Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0002089

Physical Location & Seq

Genomic Coordinates Forward (+)

14105331 .. 14107756

Gene Structure 2426 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g10650.7

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1056 bp

ATGACTTCTGAATCCATAGTTCACAGTCATGAAGCAGACGAAAAACACGTTGATGCCATGAACTGGGATAAACTGGAATTTGGGGTAATTCCAACCGATTACATGTACATTATGATATGTTCCGATGGAGAGAATTTTTCACAAGGCCATCTCGCTCCCTATAGAAAGATTGAGCTCAGCCCATTTGCTGGAATCTTGAATTATGGACAGGGAATATTAGAAGGTCTCAAGGCAATCAGGAAGAAAGATGGTCGCATTCAGCTCTTTCGTCCAGAAGAGAACGCTCTAAGAATGAAGATGGGTGCAGAGAGATTGTGCATGCCATGTCCATCTACTGAGCAATTTCTTGCTGCTTTAAAACAAGCAGTCCTTGCCAACAAGCGTTGGGTACCACCTTCAGGGAAAGGAGTATTGTATATTAGGCCATTGCTCATTGGAAGTGGTCCTGTTCTTGGCTTGGGGTCAGCAACAGAGTACACATTCCTAATATTTGCTACTCCAATTGGTAGTTATCACAAGAGTGGCAGCACCATGAATTTGTACATTGAGAATGAGGTTCGTAGGGCCACTCCTGGTGGAACTGGAGGCATCAAAAGCATCACCAACTATTCACCAATTTTTAGAACAGTACAAAAGGCTAGGGCCAAAGGGTTCACTGACGTCCTCTTTCTGGATGCAGCCACTGGAAAAAATATTGAGGAGTGTTCTTCATCTAATATTTTCATTGTGAAGGATAATGTGATTTTAACTTCACCAACCAATGGAACTGTCCTTCCAGGGATCACAAGGAAAAGCATCATAGAAATTGCTCTCCATCTCAATTACGTGGTGGAGGAACGTGACGTTTCACCAGAGGATGTGTTGGCTGCTGATGAAGTTTTCTGTACTGGGACTGCTGTGGATGTCATTGCCGTTTCTAGCATAACATATCGTGACAAAAGGGTTGAATACAGAAGAGGGAAAGAAACTGTGTTTTGCAAACTGCGTGAAATGCTTACTGAGATTCAAACAGGTTTGATTGAGGACAAAATGGGGTGGACCTTGCTCGTTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00270 ko00280 ko00290 ko00770 ko01100 ko01110 ko01130 ko01210 ko01230 map00270 map00280 map00290 map00770 map01100 map01110 map01130 map01210 map01230

Pfam Domains

Protein Families

Aminotran_4

Protein Analysis

352

Amino Acids

38.88

Weight (kDa)

6.35

Isoelectric Point (pI)

