RchiOBHm_Chr6g0247221

Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0002089
Physical Location & Seq
Reverse (-)
3044238 .. 3046058
1821 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ22161

Sequence Viewer

Length: 819 bp
ATGCTATTCCAACCAGAAGAAAATGCTCTAAGAATGAAGATGGGTGCAGAGAGGATGTGCATGCCATCTCCATCCGTTGAGCAATTTGTTGATGCTGTGAAGCAAACTGTCCTCGCCAATAAGCGTTGGGTACCACCTCCAGGAAAAGGATCACTATACGTCAGGCCTTTGCTCATGGGAAGTGGATCTGTTCTTAATGTTGGGCCGGCACCAGAGTACACACTCCTGATATATGCTTCTCCGGTTGGTAATTCTTCTCCAGTTGGTAATTACCACAAGGGAAGGGCATCCCTGAACTTGTATGTTGAGGATAAACTCCGTAGAGCTACTCCCGGTGGAACTGGAGGGATAAAGTCTATCACCAATTACGCACCCGTTTACCAGGCACAAAAGCAAGCAAGAGCCAAAGGATTCTCTGATGTTTTATACCTAGATTCTGTAACTGGTAAAAACATTGAGGAGATTTCAGCTGCTAACATTTTCATTGCGAAGGATAATGTTATTTCCACTCCAGCATTAGTGCATGGAACTATTCTTCCGGGAGTTACTCGTAAAAGCATAATGGAGATTGCCCTTGATTTAGGTTACCAGATGGAGGAGCGTCTAATTCCACTGGAGGAGTTGCTTGAAGCTGATGAAGCTTTCTGCACTGGAACTGCTGTAACTGTCAACCCTATTGGTGCAGTAACACATGACACTAAAAGGGTGGAGTACAAAACAGGGGAGGGAACACTATCTCAGAAACTGTATGAAACACTAACAGGAATCCAAACTGGTCGTCTCGAGGACAAGAAGGGATGGACCCTGGAGGTCAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00270 ko00280 ko00290 ko00770 ko01100 ko01110 ko01130 ko01210 ko01230 map00270 map00280 map00290 map00770 map01100 map01110 map01130 map01210 map01230
Pfam Domains
Protein Families
Aminotran_4

Protein Analysis

272

Amino Acids

29.59

Weight (kDa)

6.85

Isoelectric Point (pI)

