
BstBAI	YACGTR	1 cut(s)	779
BstBI	TTCGAA	1 cut(s)	583
BstC8I	GCNNGC	2 cut(s)	24, 344
BstDEI	CTNAG	2 cut(s)	200, 311
BstF5I	GGATG	3 cut(s)	97, 703, 886
BstKTI	GATC	3 cut(s)	261, 841, 969
BstMBI	GATC	3 cut(s)	258, 838, 966
BstMCI	CGRYCG	1 cut(s)	277
BstMWI	GCNNNNNNNGC	4 cut(s)	23, 292, 618, 1015
BstNI	CCWGG	2 cut(s)	597, 801
BstNSI	RCATGY	2 cut(s)	130, 346
BstSCI	CCNGG	2 cut(s)	595, 799
BstSFI	CTRYAG	1 cut(s)	918
BstV1I	GCAGC	2 cut(s)	713, 877
BsuRI	GGCC	7 cut(s)	171, 295, 448, 468, 480, 590, 668
BtsCI	GGATG	3 cut(s)	97, 703, 886
BtsI	GCAGTG	2 cut(s)	927, 930
BtsIMutI	CAGTG	5 cut(s)	678, 705, 790, 927, 930
Cac8I	GCNNGC	2 cut(s)	24, 344
CaiI	CAGNNNCTG	2 cut(s)	707, 917
CciI	TCATGA	1 cut(s)	52
Cfr13I	GGNCC	6 cut(s)	264, 467, 485, 588, 666, 1062
CseI	GACGC	1 cut(s)	601
Csp6I	GTAC	5 cut(s)	130, 413, 565, 780, 909
CviAII	CATG	8 cut(s)	53, 71, 82, 127, 343, 556, 735, 850
CviQI	GTAC	5 cut(s)	130, 413, 565, 780, 909
DdeI	CTNAG	2 cut(s)	200, 311
DpnI	GATC	3 cut(s)	260, 840, 968
DpnII	GATC	3 cut(s)	258, 838, 966
DraI	TTTAAA	1 cut(s)	381
Ecl136II	GAGCTC	1 cut(s)	199
Eco130I	CCWWGG	1 cut(s)	481
Eco24I	GRGCYC	1 cut(s)	201
Eco47I	GGWCC	3 cut(s)	264, 485, 1062
Eco53kI	GAGCTC	1 cut(s)	199
Eco57I	CTGAAG	1 cut(s)	441
EcoICRI	GAGCTC	1 cut(s)	199
EcoRII	CCWGG	2 cut(s)	595, 799
EcoT14I	CCWWGG	1 cut(s)	481
EcoT38I	GRGCYC	1 cut(s)	201
ErhI	CCWWGG	1 cut(s)	481
FaeI	CATG	8 cut(s)	56, 74, 85, 130, 346, 559, 738, 853
FaqI	GGGAC	1 cut(s)	928
FatI	CATG	8 cut(s)	52, 70, 81, 126, 342, 555, 734, 849
Fnu4HI	GCNGC	2 cut(s)	702, 891
FokI	GGATG	3 cut(s)	104, 710, 893
FriOI	GRGCYC	1 cut(s)	201
Fsp4HI	GCNGC	2 cut(s)	702, 891
FspBI	CTAG	4 cut(s)	482, 663, 875, 942
GluI	GCNGC	2 cut(s)	702, 891
GsuI	CTGGAG	2 cut(s)	507, 627
HaeIII	GGCC	7 cut(s)	171, 295, 448, 468, 480, 590, 668
HapII	CCGG	1 cut(s)	292
HgaI	GACGC	1 cut(s)	601
Hin1I	GRCGYC	1 cut(s)	612
Hin1II	CATG	8 cut(s)	56, 74, 85, 130, 346, 559, 738, 853
HinfI	GANTC	3 cut(s)	35, 216, 1027
HpaII	CCGG	1 cut(s)	292
HphI	GGTGA	3 cut(s)	86, 353, 627
Hpy166II	GTNNAC	1 cut(s)	678
Hpy188I	TCNGA	1 cut(s)	34
Hpy188III	TCNNGA	8 cut(s)	53, 213, 220, 262, 299, 695, 836, 956
Hpy8I	GTNNAC	1 cut(s)	678
HpyAV	CCTTC	6 cut(s)	18, 239, 416, 579, 652, 748
HpyCH4III	ACNGT	5 cut(s)	275, 391, 793, 994, 1066
HpyCH4IV	ACGT	3 cut(s)	544, 778, 862
HpyCH4V	TGCA	5 cut(s)	22, 329, 342, 701, 920
HpyF10VI	GCNNNNNNNGC	4 cut(s)	23, 292, 618, 1015
HpyF3I	CTNAG	2 cut(s)	200, 311
HpySE526I	ACGT	3 cut(s)	544, 778, 862
Hsp92I	GRCGYC	1 cut(s)	612
Hsp92II	CATG	8 cut(s)	56, 74, 85, 130, 346, 559, 738, 853
KpnI	GGTACC	1 cut(s)	416
Kzo9I	GATC	3 cut(s)	258, 838, 966
LmnI	GCTCC	3 cut(s)	184, 431, 554
Lsp1109I	GCAGC	2 cut(s)	713, 877
LweI	GCATC	4 cut(s)	67, 364, 688, 828
MaeI	CTAG	4 cut(s)	482, 663, 875, 942
MaeII	ACGT	3 cut(s)	544, 778, 862
