Rh6AG039200

Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0002089
Physical Location & Seq
Reverse (-)
5418605 .. 5423174
4570 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG039200.1

Sequence Viewer

Length: 1113 bp
ATGGTGGAGAGGCAGCACGTTGGCACTCTCAAAAATTGCATGGTGGCCCTCGATTGCAGTCAAGTTTGCCTAAATCCAAAAAGTCTGAAAAAAGGTGAAATTTATTCTGATGGCATTAACTGGGATGATCTTGGGTTTGGACTGATTCCAATCGATCACATGTACACCATGAAATGCTCCGACGGAGAAAACTTTTCACAAGGACATCTCTCTCCCTTTGGAAAGATTGAGCTTTGCCCATCTGCTGGAATATTGAATTATGGACAGGGACTATTCGAAGGTCTTAAGGCGACCAGAACAGAAGATGGTCGTATTATGCTGTTTCGGCCCCAAGAGAATGCTCTAAGAATGAATATGGGTGCAGAGAGAATGTGCATGCCATCTCCATCCGTTGAGCAATTTGTTGATGCTGTGAAGCAAACAGTCTTCGCCAACAAGCGTTGGGTACCACCTCCAGGAAAAGGATCATTGTATATTAGGCCTTTGCTCGTGGGGAGTGGATCTAATCTGTGCTTGGGGCCGGGACTGGAGTATACATTCCTAATATTTGCTTCTCCAGTTGGTAATTATCACAAGGGAAGGGCAGCCCTCAATTTGTATGTTGAGCATAAAATCCACAGAGCTACTCCTGGTGGAACTGGAGGTGTCAAGTCTGTCACCAATTACTCACCTGTTTACCAAACACAACAGCAAGCAAGGGCCAAGGGGTTCTCTGATGTCTTATTCCTAGATTCTGCAACTGGTAAAAACATTGAGGAGATTGTACTAGCTAACATTTTCATTCTGAAGGGTAATGTCATTTCAACTCCAACGCTGAAACATGGAACTATCCTCCCTGGAGTAACCCGTAAAAGCATCATTGATATTGCCCTTGATTTTGGTTACCAGGTGGAGGAGCGTGTGATCCCAGTGGAGGATTTACTTGCAGCCGATGAAGCTTTCTGCACAGGAACTGCCGTGGTTGTCAACCCTATTGGCGCTGTAACTTATCAAGACAAGAGGGTTGAATACAAAACCGGAGGAGCGTTATGTCAGAAACTGTATGAAACGCTAACAGGAATCCAAACAGGTCGTCTTGAGGACAAGAAGGGATGGACCCTAGAGGTCAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00270 ko00280 ko00290 ko00770 ko01100 ko01110 ko01130 ko01210 ko01230 map00270 map00280 map00290 map00770 map01100 map01110 map01130 map01210 map01230
Pfam Domains
Protein Families
Aminotran_4

Protein Analysis

370

Amino Acids

40.49

Weight (kDa)

7.54

Isoelectric Point (pI)

