Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004368.1

Orthogroup ID

OG0002089

Physical Location & Seq

Genomic Coordinates Reverse (-)

26915 .. 28939

Gene Structure 2025 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004368.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

atggaagcttcttcaggtttaacgacaacttcggaatctatcaaccacagtgatgatggcgaaaagtatgctaatggtgtcaactgggatgaactggcatttggaataactccaactgattcgatgtataccatgaactgctccgatgaaaataacttttcacaaggacatctcattccctatggaaatattgagctttgtccatctgctggaattttgaattatggacaggtagaagatggtcgtattatgctattccgaccagaagaaaatgctctaagaatgaagatgggtgcagagaggatgtgcatgccatctccatccgttgagcaatttgttgatgctgtgaagcaaactgtcctcgccaataagcgttgggtaccacctccaggaaaaggatcactatacgtcaggcctttgctcatgggaagtggatctgttcttaatgttgggccggcaccagagtacacactcctgatatatgcgtctccggttggtaattcttctccagtaggtaattaccacaagggaaggccatccctgaacttgtatgttgaggataaactccctagagctactcccggtggaactggagggataaagtctatcaccaattacgcacccgtttatcaggcacaaaagcaagcaagagccaaaggattctctgatgttttatacctagattctgtaactggtaaaaacattgaggagatttcagctgctaacattttcattgtgaaggataatgttgtatccactccagcattagtacatggaactattcttcccggagttactcgtaaaagcataatggagattgcccttcatttaggttaccaggtgaacatcatttcctctctatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00270 ko00280 ko00290 ko00770 ko01100 ko01110 ko01130 ko01210 ko01230 map00270 map00280 map00290 map00770 map01100 map01110 map01130 map01210 map01230

Pfam Domains

Protein Families

Aminotran_4

Protein Analysis

287

Amino Acids

31.0

Weight (kDa)

5.77

Isoelectric Point (pI)

