Rorug05G0525200

Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0002089
Physical Location & Seq
Forward (+)
71265155 .. 71266250
1096 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0525200.1

Sequence Viewer

Length: 969 bp
ATGTCGATTCTATTACCTCCCACCATTGCGATCAAAACAGGCTGGGGTACTGCCAACGTCTACATGAACTACAACGATGATTCTGATTCTCAGACTAGGGGCTTCCTCAAATTCAATGGAGGGAATGTTTTCAGCCCCCTAGCAAAGTTCGAAGTGGTGGCCGCAAATACTGGAATAGGAATGGTGCATATAAGATGCTCTCACAATAAGAAGTTCTTGCGAGTGAGGGCCCAGGGCAGTGGGTACATTTCTCCAGACGCTGATGAACCAGAAGAAGACCAATCAAAATGGTCATGTACGTTATTCCAGCCCAGACCTGTAGATGGCAATCCAGACAGCGTTCGGTTGTTCCATGTCCAACTACAGAAATATCCGGTGTTCAGTAACTCTTATTACTTTTGGGTGGGCTATAATAATCCAGCCCAGCAGGATATCCTGGAAATCATTGACCTTGAATCGTTAGTGATACTGCCGAGGCATGTGGCCTTCAAAGGCCATAATGGAAAATATCTCGGAACAGTAGAGCTGAACAACCAACGGTATCTGGCATTCGATTACGCTGCCAAGGGTCGCCCTGAAACCTGGTTCGAGGTATCCACCGATGGTCATGGAAGGGCACAGATCATGTCAAACCACACAAAGACATTTTGGAGGAACGCGGGTGCTACTAATTGGATTTGGTCTGATGTAGAAAGCGCCAACGACCTCACAACCCACAGCAACTTTTGGCCTGTGAAGGTCAACAATAATACCATCGCTCTCAACAGCTCCACCAACAACAATTTTTGCTCATTGATCGCCCTTAATAGCACAACAGACTGTCTCAACGCTGCCTACTCTAGCATTGCCCCCGAGTCACACCTGGTGATGGAAGAACTCGTGCTCTCCAGAAGCATCTACAATGCCGATTTCGACCTCGCCAATGCCATAATCTATGGCGAGACCCCGGTGACGATGGCCACTGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00270 ko00280 ko00290 ko00770 ko01100 ko01110 ko01130 ko01210 ko01230 map00270 map00280 map00290 map00770 map01100 map01110 map01130 map01210 map01230
Pfam Domains
Protein Families
Aminotran_4

Protein Analysis

322

Amino Acids

36.02

Weight (kDa)

5.7

Isoelectric Point (pI)

