RLG00000015207

Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0002089
Physical Location & Seq
Forward (+)
63087580 .. 63089798
2219 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000015207

Sequence Viewer

Length: 999 bp
ATGTCTTCTTCAGCTTTGCAAACAACTGGTGAATCCAACAATCACAGTCTGAAAAACGGTGAAATGTATGCTGATGGCATTAACTGGGATGATCTTGGGTTTGGACTGATTCCAATCGATTACATGTACACCATGAAATGCTCCGACGGAGAAAATTTTTCACAAGGACATCTCTCTCCCTTTGGAAAGATTGAGCTTTGCCCATCTGCTGGAATATTGAATTATGGACAGGGACTATTCGAAGGTCTTAAGGCGACCAGAACAGAAGATGGTCGTACTATGCTGTTTCGGCCCCAAGAGAATGCTCTAAGAATGAAGATGGGTGCAGAGAGAATGTGCATGCCATCTCCATCCGTTGAGCAATTTGTTGATGCTGTGAAGCAAACAGTCTTCGCCAACAAGCGTTGGGTACCACCTCCAGGAAAAGGATCACTGTATATTAGGCCTTTGCTCGTGGGGAGTGGATCTAATCTGGGCTTGGGCCCGGGACTGGAGTATACATTCCTAATATTTGCTTCTCCAGTTGGTAATTATCACAAGGGAAGGGCAGCCCTCAATTTGTATGTTGAGCATAAAATCCACAGAGCTACTCCTGGTGGAACTGGAGGTGTCAAGTCTGTCACCAATTACTCACCTGTTTACCAAACACAACAGCAAGCAAGGGCCAAGGGGTTCTCTGATGTCTTATTCCTAGATTCTGCAACTGGTAAAAACATTGAGGAGATTGTAGCAGCTAACATTTTCATTCTGAAGGGTAATGTCATTTCAACTCCAACACTGAAACATGGAACTATCCTCCCTGGAGTAACCCGTAAAAGCATCATTGACATTGCCCTTGATTTTGGTTACCAGGTGGAGGAGCGTGTGATCCCAGTGGAGGATTTACTTGCAGCTGATGAAGCTTTCTGCACAGGAACTGCCGTGGTTGTCAACCCTATTGGCGCTGTAACTTATCAAGACAAGAGGCAAGTGCAACACCCCATTGATCCTAATAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00270 ko00280 ko00290 ko00770 ko01100 ko01110 ko01130 ko01210 ko01230 map00270 map00280 map00290 map00770 map01100 map01110 map01130 map01210 map01230
Pfam Domains
Protein Families
Aminotran_4

Protein Analysis

333

Amino Acids

36.08

Weight (kDa)

6.39

Isoelectric Point (pI)