MaeIII	GTNAC	3 cut(s)	652, 805, 928
MalI	GATC	3 cut(s)	260, 840, 968
MboI	GATC	3 cut(s)	258, 838, 966
MboII	GAAGA	4 cut(s)	331, 723, 788, 998
MhlI	GDGCHC	2 cut(s)	201, 1071
MmeI	TCCRAC	2 cut(s)	140, 1040
MseI	TTAA	4 cut(s)	252, 380, 770, 1020
MslI	CAYNNNNRTG	2 cut(s)	75, 543
MspA1I	CMGCKG	1 cut(s)	286
MspI	CCGG	1 cut(s)	292
MspR9I	CCNGG	2 cut(s)	597, 801
Mva1269I	GAATGC	1 cut(s)	310
MvaI	CCWGG	2 cut(s)	597, 801
MwoI	GCNNNNNNNGC	4 cut(s)	23, 292, 618, 1015
NdeII	GATC	3 cut(s)	258, 838, 966
NlaIII	CATG	8 cut(s)	56, 74, 85, 130, 346, 559, 738, 853
NlaIV	GGNNCC	2 cut(s)	414, 550
NmuCI	GTSAC	3 cut(s)	652, 805, 928
NspI	RCATGY	2 cut(s)	130, 346
NspV	TTCGAA	1 cut(s)	583
OliI	CACNNNNGTG	1 cut(s)	543
PaeI	GCATGC	1 cut(s)	346
PagI	TCATGA	1 cut(s)	52
PciI	ACATGT	1 cut(s)	126
PctI	GAATGC	1 cut(s)	310
PfeI	GAWTC	3 cut(s)	35, 216, 1027
PflMI	CCANNNNNTGG	2 cut(s)	87, 212
PkrI	GCNGC	2 cut(s)	703, 892
Ppu21I	YACGTR	1 cut(s)	779
PscI	ACATGT	1 cut(s)	126
Psp124BI	GAGCTC	1 cut(s)	201
Psp6I	CCWGG	2 cut(s)	595, 799
PspGI	CCWGG	2 cut(s)	595, 799
PspN4I	GGNNCC	2 cut(s)	414, 550
PspPI	GGNCC	6 cut(s)	264, 467, 485, 588, 666, 1062
PstI	CTGCAG	1 cut(s)	922
PstNI	CAGNNNCTG	2 cut(s)	707, 917
PvuII	CAGCTG	1 cut(s)	286
RsaI	GTAC	5 cut(s)	131, 414, 566, 781, 910
RsaNI	GTAC	5 cut(s)	130, 413, 565, 780, 909
RseI	CAYNNNNRTG	2 cut(s)	75, 543
SacI	GAGCTC	1 cut(s)	201
SaqAI	TTAA	4 cut(s)	252, 380, 770, 1020
SatI	GCNGC	2 cut(s)	702, 891
Sau3AI	GATC	3 cut(s)	258, 838, 966
Sau96I	GGNCC	6 cut(s)	264, 467, 485, 588, 666, 1062
ScrFI	CCNGG	2 cut(s)	597, 801
SduI	GDGCHC	2 cut(s)	201, 1071
SfaNI	GCATC	4 cut(s)	67, 364, 688, 828
SfcI	CTRYAG	1 cut(s)	918
SfuI	TTCGAA	1 cut(s)	583
SinI	GGWCC	3 cut(s)	264, 485, 1062
SmiMI	CAYNNNNRTG	2 cut(s)	75, 543
SmlI	CTYRAG	1 cut(s)	297
SmoI	CTYRAG	1 cut(s)	297
SphI	GCATGC	1 cut(s)	346
SspI	AATATT	2 cut(s)	513, 742
SspMI	CTAG	4 cut(s)	482, 663, 875, 942
SstI	GAGCTC	1 cut(s)	201
StyD4I	CCNGG	2 cut(s)	595, 799
StyI	CCWWGG	1 cut(s)	481
TaaI	ACNGT	5 cut(s)	275, 391, 793, 994, 1066
TaiI	ACGT	3 cut(s)	547, 781, 865
TaqI	TCGA	4 cut(s)	583, 720, 841, 969
TatI	WGTACW	3 cut(s)	129, 564, 908
TfiI	GAWTC	3 cut(s)	35, 216, 1027
Tru1I	TTAA	4 cut(s)	252, 380, 770, 1020
Tru9I	TTAA	4 cut(s)	252, 380, 770, 1020
TscAI	CASTG	5 cut(s)	685, 712, 790, 927, 937
TseFI	GTSAC	3 cut(s)	652, 805, 928
TseI	GCWGC	2 cut(s)	701, 890
Tsp45I	GTSAC	3 cut(s)	652, 805, 928
TspDTI	ATGAA	9 cut(s)	69, 78, 98, 108, 152, 332, 572, 723, 912
TspRI	CASTG	5 cut(s)	685, 712, 790, 927, 937
Van91I	CCANNNNNTGG	2 cut(s)	87, 212
VpaK11BI	GGWCC	3 cut(s)	264, 485, 1062
XapI	RAATTY	2 cut(s)	101, 559
XceI	RCATGY	2 cut(s)	130, 346
XmaJI	CCTAGG	1 cut(s)	481
XspI	CTAG	4 cut(s)	482, 663, 875, 942

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.