39.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Agglutinin PF07468 17 - 124 6e-17 Agglutinin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 60
AccII CGCG 1 cut(s) 659
AciI CCGC 2 cut(s) 162, 659
AcoI YGGCCR 2 cut(s) 159, 957
AcsI RAATTY 1 cut(s) 110
AdeI CACNNNGTG 1 cut(s) 865
AfaI GTAC 3 cut(s) 49, 245, 298
AfiI CCNNNNNNNGG 2 cut(s) 323, 868
AgsI TTSAA 3 cut(s) 115, 455, 490
AjnI CCWGG 4 cut(s) 231, 435, 581, 861
AluBI AGCT 2 cut(s) 526, 768
AluI AGCT 2 cut(s) 526, 768
Alw21I GWGCWC 1 cut(s) 885
Alw26I GTCTC 2 cut(s) 827, 935
AlwNI CAGNNNCTG 1 cut(s) 260
Ama87I CYCGRG 1 cut(s) 851
AoxI GGCC 6 cut(s) 159, 228, 483, 493, 728, 957
ApaI GGGCCC 1 cut(s) 232
ApeKI GCWGC 2 cut(s) 560, 830
ApoI RAATTY 1 cut(s) 110
Asp700I GAANNNNTTC 1 cut(s) 128
AspLEI GCGC 1 cut(s) 698
AspS9I GGNCC 2 cut(s) 228, 229
AsuC2I CCSGG 1 cut(s) 947
AsuHPI GGTGA 2 cut(s) 877, 961
AsuII TTCGAA 1 cut(s) 150
AvaI CYCGRG 1 cut(s) 851
BaeGI GKGCMC 2 cut(s) 232, 619
BalI TGGCCA 1 cut(s) 959
BanII GRGCYC 1 cut(s) 232
BauI CACGAG 1 cut(s) 878
BbsI GAAGAC 1 cut(s) 282
Bbv12I GWGCWC 1 cut(s) 885
BbvI GCAGC 2 cut(s) 547, 817
BccI CCATC 5 cut(s) 317, 596, 761, 862, 949
BcgI CGANNNNNNTGC 2 cut(s) 542, 576
BciT130I CCWGG 4 cut(s) 233, 437, 583, 863
BciVI GTATCC 1 cut(s) 604
BcnI CCSGG 1 cut(s) 947
BcoDI GTCTC 2 cut(s) 827, 935
BfaI CTAG 3 cut(s) 96, 140, 840
BfmI CTRYAG 2 cut(s) 318, 362
BfoI RGCGCY 1 cut(s) 699
BfuI GTATCC 1 cut(s) 604
BisI GCNGC 3 cut(s) 162, 561, 831
BlsI GCNGC 3 cut(s) 163, 562, 832
Bme1390I CCNGG 5 cut(s) 233, 437, 583, 863, 947
BmeT110I CYCGRG 1 cut(s) 851
BmgT120I GGNCC 2 cut(s) 228, 229
BmiI GGNNCC 1 cut(s) 230
BmrFI CCNGG 5 cut(s) 233, 437, 583, 863, 947
BmsI GCATC 2 cut(s) 185, 903
BpiI GAAGAC 1 cut(s) 282
BpmI CTGGAG 2 cut(s) 237, 871
Bpu14I TTCGAA 1 cut(s) 150
BpuMI CCSGG 1 cut(s) 947
BsaBI GATNNNNATC 1 cut(s) 327
BsaI GGTCTC 1 cut(s) 935
BsaJI CCNNGG 5 cut(s) 231, 232, 473, 564, 945
BsaWI WCCGGW 1 cut(s) 373
BsaXI ACNNNNNCTCC 2 cut(s) 111, 141
Bsc4I CCNNNNNNNGG 2 cut(s) 323, 868
Bse1I ACTGG 1 cut(s) 175
Bse3DI GCAATG 2 cut(s) 24, 843
Bse8I GATNNNNATC 1 cut(s) 327
BseBI CCWGG 4 cut(s) 233, 437, 583, 863
BseDI CCNNGG 5 cut(s) 231, 232, 473, 564, 945