48.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002089)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50090 AT1G50110 AT1G50110
fragaria_vesca	FvH4_2g02760 FvH4_2g02870 FvH4_2g02870
malus_domestica	MD05G1110500.v1.1 MD10G1114000.v1.1
prunus_persica	Prupe.8G155300_v2.0.a1 Prupe.8G155500_v2.0.a1
pyrus_communis	pycom05g10650
rosa_chinensis	RchiOBHm_Chr6g0247221 RchiOBHm_Chr6g0247281 RchiOBHm_Chr6g0247341
rosa_laevigata	RLG00000015207 RLG00000015210
rosa_multiflora	Rmu_sc0000745.1_g000026 Rmu_sc0003226.1_g000006 Rmu_sc0004368.1_g000005 Rmu_sc0004368.1_g000016
rosa_roxburghii	Rroxscaffold_180G00433530 Rroxscaffold_180G00433590 Rroxscaffold_7G00214080 Rroxscaffold_7G00214230
rosa_rugosa	Rorug05G0524400 Rorug05G0524700 Rorug05G0524700 Rorug05G0524800 Rorug05G0524900 Rorug05G0525000 Rorug05G0525100 Rorug05G0525200 Rorug05G0525300
rosa_samantha	Rh6AG038600 Rh6AG039200 Rh6AG039600 Rh6AG040300 Rh6CG034300 Rh6CG034700 Rh6DG031900 Rh6DG032500
rosa_wichuraiana	Rw6G003320 Rw6G003390 Rw6G003460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	663
Acc65I	GGTACC	1 cut(s)	388
AccB1I	GGYRCC	1 cut(s)	388
AccB7I	CCANNNNNTGG	3 cut(s)	63, 188, 761
AclWI	GGATC	1 cut(s)	788
AcsI	RAATTY	3 cut(s)	77, 133, 535
AcuI	CTGAAG	1 cut(s)	381
AcyI	GRCGYC	1 cut(s)	660
AfaI	GTAC	6 cut(s)	107, 390, 476, 542, 630, 886
AfiI	CCNNNNNNNGG	6 cut(s)	63, 188, 398, 452, 670, 761
AflIII	ACRYGT	2 cut(s)	46, 102
AgsI	TTSAA	3 cut(s)	199, 947, 1007
AjnI	CCWGG	2 cut(s)	571, 775
AleI	CACNNNNGTG	1 cut(s)	519
AloI	GAACNNNNNNTCC	2 cut(s)	757, 789
AluBI	AGCT	2 cut(s)	175, 262
AluI	AGCT	2 cut(s)	175, 262
Alw21I	GWGCWC	1 cut(s)	177
Alw26I	GTCTC	1 cut(s)	230
AlwI	GGATC	1 cut(s)	788
AlwNI	CAGNNNCTG	1 cut(s)	683
AoxI	GGCC	4 cut(s)	145, 422, 564, 642
ApeKI	GCWGC	4 cut(s)	350, 525, 677, 866
ApoI	RAATTY	3 cut(s)	77, 133, 535
Asp718I	GGTACC	1 cut(s)	388
AspS9I	GGNCC	4 cut(s)	443, 564, 642, 1038
AsuHPI	GGTGA	4 cut(s)	592, 603, 744, 840
AvaII	GGWCC	2 cut(s)	443, 1038
BanI	GGYRCC	1 cut(s)	388
BanII	GRGCYC	1 cut(s)	177
Bbv12I	GWGCWC	1 cut(s)	177
BbvI	GCAGC	4 cut(s)	337, 537, 689, 853
BccI	CCATC	6 cut(s)	119, 156, 242, 292, 337, 822
BceAI	ACGGC	1 cut(s)	896
BciT130I	CCWGG	2 cut(s)	573, 777
BcoDI	GTCTC	1 cut(s)	230
BfaI	CTAG	2 cut(s)	639, 918
BfmI	CTRYAG	1 cut(s)	160
BisI	GCNGC	4 cut(s)	351, 526, 678, 867
BlpI	GCTNAGC	1 cut(s)	176
BlsI	GCNGC	4 cut(s)	352, 527, 679, 868