36.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aminotran_4 PF01063 90 - 326 8.7e-31 Amino-transferase class IV
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 445
AccB1I GGYRCC 1 cut(s) 445
AccB7I CCANNNNNTGG 1 cut(s) 245
AccI GTMKAC 1 cut(s) 533
AclWI GGATC 3 cut(s) 472, 508, 898
AcsI RAATTY 1 cut(s) 99
AcuI CTGAAG 1 cut(s) 806
AfaI GTAC 3 cut(s) 164, 447, 765
AfiI CCNNNNNNNGG 5 cut(s) 245, 455, 461, 892, 913
AflII CTTAAG 1 cut(s) 284
AflIII ACRYGT 1 cut(s) 159
AgsI TTSAA 3 cut(s) 256, 804, 1007
AjnI CCWGG 4 cut(s) 454, 628, 835, 885
AluBI AGCT 4 cut(s) 232, 623, 770, 938
AluI AGCT 4 cut(s) 232, 623, 770, 938
AlwI GGATC 3 cut(s) 472, 508, 898
AlwNI CAGNNNCTG 2 cut(s) 953, 1039
AoxI GGCC 5 cut(s) 45, 326, 479, 518, 699
ApeKI GCWGC 3 cut(s) 13, 584, 926
ApoI RAATTY 1 cut(s) 99
ArsI GACNNNNNNTTYG 2 cut(s) 1057, 1089
Asp718I GGTACC 1 cut(s) 445
AspLEI GCGC 1 cut(s) 980
AspS9I GGNCC 5 cut(s) 46, 327, 518, 699, 1095
AsuC2I CCSGG 1 cut(s) 522
AsuHPI GGTGA 3 cut(s) 107, 649, 660
AsuII TTCGAA 1 cut(s) 276
AvaII GGWCC 1 cut(s) 1095
BanI GGYRCC 1 cut(s) 445
BauI CACGAG 1 cut(s) 488
BbsI GAAGAC 1 cut(s) 418
BbvI GCAGC 3 cut(s) 25, 596, 938
BccI CCATC 6 cut(s) 104, 247, 299, 388, 394, 1086
BceAI ACGGC 1 cut(s) 941
BciT130I CCWGG 4 cut(s) 456, 630, 837, 887
BcnI CCSGG 1 cut(s) 522
BfaI CTAG 3 cut(s) 728, 767, 1100
BfoI RGCGCY 1 cut(s) 981
BfrI CTTAAG 1 cut(s) 284
BisI GCNGC 3 cut(s) 14, 585, 927
BlsI GCNGC 3 cut(s) 15, 586, 928
Bme1390I CCNGG 5 cut(s) 456, 522, 630, 837, 887
Bme18I GGWCC 1 cut(s) 1095
BmgT120I GGNCC 5 cut(s) 46, 327, 518, 699, 1095
BmiI GGNNCC 4 cut(s) 329, 447, 519, 1097
BmrFI CCNGG 5 cut(s) 456, 522, 630, 837, 887
BmrI ACTGGG 2 cut(s) 130, 902
BmsI GCATC 2 cut(s) 397, 864
BmuI ACTGGG 2 cut(s) 130, 902
BpiI GAAGAC 1 cut(s) 418
BpmI CTGGAG 5 cut(s) 438, 540, 548, 660, 858
Bpu14I TTCGAA 1 cut(s) 276
BpuEI CTTGAG 1 cut(s) 1097
BpuMI CCSGG 1 cut(s) 522
Bsa29I ATCGAT 1 cut(s) 153
BsaBI GATNNNNATC 1 cut(s) 149
BsaJI CCNNGG 3 cut(s) 702, 835, 957
BsaWI WCCGGW 1 cut(s) 1016
Bsc4I CCNNNNNNNGG 5 cut(s) 245, 455, 461, 892, 913
Bse1I ACTGG 6 cut(s) 125, 531, 557, 643, 745, 908
Bse8I GATNNNNATC 1 cut(s) 149
BseBI CCWGG 4 cut(s) 456, 630, 837, 887
BseCI ATCGAT 1 cut(s) 153
BseDI CCNNGG 3 cut(s) 702, 835, 957
BseGI GGATG 3 cut(s) 130, 386, 1097
BseJI GATNNNNATC 1 cut(s) 149