BseJI GATNNNNATC 1 cut(s) 327
BseLI CCNNNNNNNGG 2 cut(s) 323, 868
BseMI GCAATG 2 cut(s) 24, 843
BseMII CTCAG 1 cut(s) 104
BseNI ACTGG 1 cut(s) 175
BseSI GKGCMC 2 cut(s) 232, 619
BseXI GCAGC 2 cut(s) 547, 817
BseYI CCCAGC 2 cut(s) 42, 423
Bsh1236I CGCG 1 cut(s) 659
BshFI GGCC 6 cut(s) 161, 230, 485, 495, 730, 959
BsiHKAI GWGCWC 1 cut(s) 885
BsiHKCI CYCGRG 1 cut(s) 851
BsiSI CCGG 2 cut(s) 374, 947
BslI CCNNNNNNNGG 2 cut(s) 323, 868
BsmAI GTCTC 2 cut(s) 827, 935
BsmI GAATGC 1 cut(s) 548
BsnI GGCC 6 cut(s) 161, 230, 485, 495, 730, 959
Bso31I GGTCTC 1 cut(s) 935
BsoBI CYCGRG 1 cut(s) 851
Bsp119I TTCGAA 1 cut(s) 150
Bsp120I GGGCCC 1 cut(s) 228
Bsp1286I GDGCHC 3 cut(s) 232, 619, 885
Bsp143I GATC 3 cut(s) 30, 621, 795
BspACI CCGC 2 cut(s) 162, 659
BspANI GGCC 6 cut(s) 161, 230, 485, 495, 730, 959
BspCNI CTCAG 1 cut(s) 103
BspFNI CGCG 1 cut(s) 659
BspLI GGNNCC 1 cut(s) 230
BspT104I TTCGAA 1 cut(s) 150
BspTNI GGTCTC 1 cut(s) 935
BsrDI GCAATG 2 cut(s) 24, 843
BsrI ACTGG 1 cut(s) 175
BssECI CCNNGG 5 cut(s) 231, 232, 473, 564, 945
BssMI GATC 3 cut(s) 30, 621, 795
BssSI CACGAG 1 cut(s) 878
BssT1I CCWWGG 1 cut(s) 564
Bst2BI CACGAG 1 cut(s) 878
Bst2UI CCWGG 4 cut(s) 233, 437, 583, 863
Bst4CI ACNGT 4 cut(s) 520, 540, 821, 964
BstBI TTCGAA 1 cut(s) 150
BstDEI CTNAG 1 cut(s) 90
BstFNI CGCG 1 cut(s) 659
BstH2I RGCGCY 1 cut(s) 699
BstHHI GCGC 1 cut(s) 698
BstKTI GATC 3 cut(s) 33, 624, 798
BstMAI GTCTC 2 cut(s) 827, 935
BstMBI GATC 3 cut(s) 30, 621, 795
BstNI CCWGG 4 cut(s) 233, 437, 583, 863
BstNSI RCATGY 1 cut(s) 482
BstSCI CCNGG 5 cut(s) 231, 435, 581, 861, 945
BstSFI CTRYAG 2 cut(s) 318, 362
BstSLI GKGCMC 2 cut(s) 232, 619
BstUI CGCG 1 cut(s) 659
BstV1I GCAGC 2 cut(s) 547, 817
BstV2I GAAGAC 1 cut(s) 282
BstXI CCANNNNNNTGG 1 cut(s) 239
BsuI GTATCC 1 cut(s) 604
BsuRI GGCC 6 cut(s) 161, 230, 485, 495, 730, 959
BtgZI GCGATG 1 cut(s) 739
BtsI GCAGTG 1 cut(s) 244
BtsIMutI CAGTG 2 cut(s) 244, 960
CaiI CAGNNNCTG 1 cut(s) 260
CfoI GCGC 1 cut(s) 698
Cfr13I GGNCC 2 cut(s) 228, 229
CseI GACGC 1 cut(s) 266
CsiI ACCWGGT 2 cut(s) 581, 861
Csp6I GTAC 3 cut(s) 48, 244, 297
CviAII CATG 6 cut(s) 64, 294, 353, 479, 608, 625
CviQI GTAC 3 cut(s) 48, 244, 297
DdeI CTNAG 1 cut(s) 90
DpnI GATC 3 cut(s) 32, 623, 797