45.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aminotran_4 PF01063 78 - 314 1.2e-31 Amino-transferase class IV
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 409
AccB1I GGYRCC 1 cut(s) 409
AccB7I CCANNNNNTGG 1 cut(s) 209
AccI GTMKAC 1 cut(s) 497
AclWI GGATC 4 cut(s) 436, 472, 862, 980
AcsI RAATTY 1 cut(s) 154
AcuI CTGAAG 1 cut(s) 770
AfaI GTAC 3 cut(s) 128, 277, 411
AfiI CCNNNNNNNGG 6 cut(s) 209, 419, 425, 490, 856, 877
AflII CTTAAG 1 cut(s) 248
AflIII ACRYGT 1 cut(s) 123
AgsI TTSAA 2 cut(s) 220, 768
AjnI CCWGG 4 cut(s) 418, 592, 799, 849
AluBI AGCT 6 cut(s) 14, 196, 587, 734, 893, 902
AluI AGCT 6 cut(s) 14, 196, 587, 734, 893, 902
AlwI GGATC 4 cut(s) 436, 472, 862, 980
AlwNI CAGNNNCTG 1 cut(s) 917
Ama87I CYCGRG 1 cut(s) 484
AoxI GGCC 4 cut(s) 290, 443, 481, 663
ApaI GGGCCC 1 cut(s) 485
ApeKI GCWGC 3 cut(s) 548, 731, 890
ApoI RAATTY 1 cut(s) 154
Asp718I GGTACC 1 cut(s) 409
AspLEI GCGC 1 cut(s) 944
AspS9I GGNCC 4 cut(s) 291, 481, 482, 663
AsuC2I CCSGG 2 cut(s) 485, 486
AsuHPI GGTGA 4 cut(s) 41, 71, 613, 624
AsuII TTCGAA 1 cut(s) 240
AvaI CYCGRG 1 cut(s) 484
BaeGI GKGCMC 1 cut(s) 485
BanI GGYRCC 1 cut(s) 409
BanII GRGCYC 1 cut(s) 485
BauI CACGAG 1 cut(s) 452
BbsI GAAGAC 1 cut(s) 382
BbvI GCAGC 3 cut(s) 560, 743, 902
BccI CCATC 6 cut(s) 68, 211, 263, 313, 352, 358
BceAI ACGGC 1 cut(s) 905
BciT130I CCWGG 4 cut(s) 420, 594, 801, 851
BcnI CCSGG 2 cut(s) 485, 486
BfaI CTAG 1 cut(s) 692
BfoI RGCGCY 1 cut(s) 945
BfrI CTTAAG 1 cut(s) 248
BisI GCNGC 3 cut(s) 549, 732, 891
BlsI GCNGC 3 cut(s) 550, 733, 892
Bme1390I CCNGG 6 cut(s) 420, 485, 486, 594, 801, 851
BmeT110I CYCGRG 1 cut(s) 484
BmgT120I GGNCC 4 cut(s) 291, 481, 482, 663
BmiI GGNNCC 3 cut(s) 293, 411, 483
BmrFI CCNGG 6 cut(s) 420, 485, 486, 594, 801, 851
BmrI ACTGGG 2 cut(s) 94, 866
BmsI GCATC 2 cut(s) 361, 828
BmuI ACTGGG 2 cut(s) 94, 866
BpiI GAAGAC 1 cut(s) 382
BpmI CTGGAG 5 cut(s) 402, 504, 512, 624, 822
Bpu14I TTCGAA 1 cut(s) 240
BpuMI CCSGG 2 cut(s) 485, 486
Bsa29I ATCGAT 1 cut(s) 117
BsaBI GATNNNNATC 1 cut(s) 113
BsaJI CCNNGG 4 cut(s) 484, 666, 799, 921
Bsc4I CCNNNNNNNGG 6 cut(s) 209, 419, 425, 490, 856, 877
Bse1I ACTGG 7 cut(s) 31, 89, 495, 521, 607, 709, 872
Bse3DI GCAATG 1 cut(s) 828
Bse8I GATNNNNATC 1 cut(s) 113
BseBI CCWGG 4 cut(s) 420, 594, 801, 851
BseCI ATCGAT 1 cut(s) 117
BseDI CCNNGG 4 cut(s) 484, 666, 799, 921
BseGI GGATG 2 cut(s) 94, 350
BseJI GATNNNNATC 1 cut(s) 113