BseLI CCNNNNNNNGG 5 cut(s) 245, 455, 461, 892, 913
BseNI ACTGG 6 cut(s) 125, 531, 557, 643, 745, 908
BseRI GAGGAG 3 cut(s) 770, 908, 1035
BseXI GCAGC 3 cut(s) 25, 596, 938
BsgI GTGCAG 2 cut(s) 381, 928
BshFI GGCC 5 cut(s) 47, 328, 481, 520, 701
BshNI GGYRCC 1 cut(s) 445
BshVI ATCGAT 1 cut(s) 153
BsiSI CCGG 2 cut(s) 521, 1017
BslFI GGGAC 2 cut(s) 282, 537
BslI CCNNNNNNNGG 5 cut(s) 245, 455, 461, 892, 913
BsmFI GGGAC 2 cut(s) 282, 537
BsmI GAATGC 1 cut(s) 343
BsnI GGCC 5 cut(s) 47, 328, 481, 520, 701
Bsp119I TTCGAA 1 cut(s) 276
Bsp1407I TGTACA 1 cut(s) 162
Bsp143I GATC 5 cut(s) 127, 154, 464, 500, 903
BspANI GGCC 5 cut(s) 47, 328, 481, 520, 701
BspDI ATCGAT 1 cut(s) 153
BspLI GGNNCC 4 cut(s) 329, 447, 519, 1097
BspPI GGATC 3 cut(s) 472, 508, 898
BspT104I TTCGAA 1 cut(s) 276
BspT107I GGYRCC 1 cut(s) 445
BspTI CTTAAG 1 cut(s) 284
BsrGI TGTACA 1 cut(s) 162
BsrI ACTGG 6 cut(s) 125, 531, 557, 643, 745, 908
BssECI CCNNGG 3 cut(s) 702, 835, 957
BssMI GATC 5 cut(s) 127, 154, 464, 500, 903
BssNAI GTATAC 1 cut(s) 534
BssSI CACGAG 1 cut(s) 488
BssT1I CCWWGG 1 cut(s) 702
Bst1107I GTATAC 1 cut(s) 534
Bst2BI CACGAG 1 cut(s) 488
Bst2UI CCWGG 4 cut(s) 456, 630, 837, 887
Bst4CI ACNGT 2 cut(s) 424, 1041
BstAFI CTTAAG 1 cut(s) 284
BstAUI TGTACA 1 cut(s) 162
BstBI TTCGAA 1 cut(s) 276
BstC8I GCNNGC 2 cut(s) 377, 693
BstDEI CTNAG 1 cut(s) 344
BstDSI CCRYGG 1 cut(s) 957
BstEII GGTNACC 1 cut(s) 881
BstF5I GGATG 3 cut(s) 130, 386, 1097
BstH2I RGCGCY 1 cut(s) 981
BstHHI GCGC 1 cut(s) 980
BstKTI GATC 5 cut(s) 130, 157, 467, 503, 906
BstMBI GATC 5 cut(s) 127, 154, 464, 500, 903
BstMWI GCNNNNNNNGC 2 cut(s) 325, 935
BstNI CCWGG 4 cut(s) 456, 630, 837, 887
BstNSI RCATGY 2 cut(s) 163, 379
BstPI GGTNACC 1 cut(s) 881
BstSCI CCNGG 5 cut(s) 454, 520, 628, 835, 885
BstV1I GCAGC 3 cut(s) 25, 596, 938
BstV2I GAAGAC 1 cut(s) 418
BstX2I RGATCY 1 cut(s) 500
BstYI RGATCY 1 cut(s) 500
BstZ17I GTATAC 1 cut(s) 534
Bsu15I ATCGAT 1 cut(s) 153
BsuRI GGCC 5 cut(s) 47, 328, 481, 520, 701
BsuTUI ATCGAT 1 cut(s) 153
BtgI CCRYGG 1 cut(s) 957
BtsCI GGATG 3 cut(s) 130, 386, 1097
BtsIMutI CAGTG 1 cut(s) 915
Cac8I GCNNGC 2 cut(s) 377, 693
CaiI CAGNNNCTG 2 cut(s) 953, 1039
CfoI GCGC 1 cut(s) 980
Cfr13I GGNCC 5 cut(s) 46, 327, 518, 699, 1095
ClaI ATCGAT 1 cut(s) 153
CsiI ACCWGGT 1 cut(s) 885
Csp6I GTAC 3 cut(s) 163, 446, 764
CviAII CATG 5 cut(s) 40, 160, 169, 376, 821