DpnII GATC 3 cut(s) 30, 621, 795
DraIII CACNNNGTG 1 cut(s) 865
EaeI YGGCCR 2 cut(s) 159, 957
Eco130I CCWWGG 1 cut(s) 564
Eco24I GRGCYC 1 cut(s) 232
Eco31I GGTCTC 1 cut(s) 935
Eco32I GATATC 1 cut(s) 433
Eco88I CYCGRG 1 cut(s) 851
EcoO109I RGGNCCY 1 cut(s) 228
EcoRII CCWGG 4 cut(s) 231, 435, 581, 861
EcoRV GATATC 1 cut(s) 433
EcoT14I CCWWGG 1 cut(s) 564
EcoT38I GRGCYC 1 cut(s) 232
ErhI CCWWGG 1 cut(s) 564
FaeI CATG 6 cut(s) 67, 297, 356, 482, 611, 628
FalI AAGNNNNNCTT 2 cut(s) 200, 232
FatI CATG 6 cut(s) 63, 293, 352, 478, 607, 624
FauI CCCGC 1 cut(s) 652
FblI GTMKAC 1 cut(s) 60
Fnu4HI GCNGC 3 cut(s) 162, 561, 831
FriOI GRGCYC 1 cut(s) 232
Fsp4HI GCNGC 3 cut(s) 162, 561, 831
FspBI CTAG 3 cut(s) 96, 140, 840
GlaI GCGC 1 cut(s) 697
GluI GCNGC 3 cut(s) 162, 561, 831
GsaI CCCAGC 2 cut(s) 46, 427
GsuI CTGGAG 2 cut(s) 237, 871
HaeII RGCGCY 1 cut(s) 699
HaeIII GGCC 6 cut(s) 161, 230, 485, 495, 730, 959
HapII CCGG 2 cut(s) 374, 947
HgaI GACGC 1 cut(s) 266
HhaI GCGC 1 cut(s) 698
Hin1II CATG 6 cut(s) 67, 297, 356, 482, 611, 628
Hin6I GCGC 1 cut(s) 696
HinP1I GCGC 1 cut(s) 696
HincII GTYRAC 1 cut(s) 742
HindII GTYRAC 1 cut(s) 742
HinfI GANTC 5 cut(s) 7, 80, 86, 455, 854
HpaII CCGG 2 cut(s) 374, 947
HphI GGTGA 2 cut(s) 877, 961
Hpy166II GTNNAC 2 cut(s) 61, 742
Hpy188I TCNGA 4 cut(s) 85, 93, 515, 685
Hpy188III TCNNGA 3 cut(s) 254, 332, 888
Hpy8I GTNNAC 2 cut(s) 61, 742
HpyAV CCTTC 3 cut(s) 496, 606, 730
HpyCH4III ACNGT 4 cut(s) 520, 540, 821, 964
HpyCH4IV ACGT 2 cut(s) 57, 299
HpyCH4V TGCA 1 cut(s) 187
HpyF3I CTNAG 1 cut(s) 90
HpySE526I ACGT 2 cut(s) 57, 299
Hsp92II CATG 6 cut(s) 67, 297, 356, 482, 611, 628
HspAI GCGC 1 cut(s) 696
Kzo9I GATC 3 cut(s) 30, 621, 795
LmnI GCTCC 1 cut(s) 773
Lsp1109I GCAGC 2 cut(s) 547, 817
LweI GCATC 2 cut(s) 185, 903
MabI ACCWGGT 2 cut(s) 581, 861
MaeI CTAG 3 cut(s) 96, 140, 840
MaeII ACGT 2 cut(s) 57, 299
MaeIII GTNAC 3 cut(s) 383, 855, 949
MalI GATC 3 cut(s) 32, 623, 797
MboI GATC 3 cut(s) 30, 621, 795
MboII GAAGA 3 cut(s) 284, 287, 884
MhlI GDGCHC 3 cut(s) 232, 619, 885
MlsI TGGCCA 1 cut(s) 959
MluCI AATT 3 cut(s) 110, 670, 781
MluNI TGGCCA 1 cut(s) 959
MlyI GAGTC 1 cut(s) 863
MmeI TCCRAC 1 cut(s) 382
MnlI CCTC 9 cut(s) 27, 113, 116, 219, 468, 583, 645, 716, 926
