Rw6G003390

Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0002089
Physical Location & Seq
Reverse (-)
5364857 .. 5374333
9477 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G003390.1

Sequence Viewer

Length: 1074 bp
ATGGTTGCTGATTTGATAAAAAAAAAAAAAAGTACCAGTGAATCGACTAGTTTTTCAAAATGTCTGAAAAACGGTGAAATGTATGCTGATGGCATTAACTGGGATGATCTTGTTTTTGGATTGATTCCAATCGATTACATGTACACCATGAAATGCTCCGAAGGAGAAAACTTTTCACAAGGACATCTCTCTCCCTTTGGAAAGATTGAGCTTTGCCCATCTGCTGGAATATTAAATTATGGACAGGGACTATTCAAAGGTCTTAAGGCGAACAGAACAGAAGATGGTCGTATTCTGCTGTTTCGGCCCCAAGAGAATGCTCTAAGAATGAAGATGGGTGCAGAGAGAATGTGCATGTCATCTCCATCCGTTGAGCAATTTGTTAATGCTGTGAAGGAAACAGTACCACCTCCAGGAAATGGATCACTGTATATTAGGCCTTTGCTCGTGGGGAGTGGATCTAATCTGGGCTTGGGGCCAGGACTAGACATTAACACATTCCTAATATTTGCTTCTCCAGTTGGTTATTATCACAAGGGAAGGGCAGCCCTCATTCTGTATGTTAAGCATAAAATCCACAGAGCTACTCCTGGTGGAACTGGAGGTGTCAAATCTGTCACCAATTACTCACCTGTCTACCAAACGCAACAGCAAGCAAGGGCCAAGGGGTTTTCTGATGTCTTATTCCTAGATTCTGCAACTGGTAAAAACATTGAGGAGATTGTAGCAGCTAACATTTTCATTCTGAAGGGTAATGTCATTTCAACTCCAACACTGGAACATAATGCCCTTGATTTTGGTTACCAGGTGGAGGAGCGTGTGATCCCGGTGGAGGATTTACTTGCAGCCGATGAAGCTTTCTGCACAGGAACTGTCGTGGTTGTCAACCCTATTGGCGCTGTAACTTATCAAGACAAGAGGGTTGAACACAAAACAGGAGGAGCATTATGTCAGAAACTGTATGAAAAGCTGACAGGAATCCATACAGGTCGTCTTGAGGACAAGAAGGGATGGACCCTAGAGGTCAACAGAGCTTCTTTATTGTACCAAACCCCAGAAGCTTGTCATATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00270 ko00280 ko00290 ko00770 ko01100 ko01110 ko01130 ko01210 ko01230 map00270 map00280 map00290 map00770 map01100 map01110 map01130 map01210 map01230
Pfam Domains
Protein Families
Aminotran_4

Protein Analysis

357

Amino Acids

39.03

Weight (kDa)

8.06

Isoelectric Point (pI)