CviQI GTAC 3 cut(s) 163, 446, 764
DdeI CTNAG 1 cut(s) 344
DpnI GATC 5 cut(s) 129, 156, 466, 502, 905
DpnII GATC 5 cut(s) 127, 154, 464, 500, 903
Eco130I CCWWGG 1 cut(s) 702
Eco147I AGGCCT 1 cut(s) 481
Eco47I GGWCC 1 cut(s) 1095
Eco57I CTGAAG 1 cut(s) 806
Eco91I GGTNACC 1 cut(s) 881
EcoO65I GGTNACC 1 cut(s) 881
EcoRII CCWGG 4 cut(s) 454, 628, 835, 885
EcoT14I CCWWGG 1 cut(s) 702
ErhI CCWWGG 1 cut(s) 702
FaeI CATG 5 cut(s) 43, 163, 172, 379, 824
FaqI GGGAC 2 cut(s) 282, 537
FatI CATG 5 cut(s) 39, 159, 168, 375, 820
FblI GTMKAC 1 cut(s) 533
Fnu4HI GCNGC 3 cut(s) 14, 585, 927
FokI GGATG 3 cut(s) 137, 373, 1104
Fsp4HI GCNGC 3 cut(s) 14, 585, 927
FspBI CTAG 3 cut(s) 728, 767, 1100
GlaI GCGC 1 cut(s) 979
GluI GCNGC 3 cut(s) 14, 585, 927
GsuI CTGGAG 5 cut(s) 438, 540, 548, 660, 858
HaeII RGCGCY 1 cut(s) 981
HaeIII GGCC 5 cut(s) 47, 328, 481, 520, 701
HapII CCGG 2 cut(s) 521, 1017
HhaI GCGC 1 cut(s) 980
Hin1II CATG 5 cut(s) 43, 163, 172, 379, 824
Hin6I GCGC 1 cut(s) 978
HinP1I GCGC 1 cut(s) 978
HincII GTYRAC 2 cut(s) 967, 1108
HindII GTYRAC 2 cut(s) 967, 1108
HindIII AAGCTT 1 cut(s) 936
HinfI GANTC 3 cut(s) 145, 731, 1059
HpaII CCGG 2 cut(s) 521, 1017
HphI GGTGA 3 cut(s) 107, 649, 660
Hpy166II GTNNAC 5 cut(s) 165, 534, 676, 967, 1108
Hpy188I TCNGA 6 cut(s) 87, 109, 181, 715, 786, 1035
Hpy188III TCNNGA 2 cut(s) 992, 1076
Hpy8I GTNNAC 5 cut(s) 165, 534, 676, 967, 1108
Hpy99I CGWCG 1 cut(s) 185
HpyAV CCTTC 4 cut(s) 272, 573, 781, 1081
HpyCH4III ACNGT 2 cut(s) 424, 1041
HpyCH4IV ACGT 1 cut(s) 18
HpyCH4V TGCA 7 cut(s) 39, 57, 362, 375, 737, 926, 945
HpyF10VI GCNNNNNNNGC 2 cut(s) 325, 935
HpyF3I CTNAG 1 cut(s) 344
HpySE526I ACGT 1 cut(s) 18
Hsp92II CATG 5 cut(s) 43, 163, 172, 379, 824
HspAI GCGC 1 cut(s) 978
KpnI GGTACC 1 cut(s) 449
Kzo9I GATC 5 cut(s) 127, 154, 464, 500, 903
LmnI GCTCC 3 cut(s) 182, 895, 1022
Lsp1109I GCAGC 3 cut(s) 25, 596, 938
LweI GCATC 2 cut(s) 397, 864
MabI ACCWGGT 1 cut(s) 885
MaeI CTAG 3 cut(s) 728, 767, 1100
MaeII ACGT 1 cut(s) 18
MaeIII GTNAC 4 cut(s) 655, 841, 881, 982
MalI GATC 5 cut(s) 129, 156, 466, 502, 905
MboI GATC 5 cut(s) 127, 154, 464, 500, 903
MboII GAAGA 2 cut(s) 314, 418
MflI RGATCY 1 cut(s) 500
MluCI AATT 7 cut(s) 34, 99, 256, 398, 565, 592, 661
MmeI TCCRAC 2 cut(s) 204, 833
MseI TTAA 2 cut(s) 117, 285
MspCI CTTAAG 1 cut(s) 284
MspI CCGG 2 cut(s) 521, 1017