52.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002089)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50090 AT1G50110 AT1G50110
fragaria_vesca	FvH4_2g02760 FvH4_2g02870 FvH4_2g02870
malus_domestica	MD05G1110500.v1.1 MD10G1114000.v1.1
prunus_persica	Prupe.8G155300_v2.0.a1 Prupe.8G155500_v2.0.a1
pyrus_communis	pycom05g10650
rosa_chinensis	RchiOBHm_Chr6g0247221 RchiOBHm_Chr6g0247281 RchiOBHm_Chr6g0247341
rosa_laevigata	RLG00000015207 RLG00000015210
rosa_multiflora	Rmu_sc0000745.1_g000026 Rmu_sc0003226.1_g000006 Rmu_sc0004368.1_g000005 Rmu_sc0004368.1_g000016
rosa_roxburghii	Rroxscaffold_180G00433530 Rroxscaffold_180G00433590 Rroxscaffold_7G00214080 Rroxscaffold_7G00214230
rosa_rugosa	Rorug05G0524400 Rorug05G0524700 Rorug05G0524700 Rorug05G0524800 Rorug05G0524900 Rorug05G0525000 Rorug05G0525100 Rorug05G0525200 Rorug05G0525300
rosa_samantha	Rh6AG038600 Rh6AG039200 Rh6AG039600 Rh6AG040300 Rh6CG034300 Rh6CG034700 Rh6DG031900 Rh6DG032500
rosa_wichuraiana	Rw6G003320 Rw6G003390 Rw6G003460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	379
AccB1I	GGYRCC	2 cut(s)	379, 457
AccB7I	CCANNNNNTGG	1 cut(s)	209
AccI	GTMKAC	1 cut(s)	128
AclWI	GGATC	2 cut(s)	406, 442
AcsI	RAATTY	1 cut(s)	213
AfaI	GTAC	3 cut(s)	381, 467, 771
AfiI	CCNNNNNNNGG	3 cut(s)	209, 389, 395
AgsI	TTSAA	1 cut(s)	220
AjnI	CCWGG	2 cut(s)	388, 837
AjuI	GAANNNNNNNTTGG	2 cut(s)	84, 116
AloI	GAACNNNNNNTCC	3 cut(s)	769, 801, 836
AluBI	AGCT	4 cut(s)	8, 196, 575, 719
AluI	AGCT	4 cut(s)	8, 196, 575, 719
Alw26I	GTCTC	1 cut(s)	492
AlwI	GGATC	2 cut(s)	406, 442
AoxI	GGCC	3 cut(s)	413, 452, 533
ApeKI	GCWGC	1 cut(s)	719
ApoI	RAATTY	1 cut(s)	213
Asp718I	GGTACC	1 cut(s)	379
AspS9I	GGNCC	1 cut(s)	452
AsuC2I	CCSGG	2 cut(s)	582, 789
AsuHPI	GGTGA	2 cut(s)	601, 853
BanI	GGYRCC	2 cut(s)	379, 457
BbvI	GCAGC	1 cut(s)	706
BccI	CCATC	7 cut(s)	50, 211, 233, 283, 322, 328, 544
BcgI	CGANNNNNNTGC	2 cut(s)	50, 84
BciT130I	CCWGG	2 cut(s)	390, 839
BciVI	GTATCC	1 cut(s)	763
BcnI	CCSGG	2 cut(s)	582, 789
BcoDI	GTCTC	1 cut(s)	492
BfaI	CTAG	2 cut(s)	570, 680
BfuI	GTATCC	1 cut(s)	763
BisI	GCNGC	1 cut(s)	720
BlsI	GCNGC	1 cut(s)	721
Bme1390I	CCNGG	4 cut(s)	390, 582, 789, 839
BmgT120I	GGNCC	1 cut(s)	452
BmiI	GGNNCC	2 cut(s)	381, 459
BmrFI	CCNGG	4 cut(s)	390, 582, 789, 839
BmrI	ACTGGG	1 cut(s)	94
BmsI	GCATC	1 cut(s)	331
BmuI	ACTGGG	1 cut(s)	94
BpmI	CTGGAG	4 cut(s)	372, 492, 612, 744
BpuMI	CCSGG	2 cut(s)	582, 789
BsaWI	WCCGGW	1 cut(s)	490
Bsc4I	CCNNNNNNNGG	3 cut(s)	209, 389, 395
Bse118I	RCCGGY	1 cut(s)	454
Bse1I	ACTGG	5 cut(s)	89, 99, 509, 595, 697
BseBI	CCWGG	2 cut(s)	390, 839
BseGI	GGATG	4 cut(s)	94, 309, 320, 536
BseLI	CCNNNNNNNGG	3 cut(s)	209, 389, 395
BseNI	ACTGG	5 cut(s)	89, 99, 509, 595, 697