Bme1390I	CCNGG	2 cut(s)	573, 777
Bme18I	GGWCC	2 cut(s)	443, 1038
BmgT120I	GGNCC	4 cut(s)	443, 564, 642, 1038
BmiI	GGNNCC	1 cut(s)	390
BmrFI	CCNGG	2 cut(s)	573, 777
BmrI	ACTGGG	2 cut(s)	73, 897
BmsI	GCATC	5 cut(s)	43, 597, 606, 664, 804
BmuI	ACTGGG	2 cut(s)	73, 897
BpmI	CTGGAG	1 cut(s)	603
Bpu1102I	GCTNAGC	1 cut(s)	176
BpuEI	CTTGAG	1 cut(s)	212
BsaAI	YACGTR	1 cut(s)	826
BsaHI	GRCGYC	1 cut(s)	660
BsaI	GGTCTC	1 cut(s)	230
BsaJI	CCNNGG	1 cut(s)	776
Bsc4I	CCNNNNNNNGG	6 cut(s)	63, 188, 398, 452, 670, 761
Bse1I	ACTGG	5 cut(s)	68, 78, 586, 688, 892
Bse3DI	GCAATG	2 cut(s)	425, 906
BseBI	CCWGG	2 cut(s)	573, 777
BseDI	CCNNGG	1 cut(s)	776
BseGI	GGATG	3 cut(s)	679, 862, 907
BseLI	CCNNNNNNNGG	6 cut(s)	63, 188, 398, 452, 670, 761
BseMI	GCAATG	2 cut(s)	425, 906
BseMII	CTCAG	3 cut(s)	190, 327, 990
BseNI	ACTGG	5 cut(s)	68, 78, 586, 688, 892
BseRI	GAGGAG	1 cut(s)	713
BseXI	GCAGC	4 cut(s)	337, 537, 689, 853
BsgI	GTGCAG	1 cut(s)	324
BshFI	GGCC	4 cut(s)	147, 424, 566, 644
BshNI	GGYRCC	1 cut(s)	388
BsiHKAI	GWGCWC	1 cut(s)	177
BslFI	GGGAC	1 cut(s)	904
BslI	CCNNNNNNNGG	6 cut(s)	63, 188, 398, 452, 670, 761
BsmAI	GTCTC	1 cut(s)	230
BsmFI	GGGAC	1 cut(s)	904
BsmI	GAATGC	1 cut(s)	255
BsnI	GGCC	4 cut(s)	147, 424, 566, 644
Bso31I	GGTCTC	1 cut(s)	230
Bsp1286I	GDGCHC	1 cut(s)	177
Bsp1407I	TGTACA	2 cut(s)	105, 540
Bsp143I	GATC	1 cut(s)	780
Bsp1720I	GCTNAGC	1 cut(s)	176
BspANI	GGCC	4 cut(s)	147, 424, 566, 644
BspCNI	CTCAG	3 cut(s)	189, 328, 991
BspHI	TCATGA	1 cut(s)	28
BspLI	GGNNCC	1 cut(s)	390
BspPI	GGATC	1 cut(s)	788
BspT107I	GGYRCC	1 cut(s)	388
BspTNI	GGTCTC	1 cut(s)	230
BsrDI	GCAATG	2 cut(s)	425, 906
BsrGI	TGTACA	2 cut(s)	105, 540
BsrI	ACTGG	5 cut(s)	68, 78, 586, 688, 892
BssECI	CCNNGG	1 cut(s)	776
BssMI	GATC	1 cut(s)	780
BssNI	GRCGYC	1 cut(s)	660
Bst2UI	CCWGG	2 cut(s)	573, 777
Bst4CI	ACNGT	4 cut(s)	26, 628, 769, 970
Bst6I	CTCTTC	2 cut(s)	270, 949
BstACI	GRCGYC	1 cut(s)	660
BstAPI	GCANNNNNTGC	1 cut(s)	371
BstAUI	TGTACA	2 cut(s)	105, 540
BstBAI	YACGTR	1 cut(s)	826
BstC8I	GCNNGC	1 cut(s)	320
BstDEI	CTNAG	4 cut(s)	176, 287, 336, 999
BstF5I	GGATG	3 cut(s)	679, 862, 907
BstKTI	GATC	1 cut(s)	783
BstMAI	GTCTC	1 cut(s)	230
BstMBI	GATC	1 cut(s)	780
BstMWI	GCNNNNNNNGC	3 cut(s)	371, 594, 991
BstNI	CCWGG	2 cut(s)	573, 777
BstNSI	RCATGY	2 cut(s)	106, 322
BstSCI	CCNGG	2 cut(s)	571, 775
BstSFI	CTRYAG	1 cut(s)	160
BstV1I	GCAGC	4 cut(s)	337, 537, 689, 853