BseLI CCNNNNNNNGG 6 cut(s) 209, 419, 425, 490, 856, 877
BseMI GCAATG 1 cut(s) 828
BseNI ACTGG 7 cut(s) 31, 89, 495, 521, 607, 709, 872
BseRI GAGGAG 2 cut(s) 734, 872
BseSI GKGCMC 1 cut(s) 485
BseXI GCAGC 3 cut(s) 560, 743, 902
BsgI GTGCAG 2 cut(s) 345, 892
BshFI GGCC 4 cut(s) 292, 445, 483, 665
BshNI GGYRCC 1 cut(s) 409
BshVI ATCGAT 1 cut(s) 117
BsiHKCI CYCGRG 1 cut(s) 484
BsiSI CCGG 1 cut(s) 485
BslFI GGGAC 2 cut(s) 246, 501
BslI CCNNNNNNNGG 6 cut(s) 209, 419, 425, 490, 856, 877
BsmFI GGGAC 2 cut(s) 246, 501
BsmI GAATGC 1 cut(s) 307
BsnI GGCC 4 cut(s) 292, 445, 483, 665
BsoBI CYCGRG 1 cut(s) 484
Bsp119I TTCGAA 1 cut(s) 240
Bsp120I GGGCCC 1 cut(s) 481
Bsp1286I GDGCHC 1 cut(s) 485
Bsp1407I TGTACA 1 cut(s) 126
Bsp143I GATC 5 cut(s) 91, 428, 464, 867, 985
BspANI GGCC 4 cut(s) 292, 445, 483, 665
BspDI ATCGAT 1 cut(s) 117
BspLI GGNNCC 3 cut(s) 293, 411, 483
BspPI GGATC 4 cut(s) 436, 472, 862, 980
BspT104I TTCGAA 1 cut(s) 240
BspT107I GGYRCC 1 cut(s) 409
BspTI CTTAAG 1 cut(s) 248
BsrDI GCAATG 1 cut(s) 828
BsrGI TGTACA 1 cut(s) 126
BsrI ACTGG 7 cut(s) 31, 89, 495, 521, 607, 709, 872
BssECI CCNNGG 4 cut(s) 484, 666, 799, 921
BssMI GATC 5 cut(s) 91, 428, 464, 867, 985
BssNAI GTATAC 1 cut(s) 498
BssSI CACGAG 1 cut(s) 452
BssT1I CCWWGG 1 cut(s) 666
Bst1107I GTATAC 1 cut(s) 498
Bst2BI CACGAG 1 cut(s) 452
Bst2UI CCWGG 4 cut(s) 420, 594, 801, 851
Bst4CI ACNGT 4 cut(s) 47, 59, 388, 435
BstAFI CTTAAG 1 cut(s) 248
BstAUI TGTACA 1 cut(s) 126
BstBI TTCGAA 1 cut(s) 240
BstC8I GCNNGC 2 cut(s) 341, 657
BstDEI CTNAG 1 cut(s) 308
BstDSI CCRYGG 1 cut(s) 921
BstEII GGTNACC 1 cut(s) 845
BstF5I GGATG 2 cut(s) 94, 350
BstH2I RGCGCY 1 cut(s) 945
BstHHI GCGC 1 cut(s) 944
BstKTI GATC 5 cut(s) 94, 431, 467, 870, 988
BstMBI GATC 5 cut(s) 91, 428, 464, 867, 985
BstMWI GCNNNNNNNGC 2 cut(s) 289, 899
BstNI CCWGG 4 cut(s) 420, 594, 801, 851
BstNSI RCATGY 2 cut(s) 127, 343
BstPI GGTNACC 1 cut(s) 845
BstSCI CCNGG 6 cut(s) 418, 483, 484, 592, 799, 849
BstSLI GKGCMC 1 cut(s) 485
BstV1I GCAGC 3 cut(s) 560, 743, 902
BstV2I GAAGAC 1 cut(s) 382
BstX2I RGATCY 1 cut(s) 464
BstYI RGATCY 1 cut(s) 464
BstZ17I GTATAC 1 cut(s) 498
Bsu15I ATCGAT 1 cut(s) 117
BsuRI GGCC 4 cut(s) 292, 445, 483, 665
BsuTUI ATCGAT 1 cut(s) 117
BtgI CCRYGG 1 cut(s) 921
BtsCI GGATG 2 cut(s) 94, 350
BtsIMutI CAGTG 3 cut(s) 431, 776, 879
Cac8I GCNNGC 2 cut(s) 341, 657
CaiI CAGNNNCTG 1 cut(s) 917
CfoI GCGC 1 cut(s) 944
Cfr13I GGNCC 4 cut(s) 291, 481, 482, 663
Cfr9I CCCGGG 1 cut(s) 484