BseRI	GAGGAG	1 cut(s)	722
BseXI	GCAGC	1 cut(s)	706
BsgI	GTGCAG	1 cut(s)	315
BshFI	GGCC	3 cut(s)	415, 454, 535
BshNI	GGYRCC	2 cut(s)	379, 457
BsiSI	CCGG	4 cut(s)	455, 491, 582, 789
BslI	CCNNNNNNNGG	3 cut(s)	209, 389, 395
BsmAI	GTCTC	1 cut(s)	492
BsmBI	CGTCTC	1 cut(s)	492
BsnI	GGCC	3 cut(s)	415, 454, 535
Bsp143I	GATC	2 cut(s)	398, 434
BspANI	GGCC	3 cut(s)	415, 454, 535
BspLI	GGNNCC	2 cut(s)	381, 459
BspPI	GGATC	2 cut(s)	406, 442
BspT107I	GGYRCC	2 cut(s)	379, 457
BsrFI	RCCGGY	1 cut(s)	454
BsrI	ACTGG	5 cut(s)	89, 99, 509, 595, 697
BssAI	RCCGGY	1 cut(s)	454
BssMI	GATC	2 cut(s)	398, 434
BssNAI	GTATAC	1 cut(s)	129
Bst1107I	GTATAC	1 cut(s)	129
Bst2UI	CCWGG	2 cut(s)	390, 839
Bst4CI	ACNGT	2 cut(s)	50, 358
BstC8I	GCNNGC	3 cut(s)	311, 456, 645
BstDEI	CTNAG	1 cut(s)	278
BstEII	GGTNACC	1 cut(s)	833
BstF5I	GGATG	4 cut(s)	94, 309, 320, 536
BstKTI	GATC	2 cut(s)	401, 437
BstMAI	GTCTC	1 cut(s)	492
BstMBI	GATC	2 cut(s)	398, 434
BstNI	CCWGG	2 cut(s)	390, 839
BstNSI	RCATGY	1 cut(s)	313
BstPI	GGTNACC	1 cut(s)	833
BstSCI	CCNGG	4 cut(s)	388, 580, 787, 837
BstV1I	GCAGC	1 cut(s)	706
BstX2I	RGATCY	1 cut(s)	434
BstYI	RGATCY	1 cut(s)	434
BstZ17I	GTATAC	1 cut(s)	129
BsuI	GTATCC	1 cut(s)	763
BsuRI	GGCC	3 cut(s)	415, 454, 535
BtsCI	GGATG	4 cut(s)	94, 309, 320, 536
BtsIMutI	CAGTG	1 cut(s)	55
Cac8I	GCNNGC	3 cut(s)	311, 456, 645
Cfr10I	RCCGGY	1 cut(s)	454
Cfr13I	GGNCC	1 cut(s)	452
CseI	GACGC	1 cut(s)	474
CsiI	ACCWGGT	1 cut(s)	837
Csp6I	GTAC	3 cut(s)	380, 466, 770
CviAII	CATG	4 cut(s)	133, 310, 424, 773
CviJI	RGCY	8 cut(s)	8, 196, 415, 454, 535, 575, 653, 719
CviKI_1	RGCY	8 cut(s)	8, 196, 415, 454, 535, 575, 653, 719
CviQI	GTAC	3 cut(s)	380, 466, 770
DdeI	CTNAG	1 cut(s)	278
DpnI	GATC	2 cut(s)	400, 436
DpnII	GATC	2 cut(s)	398, 434
Eco147I	AGGCCT	1 cut(s)	415
Eco91I	GGTNACC	1 cut(s)	833
EcoO65I	GGTNACC	1 cut(s)	833
EcoRII	CCWGG	2 cut(s)	388, 837
Esp3I	CGTCTC	1 cut(s)	492
FaeI	CATG	4 cut(s)	136, 313, 427, 776
FatI	CATG	4 cut(s)	132, 309, 423, 772
FblI	GTMKAC	1 cut(s)	128
Fnu4HI	GCNGC	1 cut(s)	720
FokI	GGATG	4 cut(s)	101, 307, 316, 523
Fsp4HI	GCNGC	1 cut(s)	720
FspBI	CTAG	2 cut(s)	570, 680
GluI	GCNGC	1 cut(s)	720
GsuI	CTGGAG	4 cut(s)	372, 492, 612, 744
HaeIII	GGCC	3 cut(s)	415, 454, 535
HapII	CCGG	4 cut(s)	455, 491, 582, 789
HgaI	GACGC	1 cut(s)	474
Hin1II	CATG	4 cut(s)	136, 313, 427, 776
HincII	GTYRAC	1 cut(s)	82
HindII	GTYRAC	1 cut(s)	82
HindIII	AAGCTT	1 cut(s)	6
HinfI	GANTC	4 cut(s)	35, 119, 660, 683
HpaII	CCGG	4 cut(s)	455, 491, 582, 789
HphI	GGTGA	2 cut(s)	601, 853
Hpy166II	GTNNAC	4 cut(s)	82, 129, 468, 844
Hpy188I	TCNGA	4 cut(s)	34, 145, 260, 667
Hpy188III	TCNNGA	1 cut(s)	475
Hpy8I	GTNNAC	4 cut(s)	82, 129, 468, 844
HpyAV	CCTTC	3 cut(s)	525, 733, 833
HpyCH4III	ACNGT	2 cut(s)	50, 358