BsuRI	GGCC	4 cut(s)	147, 424, 566, 644
BtsCI	GGATG	3 cut(s)	679, 862, 907
BtsIMutI	CAGTG	2 cut(s)	654, 681
Cac8I	GCNNGC	1 cut(s)	320
CaiI	CAGNNNCTG	1 cut(s)	683
CciI	TCATGA	1 cut(s)	28
Cfr13I	GGNCC	4 cut(s)	443, 564, 642, 1038
Csp6I	GTAC	6 cut(s)	106, 389, 475, 541, 629, 885
CviAII	CATG	6 cut(s)	29, 58, 103, 319, 324, 532
CviQI	GTAC	6 cut(s)	106, 389, 475, 541, 629, 885
DdeI	CTNAG	4 cut(s)	176, 287, 336, 999
DpnI	GATC	1 cut(s)	782
DpnII	GATC	1 cut(s)	780
DraI	TTTAAA	1 cut(s)	357
Eam1104I	CTCTTC	2 cut(s)	270, 949
EarI	CTCTTC	2 cut(s)	270, 949
Ecl136II	GAGCTC	1 cut(s)	175
Eco24I	GRGCYC	1 cut(s)	177
Eco31I	GGTCTC	1 cut(s)	230
Eco47I	GGWCC	2 cut(s)	443, 1038
Eco53kI	GAGCTC	1 cut(s)	175
Eco57I	CTGAAG	1 cut(s)	381
EcoICRI	GAGCTC	1 cut(s)	175
EcoRII	CCWGG	2 cut(s)	571, 775
EcoT38I	GRGCYC	1 cut(s)	177
FaeI	CATG	6 cut(s)	32, 61, 106, 322, 327, 535
FalI	AAGNNNNNCTT	2 cut(s)	354, 386
FaqI	GGGAC	1 cut(s)	904
FatI	CATG	6 cut(s)	28, 57, 102, 318, 323, 531
Fnu4HI	GCNGC	4 cut(s)	351, 526, 678, 867
FokI	GGATG	3 cut(s)	686, 869, 914
FriOI	GRGCYC	1 cut(s)	177
Fsp4HI	GCNGC	4 cut(s)	351, 526, 678, 867
FspBI	CTAG	2 cut(s)	639, 918
GluI	GCNGC	4 cut(s)	351, 526, 678, 867
GsuI	CTGGAG	1 cut(s)	603
HaeIII	GGCC	4 cut(s)	147, 424, 566, 644
Hin1I	GRCGYC	1 cut(s)	660
Hin1II	CATG	6 cut(s)	32, 61, 106, 322, 327, 535
HinfI	GANTC	3 cut(s)	11, 192, 1003
HphI	GGTGA	4 cut(s)	592, 603, 744, 840
Hpy166II	GTNNAC	4 cut(s)	22, 477, 654, 1038
Hpy188I	TCNGA	2 cut(s)	10, 124
Hpy188III	TCNNGA	6 cut(s)	29, 196, 238, 272, 671, 932
Hpy8I	GTNNAC	4 cut(s)	22, 477, 654, 1038
HpyAV	CCTTC	4 cut(s)	215, 405, 724, 782
HpyCH4III	ACNGT	4 cut(s)	26, 628, 769, 970
HpyCH4IV	ACGT	5 cut(s)	48, 660, 825, 838, 843
HpyCH4V	TGCA	4 cut(s)	305, 318, 677, 978
HpyF10VI	GCNNNNNNNGC	3 cut(s)	371, 594, 991
HpyF3I	CTNAG	4 cut(s)	176, 287, 336, 999
HpySE526I	ACGT	5 cut(s)	48, 660, 825, 838, 843
Hsp92I	GRCGYC	1 cut(s)	660
Hsp92II	CATG	6 cut(s)	32, 61, 106, 322, 327, 535
KpnI	GGTACC	1 cut(s)	392
Kzo9I	GATC	1 cut(s)	780
LmnI	GCTCC	1 cut(s)	160
Lsp1109I	GCAGC	4 cut(s)	337, 537, 689, 853
LweI	GCATC	5 cut(s)	43, 597, 606, 664, 804
MaeI	CTAG	2 cut(s)	639, 918
MaeII	ACGT	5 cut(s)	48, 660, 825, 838, 843
MaeIII	GTNAC	2 cut(s)	839, 932
MalI	GATC	1 cut(s)	782
MboI	GATC	1 cut(s)	780
MboII	GAAGA	5 cut(s)	253, 287, 307, 699, 966
MfeI	CAATTG	1 cut(s)	501
MhlI	GDGCHC	1 cut(s)	177