47.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aminotran_4 PF01063 3 - 227 7.4e-30 Amino-transferase class IV
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 130
AccB1I GGYRCC 2 cut(s) 130, 208
AclWI GGATC 2 cut(s) 157, 193
AfaI GTAC 3 cut(s) 132, 218, 713
AfiI CCNNNNNNNGG 3 cut(s) 140, 146, 595
AgsI TTSAA 1 cut(s) 629
AjnI CCWGG 3 cut(s) 139, 381, 804
AloI GAACNNNNNNTCC 2 cut(s) 520, 552
AluBI AGCT 4 cut(s) 326, 470, 632, 641
AluI AGCT 4 cut(s) 326, 470, 632, 641
Alw26I GTCTC 1 cut(s) 785
AlwI GGATC 2 cut(s) 157, 193
AlwNI CAGNNNCTG 1 cut(s) 745
Ama87I CYCGRG 1 cut(s) 782
AoxI GGCC 2 cut(s) 164, 203
ApeKI GCWGC 1 cut(s) 470
ArsI GACNNNNNNTTYG 2 cut(s) 763, 795
Asp718I GGTACC 1 cut(s) 130
AspS9I GGNCC 2 cut(s) 203, 801
AsuC2I CCSGG 2 cut(s) 333, 540
AsuHPI GGTGA 1 cut(s) 352
AvaI CYCGRG 1 cut(s) 782
AvaII GGWCC 1 cut(s) 801
BanI GGYRCC 2 cut(s) 130, 208
BbvI GCAGC 1 cut(s) 457
BccI CCATC 5 cut(s) 34, 73, 79, 586, 792
BciT130I CCWGG 3 cut(s) 141, 383, 806
BcnI CCSGG 2 cut(s) 333, 540
BcoDI GTCTC 1 cut(s) 785
BfaI CTAG 1 cut(s) 431
BisI GCNGC 1 cut(s) 471
BlsI GCNGC 1 cut(s) 472
Bme1390I CCNGG 5 cut(s) 141, 333, 383, 540, 806
Bme18I GGWCC 1 cut(s) 801
BmeT110I CYCGRG 1 cut(s) 782
BmgT120I GGNCC 2 cut(s) 203, 801
BmiI GGNNCC 3 cut(s) 132, 210, 803
BmrFI CCNGG 5 cut(s) 141, 333, 383, 540, 806
BmsI GCATC 2 cut(s) 82, 296
BpmI CTGGAG 5 cut(s) 123, 243, 363, 495, 635
BpuMI CCSGG 2 cut(s) 333, 540
BsaJI CCNNGG 1 cut(s) 804
BsaWI WCCGGW 1 cut(s) 241
Bsc4I CCNNNNNNNGG 3 cut(s) 140, 146, 595
Bse118I RCCGGY 1 cut(s) 205
Bse1I ACTGG 6 cut(s) 260, 346, 448, 618, 655, 778
Bse3DI GCAATG 1 cut(s) 483
BseBI CCWGG 3 cut(s) 141, 383, 806
BseDI CCNNGG 1 cut(s) 804
BseGI GGATG 4 cut(s) 60, 71, 287, 803
BseLI CCNNNNNNNGG 3 cut(s) 140, 146, 595
BseMI GCAATG 1 cut(s) 483
BseMII CTCAG 1 cut(s) 752
BseNI ACTGG 6 cut(s) 260, 346, 448, 618, 655, 778
BseRI GAGGAG 3 cut(s) 473, 611, 632
BseXI GCAGC 1 cut(s) 457
BsgI GTGCAG 3 cut(s) 66, 631, 702
BshFI GGCC 2 cut(s) 166, 205
BshNI GGYRCC 2 cut(s) 130, 208
BsiHKCI CYCGRG 1 cut(s) 782
BsiSI CCGG 4 cut(s) 206, 242, 333, 539
BslI CCNNNNNNNGG 3 cut(s) 140, 146, 595
BsmAI GTCTC 1 cut(s) 785
BsmBI CGTCTC 1 cut(s) 785
BsnI GGCC 2 cut(s) 166, 205
BsoBI CYCGRG 1 cut(s) 782
Bsp143I GATC 2 cut(s) 149, 185
BspANI GGCC 2 cut(s) 166, 205
BspCNI CTCAG 1 cut(s) 751
BspLI GGNNCC 3 cut(s) 132, 210, 803
BspPI GGATC 2 cut(s) 157, 193
BspT107I GGYRCC 2 cut(s) 130, 208
BsrDI GCAATG 1 cut(s) 483
BsrFI RCCGGY 1 cut(s) 205