MspR9I CCNGG 5 cut(s) 456, 522, 630, 837, 887
Mva1269I GAATGC 1 cut(s) 343
MvaI CCWGG 4 cut(s) 456, 630, 837, 887
MwoI GCNNNNNNNGC 2 cut(s) 325, 935
NciI CCSGG 1 cut(s) 522
NdeII GATC 5 cut(s) 127, 154, 464, 500, 903
NlaIII CATG 5 cut(s) 43, 163, 172, 379, 824
NlaIV GGNNCC 4 cut(s) 329, 447, 519, 1097
NmuCI GTSAC 1 cut(s) 655
NspI RCATGY 2 cut(s) 163, 379
NspV TTCGAA 1 cut(s) 276
PaeI GCATGC 1 cut(s) 379
PceI AGGCCT 1 cut(s) 481
PciI ACATGT 1 cut(s) 159
PctI GAATGC 1 cut(s) 343
PfeI GAWTC 3 cut(s) 145, 731, 1059
PflMI CCANNNNNTGG 1 cut(s) 245
PfoI TCCNGGA 1 cut(s) 454
PkrI GCNGC 3 cut(s) 15, 586, 928
PscI ACATGT 1 cut(s) 159
Psp6I CCWGG 4 cut(s) 454, 628, 835, 885
PspEI GGTNACC 1 cut(s) 881
PspGI CCWGG 4 cut(s) 454, 628, 835, 885
PspN4I GGNNCC 4 cut(s) 329, 447, 519, 1097
PspPI GGNCC 5 cut(s) 46, 327, 518, 699, 1095
PstNI CAGNNNCTG 2 cut(s) 953, 1039
PsuI RGATCY 1 cut(s) 500
RsaI GTAC 3 cut(s) 164, 447, 765
RsaNI GTAC 3 cut(s) 163, 446, 764
SaqAI TTAA 2 cut(s) 117, 285
SatI GCNGC 3 cut(s) 14, 585, 927
Sau3AI GATC 5 cut(s) 127, 154, 464, 500, 903
Sau96I GGNCC 5 cut(s) 46, 327, 518, 699, 1095
ScrFI CCNGG 5 cut(s) 456, 522, 630, 837, 887
SexAI ACCWGGT 1 cut(s) 885
SfaNI GCATC 2 cut(s) 397, 864
SfuI TTCGAA 1 cut(s) 276
SinI GGWCC 1 cut(s) 1095
SmlI CTYRAG 2 cut(s) 284, 1076
SmoI CTYRAG 2 cut(s) 284, 1076
SphI GCATGC 1 cut(s) 379
Sse9I AATT 7 cut(s) 34, 99, 256, 398, 565, 592, 661
SseBI AGGCCT 1 cut(s) 481
SspI AATATT 2 cut(s) 252, 546
SspMI CTAG 3 cut(s) 728, 767, 1100
StuI AGGCCT 1 cut(s) 481
StyD4I CCNGG 5 cut(s) 454, 520, 628, 835, 885
StyI CCWWGG 1 cut(s) 702
TaaI ACNGT 2 cut(s) 424, 1041
TaiI ACGT 1 cut(s) 21
TaqI TCGA 3 cut(s) 51, 153, 276
TasI AATT 7 cut(s) 34, 99, 256, 398, 565, 592, 661
TatI WGTACW 2 cut(s) 162, 763
TfiI GAWTC 3 cut(s) 145, 731, 1059
Tru1I TTAA 2 cut(s) 117, 285
Tru9I TTAA 2 cut(s) 117, 285
TscAI CASTG 1 cut(s) 915
TseFI GTSAC 1 cut(s) 655
TseI GCWGC 3 cut(s) 13, 584, 926
Tsp45I GTSAC 1 cut(s) 655
TspDTI ATGAA 5 cut(s) 185, 365, 769, 948, 1059
TspGWI ACGGA 2 cut(s) 198, 379
TspRI CASTG 1 cut(s) 915
Van91I CCANNNNNTGG 1 cut(s) 245
Vha464I CTTAAG 1 cut(s) 284
VpaK11BI GGWCC 1 cut(s) 1095
XapI RAATTY 1 cut(s) 99
XceI RCATGY 2 cut(s) 163, 379
XmiI GTMKAC 1 cut(s) 533
XspI CTAG 3 cut(s) 728, 767, 1100
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.