HpyCH4IV	ACGT	1 cut(s)	408
HpyCH4V	TGCA	2 cut(s)	296, 309
HpyF3I	CTNAG	1 cut(s)	278
HpySE526I	ACGT	1 cut(s)	408
Hsp92II	CATG	4 cut(s)	136, 313, 427, 776
KpnI	GGTACC	1 cut(s)	383
KroI	GCCGGC	1 cut(s)	454
KroNI	GCCGGC	1 cut(s)	456
Kzo9I	GATC	2 cut(s)	398, 434
LmnI	GCTCC	1 cut(s)	146
Lsp1109I	GCAGC	1 cut(s)	706
LweI	GCATC	1 cut(s)	331
MabI	ACCWGGT	1 cut(s)	837
MaeI	CTAG	2 cut(s)	570, 680
MaeII	ACGT	1 cut(s)	408
MaeIII	GTNAC	3 cut(s)	688, 793, 833
MalI	GATC	2 cut(s)	400, 436
MboI	GATC	2 cut(s)	398, 434
MboII	GAAGA	6 cut(s)	3, 248, 278, 298, 495, 776
MflI	RGATCY	1 cut(s)	434
MluCI	AATT	6 cut(s)	213, 220, 332, 499, 517, 613
MmeI	TCCRAC	2 cut(s)	137, 283
MnlI	CCTC	6 cut(s)	294, 371, 396, 550, 587, 700
MroNI	GCCGGC	1 cut(s)	454
MseI	TTAA	2 cut(s)	20, 444
MslI	CAYNNNNRTG	1 cut(s)	51
MspA1I	CMGCKG	1 cut(s)	719
MspI	CCGG	4 cut(s)	455, 491, 582, 789
MspR9I	CCNGG	4 cut(s)	390, 582, 789, 839
MvaI	CCWGG	2 cut(s)	390, 839
NaeI	GCCGGC	1 cut(s)	456
NciI	CCSGG	2 cut(s)	582, 789
NdeII	GATC	2 cut(s)	398, 434
NgoMIV	GCCGGC	1 cut(s)	454
NlaIII	CATG	4 cut(s)	136, 313, 427, 776
NlaIV	GGNNCC	2 cut(s)	381, 459
NspI	RCATGY	1 cut(s)	313
PaeI	GCATGC	1 cut(s)	313
PceI	AGGCCT	1 cut(s)	415
PdiI	GCCGGC	1 cut(s)	456
PfeI	GAWTC	4 cut(s)	35, 119, 660, 683
PflMI	CCANNNNNTGG	1 cut(s)	209
PfoI	TCCNGGA	2 cut(s)	388, 787
PkrI	GCNGC	1 cut(s)	721
Psp6I	CCWGG	2 cut(s)	388, 837
PspEI	GGTNACC	1 cut(s)	833
PspGI	CCWGG	2 cut(s)	388, 837
PspN4I	GGNNCC	2 cut(s)	381, 459
PspPI	GGNCC	1 cut(s)	452
PsuI	RGATCY	1 cut(s)	434
PvuII	CAGCTG	1 cut(s)	719
RsaI	GTAC	3 cut(s)	381, 467, 771
RsaNI	GTAC	3 cut(s)	380, 466, 770
RseI	CAYNNNNRTG	1 cut(s)	51
SaqAI	TTAA	2 cut(s)	20, 444
SatI	GCNGC	1 cut(s)	720
Sau3AI	GATC	2 cut(s)	398, 434
Sau96I	GGNCC	1 cut(s)	452
ScrFI	CCNGG	4 cut(s)	390, 582, 789, 839
SexAI	ACCWGGT	1 cut(s)	837
SfaNI	GCATC	1 cut(s)	331
SmiMI	CAYNNNNRTG	1 cut(s)	51
SphI	GCATGC	1 cut(s)	313
Sse9I	AATT	6 cut(s)	213, 220, 332, 499, 517, 613
SseBI	AGGCCT	1 cut(s)	415
SspI	AATATT	1 cut(s)	190
SspMI	CTAG	2 cut(s)	570, 680
StuI	AGGCCT	1 cut(s)	415
StyD4I	CCNGG	4 cut(s)	388, 580, 787, 837
TaaI	ACNGT	2 cut(s)	50, 358
TaiI	ACGT	1 cut(s)	411
TaqI	TCGA	1 cut(s)	122
TasI	AATT	6 cut(s)	213, 220, 332, 499, 517, 613
TatI	WGTACW	2 cut(s)	465, 769
TfiI	GAWTC	4 cut(s)	35, 119, 660, 683
Tru1I	TTAA	2 cut(s)	20, 444
Tru9I	TTAA	2 cut(s)	20, 444
TscAI	CASTG	1 cut(s)	55
TseI	GCWGC	1 cut(s)	719
TspDTI	ATGAA	6 cut(s)	105, 149, 162, 299, 721, 815
TspGWI	ACGGA	1 cut(s)	313
TspRI	CASTG	1 cut(s)	55
Van91I	CCANNNNNTGG	1 cut(s)	209
XapI	RAATTY	1 cut(s)	213
XceI	RCATGY	1 cut(s)	313
XcmI	CCANNNNNNNNNTGG	1 cut(s)	53
XmiI	GTMKAC	1 cut(s)	128
XspI	CTAG	2 cut(s)	570, 680

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.