Mox20I TGGCCA 1 cut(s) 959
MroXI GAANNNNTTC 1 cut(s) 128
MscI TGGCCA 1 cut(s) 959
MseI TTAA 1 cut(s) 804
Msp20I TGGCCA 1 cut(s) 959
MspI CCGG 2 cut(s) 374, 947
MspR9I CCNGG 5 cut(s) 233, 437, 583, 863, 947
Mva1269I GAATGC 1 cut(s) 548
MvaI CCWGG 4 cut(s) 233, 437, 583, 863
MvnI CGCG 1 cut(s) 659
NciI CCSGG 1 cut(s) 947
NdeII GATC 3 cut(s) 30, 621, 795
NlaIII CATG 6 cut(s) 67, 297, 356, 482, 611, 628
NlaIV GGNNCC 1 cut(s) 230
NmeAIII GCCGAG 1 cut(s) 498
NmuCI GTSAC 2 cut(s) 855, 949
NspI RCATGY 1 cut(s) 482
NspV TTCGAA 1 cut(s) 150
PasI CCCWGGG 1 cut(s) 232
PctI GAATGC 1 cut(s) 548
PdmI GAANNNNTTC 1 cut(s) 128
PfeI GAWTC 4 cut(s) 7, 80, 86, 455
PfoI TCCNGGA 1 cut(s) 435
PkrI GCNGC 3 cut(s) 163, 562, 832
PleI GAGTC 1 cut(s) 862
PpsI GAGTC 1 cut(s) 862
Psp6I CCWGG 4 cut(s) 231, 435, 581, 861
PspFI CCCAGC 2 cut(s) 42, 423
PspGI CCWGG 4 cut(s) 231, 435, 581, 861
PspN4I GGNNCC 1 cut(s) 230
PspOMI GGGCCC 1 cut(s) 228
PspPI GGNCC 2 cut(s) 228, 229
PstNI CAGNNNCTG 1 cut(s) 260
RsaI GTAC 3 cut(s) 49, 245, 298
RsaNI GTAC 3 cut(s) 48, 244, 297
SaqAI TTAA 1 cut(s) 804
SatI GCNGC 3 cut(s) 162, 561, 831
Sau3AI GATC 3 cut(s) 30, 621, 795
Sau96I GGNCC 2 cut(s) 228, 229
SchI GAGTC 1 cut(s) 863
ScrFI CCNGG 5 cut(s) 233, 437, 583, 863, 947
SduI GDGCHC 3 cut(s) 232, 619, 885
SexAI ACCWGGT 2 cut(s) 581, 861
SfaNI GCATC 2 cut(s) 185, 903
SfcI CTRYAG 2 cut(s) 318, 362
SfuI TTCGAA 1 cut(s) 150
Sse9I AATT 3 cut(s) 110, 670, 781
SsiI CCGC 2 cut(s) 162, 659
SspMI CTAG 3 cut(s) 96, 140, 840
StyD4I CCNGG 5 cut(s) 231, 435, 581, 861, 945
StyI CCWWGG 1 cut(s) 564
TaaI ACNGT 4 cut(s) 520, 540, 821, 964
TaiI ACGT 2 cut(s) 60, 302
TaqI TCGA 5 cut(s) 5, 150, 552, 588, 912
TasI AATT 3 cut(s) 110, 670, 781
TauI GCSGC 1 cut(s) 164
TfiI GAWTC 4 cut(s) 7, 80, 86, 455
Tru1I TTAA 1 cut(s) 804
Tru9I TTAA 1 cut(s) 804
TscAI CASTG 2 cut(s) 244, 967
TseFI GTSAC 2 cut(s) 855, 949
TseI GCWGC 2 cut(s) 560, 830
Tsp45I GTSAC 2 cut(s) 855, 949
TspDTI ATGAA 2 cut(s) 80, 279
TspRI CASTG 2 cut(s) 244, 967
XapI RAATTY 1 cut(s) 110
XceI RCATGY 1 cut(s) 482
XmiI GTMKAC 1 cut(s) 60
XmnI GAANNNNTTC 1 cut(s) 128
XspI CTAG 3 cut(s) 96, 140, 840
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.