ClaI ATCGAT 1 cut(s) 117
CsiI ACCWGGT 1 cut(s) 849
Csp6I GTAC 3 cut(s) 127, 276, 410
CviAII CATG 4 cut(s) 124, 133, 340, 785
CviQI GTAC 3 cut(s) 127, 276, 410
DdeI CTNAG 1 cut(s) 308
DpnI GATC 5 cut(s) 93, 430, 466, 869, 987
DpnII GATC 5 cut(s) 91, 428, 464, 867, 985
Eco130I CCWWGG 1 cut(s) 666
Eco147I AGGCCT 1 cut(s) 445
Eco24I GRGCYC 1 cut(s) 485
Eco57I CTGAAG 1 cut(s) 770
Eco88I CYCGRG 1 cut(s) 484
Eco91I GGTNACC 1 cut(s) 845
EcoO65I GGTNACC 1 cut(s) 845
EcoRII CCWGG 4 cut(s) 418, 592, 799, 849
EcoT14I CCWWGG 1 cut(s) 666
EcoT38I GRGCYC 1 cut(s) 485
ErhI CCWWGG 1 cut(s) 666
FaeI CATG 4 cut(s) 127, 136, 343, 788
FaqI GGGAC 2 cut(s) 246, 501
FatI CATG 4 cut(s) 123, 132, 339, 784
FblI GTMKAC 1 cut(s) 497
Fnu4HI GCNGC 3 cut(s) 549, 732, 891
FokI GGATG 2 cut(s) 101, 337
FriOI GRGCYC 1 cut(s) 485
Fsp4HI GCNGC 3 cut(s) 549, 732, 891
FspBI CTAG 1 cut(s) 692
GlaI GCGC 1 cut(s) 943
GluI GCNGC 3 cut(s) 549, 732, 891
GsuI CTGGAG 5 cut(s) 402, 504, 512, 624, 822
HaeII RGCGCY 1 cut(s) 945
HaeIII GGCC 4 cut(s) 292, 445, 483, 665
HapII CCGG 1 cut(s) 485
HhaI GCGC 1 cut(s) 944
Hin1II CATG 4 cut(s) 127, 136, 343, 788
Hin6I GCGC 1 cut(s) 942
HinP1I GCGC 1 cut(s) 942
HincII GTYRAC 1 cut(s) 931
HindII GTYRAC 1 cut(s) 931
HindIII AAGCTT 1 cut(s) 900
HinfI GANTC 3 cut(s) 32, 109, 695
HpaII CCGG 1 cut(s) 485
HphI GGTGA 4 cut(s) 41, 71, 613, 624
Hpy166II GTNNAC 4 cut(s) 129, 498, 640, 931
Hpy188I TCNGA 4 cut(s) 51, 145, 679, 750
Hpy188III TCNNGA 1 cut(s) 956
Hpy8I GTNNAC 4 cut(s) 129, 498, 640, 931
Hpy99I CGWCG 1 cut(s) 149
HpyAV CCTTC 3 cut(s) 236, 537, 745
HpyCH4III ACNGT 4 cut(s) 47, 59, 388, 435
HpyCH4V TGCA 7 cut(s) 19, 326, 339, 701, 890, 909, 973
HpyF10VI GCNNNNNNNGC 2 cut(s) 289, 899
HpyF3I CTNAG 1 cut(s) 308
Hsp92II CATG 4 cut(s) 127, 136, 343, 788
HspAI GCGC 1 cut(s) 942
KpnI GGTACC 1 cut(s) 413
Kzo9I GATC 5 cut(s) 91, 428, 464, 867, 985
LmnI GCTCC 2 cut(s) 146, 859
Lsp1109I GCAGC 3 cut(s) 560, 743, 902
LweI GCATC 2 cut(s) 361, 828
MabI ACCWGGT 1 cut(s) 849
MaeI CTAG 1 cut(s) 692
MaeIII GTNAC 4 cut(s) 619, 805, 845, 946
MalI GATC 5 cut(s) 93, 430, 466, 869, 987
MboI GATC 5 cut(s) 91, 428, 464, 867, 985
MboII GAAGA 3 cut(s) 278, 328, 382
MflI RGATCY 1 cut(s) 464
MhlI GDGCHC 1 cut(s) 485
MluCI AATT 7 cut(s) 154, 220, 362, 529, 556, 625, 994
MmeI TCCRAC 3 cut(s) 60, 168, 797
MnlI CCTC 8 cut(s) 426, 563, 599, 712, 806, 850, 871, 957
MseI TTAA 2 cut(s) 81, 249
MspA1I CMGCKG 1 cut(s) 893