MmeI	TCCRAC	1 cut(s)	116
MnlI	CCTC	8 cut(s)	547, 578, 674, 691, 826, 847, 950, 1015
MseI	TTAA	2 cut(s)	356, 746
MslI	CAYNNNNRTG	3 cut(s)	27, 51, 519
MspR9I	CCNGG	2 cut(s)	573, 777
MunI	CAATTG	1 cut(s)	501
Mva1269I	GAATGC	1 cut(s)	255
MvaI	CCWGG	2 cut(s)	573, 777
MwoI	GCNNNNNNNGC	3 cut(s)	371, 594, 991
NdeII	GATC	1 cut(s)	780
NlaIII	CATG	6 cut(s)	32, 61, 106, 322, 327, 535
NlaIV	GGNNCC	1 cut(s)	390
NmuCI	GTSAC	2 cut(s)	839, 932
NspI	RCATGY	2 cut(s)	106, 322
OliI	CACNNNNGTG	1 cut(s)	519
PaeI	GCATGC	1 cut(s)	322
PagI	TCATGA	1 cut(s)	28
PciI	ACATGT	1 cut(s)	102
PcsI	WCGNNNNNNNCGW	1 cut(s)	45
PctI	GAATGC	1 cut(s)	255
PfeI	GAWTC	3 cut(s)	11, 192, 1003
PflMI	CCANNNNNTGG	3 cut(s)	63, 188, 761
PkrI	GCNGC	4 cut(s)	352, 527, 679, 868
Ppu21I	YACGTR	1 cut(s)	826
PscI	ACATGT	1 cut(s)	102
Psp124BI	GAGCTC	1 cut(s)	177
Psp6I	CCWGG	2 cut(s)	571, 775
PspGI	CCWGG	2 cut(s)	571, 775
PspN4I	GGNNCC	1 cut(s)	390
PspPI	GGNCC	4 cut(s)	443, 564, 642, 1038
PstNI	CAGNNNCTG	1 cut(s)	683
RsaI	GTAC	6 cut(s)	107, 390, 476, 542, 630, 886
RsaNI	GTAC	6 cut(s)	106, 389, 475, 541, 629, 885
RseI	CAYNNNNRTG	3 cut(s)	27, 51, 519
SacI	GAGCTC	1 cut(s)	177
SaqAI	TTAA	2 cut(s)	356, 746
SatI	GCNGC	4 cut(s)	351, 526, 678, 867
Sau3AI	GATC	1 cut(s)	780
Sau96I	GGNCC	4 cut(s)	443, 564, 642, 1038
ScrFI	CCNGG	2 cut(s)	573, 777
SduI	GDGCHC	1 cut(s)	177
SfaNI	GCATC	5 cut(s)	43, 597, 606, 664, 804
SfcI	CTRYAG	1 cut(s)	160
SinI	GGWCC	2 cut(s)	443, 1038
SmiMI	CAYNNNNRTG	3 cut(s)	27, 51, 519
SmlI	CTYRAG	1 cut(s)	227
SmoI	CTYRAG	1 cut(s)	227
SphI	GCATGC	1 cut(s)	322
SspI	AATATT	4 cut(s)	216, 489, 694, 718
SspMI	CTAG	2 cut(s)	639, 918
SstI	GAGCTC	1 cut(s)	177
StyD4I	CCNGG	2 cut(s)	571, 775
TaaI	ACNGT	4 cut(s)	26, 628, 769, 970
TaiI	ACGT	5 cut(s)	51, 663, 828, 841, 846
TatI	WGTACW	5 cut(s)	105, 474, 540, 628, 884
TfiI	GAWTC	3 cut(s)	11, 192, 1003
Tru1I	TTAA	2 cut(s)	356, 746
Tru9I	TTAA	2 cut(s)	356, 746
TscAI	CASTG	2 cut(s)	661, 688
TseFI	GTSAC	2 cut(s)	839, 932
TseI	GCWGC	4 cut(s)	350, 525, 677, 866
Tsp45I	GTSAC	2 cut(s)	839, 932
TspDTI	ATGAA	7 cut(s)	45, 74, 308, 548, 699, 712, 888
TspRI	CASTG	2 cut(s)	661, 688
Van91I	CCANNNNNTGG	3 cut(s)	63, 188, 761
VpaK11BI	GGWCC	2 cut(s)	443, 1038
XapI	RAATTY	3 cut(s)	77, 133, 535
XceI	RCATGY	2 cut(s)	106, 322
XspI	CTAG	2 cut(s)	639, 918
ZraI	GACGTC	1 cut(s)	661

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.