41.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aminotran_4 PF01063 92 - 299 5.4e-20 Amino-transferase class IV
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 224, 419
AccI GTMKAC 1 cut(s) 636
AclWI GGATC 3 cut(s) 430, 466, 817
AcuI CTGAAG 1 cut(s) 767
AfaI GTAC 4 cut(s) 34, 143, 405, 1046
AfiI CCNNNNNNNGG 5 cut(s) 224, 413, 419, 811, 832
AflII CTTAAG 1 cut(s) 263
AflIII ACRYGT 1 cut(s) 138
AgsI TTSAA 4 cut(s) 57, 256, 765, 926
AhlI ACTAGT 1 cut(s) 47
AjnI CCWGG 4 cut(s) 412, 478, 589, 804
AluBI AGCT 7 cut(s) 211, 584, 731, 857, 970, 1034, 1061
AluI AGCT 7 cut(s) 211, 584, 731, 857, 970, 1034, 1061
AlwI GGATC 3 cut(s) 430, 466, 817
AlwNI CAGNNNCTG 2 cut(s) 872, 958
AoxI GGCC 4 cut(s) 305, 437, 476, 660
ApeKI GCWGC 3 cut(s) 545, 728, 845
AspLEI GCGC 1 cut(s) 899
AspS9I GGNCC 4 cut(s) 306, 476, 660, 1014
AsuC2I CCSGG 1 cut(s) 827
AsuHPI GGTGA 3 cut(s) 86, 610, 621
AvaII GGWCC 1 cut(s) 1014
BauI CACGAG 1 cut(s) 446
BbvI GCAGC 3 cut(s) 557, 740, 857
BccI CCATC 6 cut(s) 83, 226, 278, 328, 373, 1005
BciT130I CCWGG 4 cut(s) 414, 480, 591, 806
BcnI CCSGG 1 cut(s) 827
BcuI ACTAGT 1 cut(s) 47
BfaI CTAG 4 cut(s) 48, 485, 689, 1019
BfoI RGCGCY 1 cut(s) 900
BfrI CTTAAG 1 cut(s) 263
BisI GCNGC 3 cut(s) 546, 729, 846
BlsI GCNGC 3 cut(s) 547, 730, 847
Bme1390I CCNGG 5 cut(s) 414, 480, 591, 806, 827
Bme18I GGWCC 1 cut(s) 1014
BmgT120I GGNCC 4 cut(s) 306, 476, 660, 1014
BmiI GGNNCC 3 cut(s) 308, 477, 1016
BmrFI CCNGG 5 cut(s) 414, 480, 591, 806, 827
BmrI ACTGGG 1 cut(s) 109
BmuI ACTGGG 1 cut(s) 109
BpmI CTGGAG 3 cut(s) 396, 501, 621
BpuEI CTTGAG 1 cut(s) 1016
BpuMI CCSGG 1 cut(s) 827
Bsa29I ATCGAT 1 cut(s) 132
BsaBI GATNNNNATC 1 cut(s) 128
BsaJI CCNNGG 1 cut(s) 663
Bsc4I CCNNNNNNNGG 5 cut(s) 224, 413, 419, 811, 832
Bse1I ACTGG 6 cut(s) 36, 104, 518, 604, 706, 780
Bse8I GATNNNNATC 1 cut(s) 128
BseBI CCWGG 4 cut(s) 414, 480, 591, 806
BseCI ATCGAT 1 cut(s) 132
BseDI CCNNGG 1 cut(s) 663
BseGI GGATG 3 cut(s) 109, 365, 1016
BseJI GATNNNNATC 1 cut(s) 128
BseLI CCNNNNNNNGG 5 cut(s) 224, 413, 419, 811, 832
BseNI ACTGG 6 cut(s) 36, 104, 518, 604, 706, 780
BseRI GAGGAG 3 cut(s) 731, 827, 954
BseXI GCAGC 3 cut(s) 557, 740, 857
BsgI GTGCAG 2 cut(s) 360, 847
BshFI GGCC 4 cut(s) 307, 439, 478, 662
BshVI ATCGAT 1 cut(s) 132
BsiSI CCGG 1 cut(s) 827
BslFI GGGAC 1 cut(s) 261
BslI CCNNNNNNNGG 5 cut(s) 224, 413, 419, 811, 832
BsmFI GGGAC 1 cut(s) 261
BsmI GAATGC 1 cut(s) 322
BsnI GGCC 4 cut(s) 307, 439, 478, 662
Bsp1407I TGTACA 1 cut(s) 141
Bsp143I GATC 4 cut(s) 106, 422, 458, 822
BspANI GGCC 4 cut(s) 307, 439, 478, 662
BspDI ATCGAT 1 cut(s) 132
BspLI GGNNCC 3 cut(s) 308, 477, 1016
BspPI GGATC 3 cut(s) 430, 466, 817
BspTI CTTAAG 1 cut(s) 263
BsrGI TGTACA 1 cut(s) 141
BsrI ACTGG 6 cut(s) 36, 104, 518, 604, 706, 780