BsrI ACTGG 6 cut(s) 260, 346, 448, 618, 655, 778
BssAI RCCGGY 1 cut(s) 205
BssECI CCNNGG 1 cut(s) 804
BssMI GATC 2 cut(s) 149, 185
Bst2UI CCWGG 3 cut(s) 141, 383, 806
Bst4CI ACNGT 3 cut(s) 109, 667, 747
BstC8I GCNNGC 3 cut(s) 62, 207, 396
BstDEI CTNAG 2 cut(s) 29, 738
BstEII GGTNACC 1 cut(s) 584
BstF5I GGATG 4 cut(s) 60, 71, 287, 803
BstKTI GATC 2 cut(s) 152, 188
BstMAI GTCTC 1 cut(s) 785
BstMBI GATC 2 cut(s) 149, 185
BstMWI GCNNNNNNNGC 1 cut(s) 638
BstNI CCWGG 3 cut(s) 141, 383, 806
BstNSI RCATGY 1 cut(s) 64
BstPI GGTNACC 1 cut(s) 584
BstSCI CCNGG 5 cut(s) 139, 331, 381, 538, 804
BstV1I GCAGC 1 cut(s) 457
BstX2I RGATCY 1 cut(s) 185
BstYI RGATCY 1 cut(s) 185
BsuRI GGCC 2 cut(s) 166, 205
BtsCI GGATG 4 cut(s) 60, 71, 287, 803
BtsIMutI CAGTG 2 cut(s) 611, 648
Cac8I GCNNGC 3 cut(s) 62, 207, 396
CaiI CAGNNNCTG 1 cut(s) 745
Cfr10I RCCGGY 1 cut(s) 205
Cfr13I GGNCC 2 cut(s) 203, 801
CseI GACGC 1 cut(s) 590
Csp6I GTAC 3 cut(s) 131, 217, 712
CviAII CATG 4 cut(s) 61, 175, 524, 692
CviJI RGCY 7 cut(s) 166, 205, 326, 404, 470, 632, 641
CviKI_1 RGCY 7 cut(s) 166, 205, 326, 404, 470, 632, 641
CviQI GTAC 3 cut(s) 131, 217, 712
DdeI CTNAG 2 cut(s) 29, 738
DpnI GATC 2 cut(s) 151, 187
DpnII GATC 2 cut(s) 149, 185
Eco147I AGGCCT 1 cut(s) 166
Eco47I GGWCC 1 cut(s) 801
Eco88I CYCGRG 1 cut(s) 782
Eco91I GGTNACC 1 cut(s) 584
EcoO65I GGTNACC 1 cut(s) 584
EcoRII CCWGG 3 cut(s) 139, 381, 804
Esp3I CGTCTC 1 cut(s) 785
FaeI CATG 4 cut(s) 64, 178, 527, 695
FatI CATG 4 cut(s) 60, 174, 523, 691
Fnu4HI GCNGC 1 cut(s) 471
FokI GGATG 4 cut(s) 58, 67, 274, 810
Fsp4HI GCNGC 1 cut(s) 471
FspBI CTAG 1 cut(s) 431
GluI GCNGC 1 cut(s) 471
GsuI CTGGAG 5 cut(s) 123, 243, 363, 495, 635
HaeIII GGCC 2 cut(s) 166, 205
HapII CCGG 4 cut(s) 206, 242, 333, 539
HgaI GACGC 1 cut(s) 590
Hin1II CATG 4 cut(s) 64, 178, 527, 695
HincII GTYRAC 2 cut(s) 670, 814
HindII GTYRAC 2 cut(s) 670, 814
HindIII AAGCTT 1 cut(s) 639
HinfI GANTC 3 cut(s) 411, 434, 765
HpaII CCGG 4 cut(s) 206, 242, 333, 539
HphI GGTGA 1 cut(s) 352
Hpy166II GTNNAC 4 cut(s) 219, 379, 670, 814
Hpy188I TCNGA 2 cut(s) 418, 741
Hpy188III TCNNGA 2 cut(s) 226, 782
Hpy8I GTNNAC 4 cut(s) 219, 379, 670, 814
HpyAV CCTTC 3 cut(s) 276, 484, 787
HpyCH4III ACNGT 3 cut(s) 109, 667, 747
HpyCH4IV ACGT 1 cut(s) 159
HpyCH4V TGCA 5 cut(s) 47, 60, 523, 648, 683
HpyF10VI GCNNNNNNNGC 1 cut(s) 638
HpyF3I CTNAG 2 cut(s) 29, 738
HpySE526I ACGT 1 cut(s) 159
Hsp92II CATG 4 cut(s) 64, 178, 527, 695
KpnI GGTACC 1 cut(s) 134