MspCI CTTAAG 1 cut(s) 248
MspI CCGG 1 cut(s) 485
MspR9I CCNGG 6 cut(s) 420, 485, 486, 594, 801, 851
Mva1269I GAATGC 1 cut(s) 307
MvaI CCWGG 4 cut(s) 420, 594, 801, 851
MwoI GCNNNNNNNGC 2 cut(s) 289, 899
NciI CCSGG 2 cut(s) 485, 486
NdeII GATC 5 cut(s) 91, 428, 464, 867, 985
NlaIII CATG 4 cut(s) 127, 136, 343, 788
NlaIV GGNNCC 3 cut(s) 293, 411, 483
NmuCI GTSAC 1 cut(s) 619
NspI RCATGY 2 cut(s) 127, 343
NspV TTCGAA 1 cut(s) 240
PaeI GCATGC 1 cut(s) 343
PceI AGGCCT 1 cut(s) 445
PciI ACATGT 1 cut(s) 123
PctI GAATGC 1 cut(s) 307
PfeI GAWTC 3 cut(s) 32, 109, 695
PflMI CCANNNNNTGG 1 cut(s) 209
PfoI TCCNGGA 1 cut(s) 418
PkrI GCNGC 3 cut(s) 550, 733, 892
PscI ACATGT 1 cut(s) 123
Psp6I CCWGG 4 cut(s) 418, 592, 799, 849
PspEI GGTNACC 1 cut(s) 845
PspGI CCWGG 4 cut(s) 418, 592, 799, 849
PspN4I GGNNCC 3 cut(s) 293, 411, 483
PspOMI GGGCCC 1 cut(s) 481
PspPI GGNCC 4 cut(s) 291, 481, 482, 663
PstNI CAGNNNCTG 1 cut(s) 917
PsuI RGATCY 1 cut(s) 464
PvuII CAGCTG 1 cut(s) 893
RsaI GTAC 3 cut(s) 128, 277, 411
RsaNI GTAC 3 cut(s) 127, 276, 410
SaqAI TTAA 2 cut(s) 81, 249
SatI GCNGC 3 cut(s) 549, 732, 891
Sau3AI GATC 5 cut(s) 91, 428, 464, 867, 985
Sau96I GGNCC 4 cut(s) 291, 481, 482, 663
ScrFI CCNGG 6 cut(s) 420, 485, 486, 594, 801, 851
SduI GDGCHC 1 cut(s) 485
SexAI ACCWGGT 1 cut(s) 849
SfaNI GCATC 2 cut(s) 361, 828
SfuI TTCGAA 1 cut(s) 240
SmaI CCCGGG 1 cut(s) 486
SmlI CTYRAG 1 cut(s) 248
SmoI CTYRAG 1 cut(s) 248
SphI GCATGC 1 cut(s) 343
Sse9I AATT 7 cut(s) 154, 220, 362, 529, 556, 625, 994
SseBI AGGCCT 1 cut(s) 445
SspI AATATT 2 cut(s) 216, 510
SspMI CTAG 1 cut(s) 692
StuI AGGCCT 1 cut(s) 445
StyD4I CCNGG 6 cut(s) 418, 483, 484, 592, 799, 849
StyI CCWWGG 1 cut(s) 666
TaaI ACNGT 4 cut(s) 47, 59, 388, 435
TaqI TCGA 2 cut(s) 117, 240
TasI AATT 7 cut(s) 154, 220, 362, 529, 556, 625, 994
TatI WGTACW 1 cut(s) 126
TfiI GAWTC 3 cut(s) 32, 109, 695
Tru1I TTAA 2 cut(s) 81, 249
Tru9I TTAA 2 cut(s) 81, 249
TscAI CASTG 3 cut(s) 438, 783, 879
TseFI GTSAC 1 cut(s) 619
TseI GCWGC 3 cut(s) 548, 731, 890
Tsp45I GTSAC 1 cut(s) 619
TspDTI ATGAA 4 cut(s) 149, 329, 733, 912
TspGWI ACGGA 2 cut(s) 162, 343
TspMI CCCGGG 1 cut(s) 484
TspRI CASTG 3 cut(s) 438, 783, 879
Van91I CCANNNNNTGG 1 cut(s) 209
Vha464I CTTAAG 1 cut(s) 248
XapI RAATTY 1 cut(s) 154
XceI RCATGY 2 cut(s) 127, 343
XmaI CCCGGG 1 cut(s) 484
XmiI GTMKAC 1 cut(s) 497
XspI CTAG 1 cut(s) 692
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.