BssECI CCNNGG 1 cut(s) 663
BssMI GATC 4 cut(s) 106, 422, 458, 822
BssSI CACGAG 1 cut(s) 446
BssT1I CCWWGG 1 cut(s) 663
Bst2BI CACGAG 1 cut(s) 446
Bst2UI CCWGG 4 cut(s) 414, 480, 591, 806
Bst4CI ACNGT 5 cut(s) 74, 403, 429, 874, 960
BstAFI CTTAAG 1 cut(s) 263
BstAUI TGTACA 1 cut(s) 141
BstC8I GCNNGC 1 cut(s) 654
BstDEI CTNAG 1 cut(s) 323
BstEII GGTNACC 1 cut(s) 800
BstF5I GGATG 3 cut(s) 109, 365, 1016
BstH2I RGCGCY 1 cut(s) 900
BstHHI GCGC 1 cut(s) 899
BstKTI GATC 4 cut(s) 109, 425, 461, 825
BstMBI GATC 4 cut(s) 106, 422, 458, 822
BstMWI GCNNNNNNNGC 2 cut(s) 304, 854
BstNI CCWGG 4 cut(s) 414, 480, 591, 806
BstNSI RCATGY 2 cut(s) 142, 358
BstPI GGTNACC 1 cut(s) 800
BstSCI CCNGG 5 cut(s) 412, 478, 589, 804, 825
BstV1I GCAGC 3 cut(s) 557, 740, 857
BstX2I RGATCY 1 cut(s) 458
BstYI RGATCY 1 cut(s) 458
Bsu15I ATCGAT 1 cut(s) 132
BsuRI GGCC 4 cut(s) 307, 439, 478, 662
BsuTUI ATCGAT 1 cut(s) 132
BtsCI GGATG 3 cut(s) 109, 365, 1016
BtsIMutI CAGTG 3 cut(s) 43, 425, 773
Cac8I GCNNGC 1 cut(s) 654
CaiI CAGNNNCTG 2 cut(s) 872, 958
CfoI GCGC 1 cut(s) 899
Cfr13I GGNCC 4 cut(s) 306, 476, 660, 1014
ClaI ATCGAT 1 cut(s) 132
CsiI ACCWGGT 1 cut(s) 804
Csp6I GTAC 4 cut(s) 33, 142, 404, 1045
CviAII CATG 3 cut(s) 139, 148, 355
CviQI GTAC 4 cut(s) 33, 142, 404, 1045
DdeI CTNAG 1 cut(s) 323
DpnI GATC 4 cut(s) 108, 424, 460, 824
DpnII GATC 4 cut(s) 106, 422, 458, 822
Eco130I CCWWGG 1 cut(s) 663
Eco147I AGGCCT 1 cut(s) 439
Eco47I GGWCC 1 cut(s) 1014
Eco57I CTGAAG 1 cut(s) 767
Eco91I GGTNACC 1 cut(s) 800
EcoO65I GGTNACC 1 cut(s) 800
EcoRII CCWGG 4 cut(s) 412, 478, 589, 804
EcoT14I CCWWGG 1 cut(s) 663
ErhI CCWWGG 1 cut(s) 663
FaeI CATG 3 cut(s) 142, 151, 358
FaqI GGGAC 1 cut(s) 261
FatI CATG 3 cut(s) 138, 147, 354
FblI GTMKAC 1 cut(s) 636
Fnu4HI GCNGC 3 cut(s) 546, 729, 846
FokI GGATG 3 cut(s) 116, 352, 1023
Fsp4HI GCNGC 3 cut(s) 546, 729, 846
FspBI CTAG 4 cut(s) 48, 485, 689, 1019
GlaI GCGC 1 cut(s) 898
GluI GCNGC 3 cut(s) 546, 729, 846
GsuI CTGGAG 3 cut(s) 396, 501, 621
HaeII RGCGCY 1 cut(s) 900
HaeIII GGCC 4 cut(s) 307, 439, 478, 662
HapII CCGG 1 cut(s) 827
HhaI GCGC 1 cut(s) 899
Hin1II CATG 3 cut(s) 142, 151, 358
Hin6I GCGC 1 cut(s) 897
HinP1I GCGC 1 cut(s) 897
HincII GTYRAC 2 cut(s) 886, 1027
HindII GTYRAC 2 cut(s) 886, 1027
HindIII AAGCTT 2 cut(s) 855, 1059
HinfI GANTC 4 cut(s) 41, 124, 692, 978
HpaII CCGG 1 cut(s) 827
HphI GGTGA 3 cut(s) 86, 610, 621
Hpy166II GTNNAC 4 cut(s) 144, 637, 886, 1027
Hpy188I TCNGA 5 cut(s) 66, 160, 676, 747, 954
Hpy188III TCNNGA 2 cut(s) 911, 995
Hpy8I GTNNAC 4 cut(s) 144, 637, 886, 1027
HpyAV CCTTC 5 cut(s) 155, 388, 534, 742, 1000
HpyCH4III ACNGT 5 cut(s) 74, 403, 429, 874, 960
HpyCH4V TGCA 5 cut(s) 341, 354, 698, 845, 864
HpyF10VI GCNNNNNNNGC 2 cut(s) 304, 854
HpyF3I CTNAG 1 cut(s) 323