KroI GCCGGC 1 cut(s) 205
KroNI GCCGGC 1 cut(s) 207
Kzo9I GATC 2 cut(s) 149, 185
LmnI GCTCC 1 cut(s) 598
Lsp1109I GCAGC 1 cut(s) 457
LweI GCATC 2 cut(s) 82, 296
MaeI CTAG 1 cut(s) 431
MaeII ACGT 1 cut(s) 159
MaeIII GTNAC 5 cut(s) 439, 544, 584, 661, 685
MalI GATC 2 cut(s) 151, 187
MboI GATC 2 cut(s) 149, 185
MboII GAAGA 4 cut(s) 29, 49, 246, 527
MflI RGATCY 1 cut(s) 185
MluCI AATT 5 cut(s) 83, 250, 268, 364, 606
MmeI TCCRAC 1 cut(s) 34
MroNI GCCGGC 1 cut(s) 205
MseI TTAA 1 cut(s) 195
MspA1I CMGCKG 1 cut(s) 470
MspI CCGG 4 cut(s) 206, 242, 333, 539
MspR9I CCNGG 5 cut(s) 141, 333, 383, 540, 806
MvaI CCWGG 3 cut(s) 141, 383, 806
MwoI GCNNNNNNNGC 1 cut(s) 638
NaeI GCCGGC 1 cut(s) 207
NciI CCSGG 2 cut(s) 333, 540
NdeII GATC 2 cut(s) 149, 185
NgoMIV GCCGGC 1 cut(s) 205
NlaIII CATG 4 cut(s) 64, 178, 527, 695
NlaIV GGNNCC 3 cut(s) 132, 210, 803
NspI RCATGY 1 cut(s) 64
PaeI GCATGC 1 cut(s) 64
PaeR7I CTCGAG 1 cut(s) 782
PceI AGGCCT 1 cut(s) 166
PdiI GCCGGC 1 cut(s) 207
PfeI GAWTC 3 cut(s) 411, 434, 765
PfoI TCCNGGA 2 cut(s) 139, 538
PkrI GCNGC 1 cut(s) 472
Psp6I CCWGG 3 cut(s) 139, 381, 804
PspEI GGTNACC 1 cut(s) 584
PspGI CCWGG 3 cut(s) 139, 381, 804
PspN4I GGNNCC 3 cut(s) 132, 210, 803
PspPI GGNCC 2 cut(s) 203, 801
PstNI CAGNNNCTG 1 cut(s) 745
PsuI RGATCY 1 cut(s) 185
PvuII CAGCTG 1 cut(s) 470
RsaI GTAC 3 cut(s) 132, 218, 713
RsaNI GTAC 3 cut(s) 131, 217, 712
SaqAI TTAA 1 cut(s) 195
SatI GCNGC 1 cut(s) 471
Sau3AI GATC 2 cut(s) 149, 185
Sau96I GGNCC 2 cut(s) 203, 801
ScrFI CCNGG 5 cut(s) 141, 333, 383, 540, 806
SetI ASST 9 cut(s) 139, 162, 328, 432, 472, 586, 634, 643, 813
SfaNI GCATC 2 cut(s) 82, 296
Sfr274I CTCGAG 1 cut(s) 782
SinI GGWCC 1 cut(s) 801
SlaI CTCGAG 1 cut(s) 782
SmlI CTYRAG 1 cut(s) 782
SmoI CTYRAG 1 cut(s) 782
SphI GCATGC 1 cut(s) 64
Sse9I AATT 5 cut(s) 83, 250, 268, 364, 606
SseBI AGGCCT 1 cut(s) 166
SspMI CTAG 1 cut(s) 431
StuI AGGCCT 1 cut(s) 166
StyD4I CCNGG 5 cut(s) 139, 331, 381, 538, 804
TaaI ACNGT 3 cut(s) 109, 667, 747
TaiI ACGT 1 cut(s) 162
TaqI TCGA 1 cut(s) 783
TasI AATT 5 cut(s) 83, 250, 268, 364, 606
TatI WGTACW 2 cut(s) 216, 711
TfiI GAWTC 3 cut(s) 411, 434, 765
Tru1I TTAA 1 cut(s) 195
Tru9I TTAA 1 cut(s) 195
TscAI CASTG 2 cut(s) 618, 655
TseI GCWGC 1 cut(s) 470
TspDTI ATGAA 4 cut(s) 50, 472, 651, 765
TspGWI ACGGA 2 cut(s) 64, 308
TspRI CASTG 2 cut(s) 618, 655
VpaK11BI GGWCC 1 cut(s) 801
XceI RCATGY 1 cut(s) 64
XhoI CTCGAG 1 cut(s) 782
XspI CTAG 1 cut(s) 431
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.