Hsp92II CATG 3 cut(s) 142, 151, 358
HspAI GCGC 1 cut(s) 897
Kzo9I GATC 4 cut(s) 106, 422, 458, 822
LmnI GCTCC 3 cut(s) 161, 814, 941
Lsp1109I GCAGC 3 cut(s) 557, 740, 857
MabI ACCWGGT 1 cut(s) 804
MaeI CTAG 4 cut(s) 48, 485, 689, 1019
MaeIII GTNAC 3 cut(s) 616, 800, 901
MalI GATC 4 cut(s) 108, 424, 460, 824
MboI GATC 4 cut(s) 106, 422, 458, 822
MboII GAAGA 2 cut(s) 293, 343
MflI RGATCY 1 cut(s) 458
MluCI AATT 3 cut(s) 235, 377, 622
MmeI TCCRAC 1 cut(s) 794
MseI TTAA 6 cut(s) 96, 233, 264, 384, 492, 564
MspCI CTTAAG 1 cut(s) 263
MspI CCGG 1 cut(s) 827
MspR9I CCNGG 5 cut(s) 414, 480, 591, 806, 827
Mva1269I GAATGC 1 cut(s) 322
MvaI CCWGG 4 cut(s) 414, 480, 591, 806
MwoI GCNNNNNNNGC 2 cut(s) 304, 854
NciI CCSGG 1 cut(s) 827
NdeII GATC 4 cut(s) 106, 422, 458, 822
NlaIII CATG 3 cut(s) 142, 151, 358
NlaIV GGNNCC 3 cut(s) 308, 477, 1016
NmuCI GTSAC 1 cut(s) 616
NspI RCATGY 2 cut(s) 142, 358
PceI AGGCCT 1 cut(s) 439
PciI ACATGT 1 cut(s) 138
PctI GAATGC 1 cut(s) 322
PfeI GAWTC 4 cut(s) 41, 124, 692, 978
PflMI CCANNNNNTGG 2 cut(s) 224, 419
PfoI TCCNGGA 1 cut(s) 412
PkrI GCNGC 3 cut(s) 547, 730, 847
PscI ACATGT 1 cut(s) 138
Psp6I CCWGG 4 cut(s) 412, 478, 589, 804
PspEI GGTNACC 1 cut(s) 800
PspGI CCWGG 4 cut(s) 412, 478, 589, 804
PspN4I GGNNCC 3 cut(s) 308, 477, 1016
PspPI GGNCC 4 cut(s) 306, 476, 660, 1014
PstNI CAGNNNCTG 2 cut(s) 872, 958
PsuI RGATCY 1 cut(s) 458
RsaI GTAC 4 cut(s) 34, 143, 405, 1046
RsaNI GTAC 4 cut(s) 33, 142, 404, 1045
SaqAI TTAA 6 cut(s) 96, 233, 264, 384, 492, 564
SatI GCNGC 3 cut(s) 546, 729, 846
Sau3AI GATC 4 cut(s) 106, 422, 458, 822
Sau96I GGNCC 4 cut(s) 306, 476, 660, 1014
ScrFI CCNGG 5 cut(s) 414, 480, 591, 806, 827
SexAI ACCWGGT 1 cut(s) 804
SinI GGWCC 1 cut(s) 1014
SmlI CTYRAG 2 cut(s) 263, 995
SmoI CTYRAG 2 cut(s) 263, 995
SpeI ACTAGT 1 cut(s) 47
Sse9I AATT 3 cut(s) 235, 377, 622
SseBI AGGCCT 1 cut(s) 439
SspI AATATT 2 cut(s) 231, 507
SspMI CTAG 4 cut(s) 48, 485, 689, 1019
StuI AGGCCT 1 cut(s) 439
StyD4I CCNGG 5 cut(s) 412, 478, 589, 804, 825
StyI CCWWGG 1 cut(s) 663
TaaI ACNGT 5 cut(s) 74, 403, 429, 874, 960
TaqI TCGA 2 cut(s) 44, 132
TasI AATT 3 cut(s) 235, 377, 622
TatI WGTACW 1 cut(s) 141
TfiI GAWTC 4 cut(s) 41, 124, 692, 978
Tru1I TTAA 6 cut(s) 96, 233, 264, 384, 492, 564
Tru9I TTAA 6 cut(s) 96, 233, 264, 384, 492, 564
TscAI CASTG 3 cut(s) 43, 432, 780
TseFI GTSAC 1 cut(s) 616
TseI GCWGC 3 cut(s) 545, 728, 845
Tsp45I GTSAC 1 cut(s) 616
TspDTI ATGAA 5 cut(s) 164, 344, 730, 867, 978
TspGWI ACGGA 1 cut(s) 358
TspRI CASTG 3 cut(s) 43, 432, 780
Van91I CCANNNNNTGG 2 cut(s) 224, 419
Vha464I CTTAAG 1 cut(s) 263
VpaK11BI GGWCC 1 cut(s) 1014
XceI RCATGY 2 cut(s) 142, 358
XmiI GTMKAC 1 cut(s) 636
XspI CTAG 4 cut(s) 48, 485, 689, 1019
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.