Rw6G003460

Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0002089
Physical Location & Seq
Reverse (-)
5462925 .. 5467057
4133 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G003460.1

Sequence Viewer

Length: 1104 bp
ATGGTCACTTTTTGGTCTCATATCCACATCTCAACCGTTCAGTTTTTAGAGAGAGAGAGAGAGAGAGAACTGCAACCAAAACTTGGGTGTGCATGCAATTGCAATTTGCAAGTTCTGAAAAACGGTGAAATGTATGCTGATGGCATTAACTGGGATGATCTTGGGTTTGGACTGATTCCAATCGATTACATGTACACCATGAAATGCTCTGACGGAGAAAACTTTTCACAAGGACATCTCTCTCCCTTTGGAAAGATTGAGCTTTGCCCATCTGCTGGAATATTGAATTATGGACAGGTCTTAAGGCGACCAGAACAGAAGATATCTGGTCGTATTATGCTGTTTCGGCCCCAAGAGAATGCTCTAAGAATGAAGATGGGTGCAGAGAGAATGTGCATGCCATCTCCATCCGTTGAGCAATTTGTTGATGCTGTGAAGCAAACAGTCTTCGCCAACAAGCGTTGGGTACCACCTCCAGGAAAAGGATCACTGTATATTAGGCCTTTGCTCGTGGGGAGTGGATCTAATCTGGGCTTGGGCCCGGGACTGGAGTATACATTCCTAATATTTGCTTCTCCGGTTGGTAATTATCACAAGGGAAGGGCAGCCCTCAATTTGTATGTTGAGCATAAAATCCACAGAGCTACTCCTGGTGGAACTGGAGGTGTCAAGTCCGTCACCAATTACTCACCTGTTTACCAAACACAACAGCAAGCAAGGGCCAAGGGGTTCTCTGATGTCTTATTCCTAGATTCTGCTACTGGTAAAAACATTGAGGAGATTGTAGCAGCTAACATTTTCATTCTGAAGGGTAATGTCATTTCAACACCAACACTGAAACATGGAACTATCCTCCCTGGAGTAACCCGTAAAAGCATCATTGACATTGCCCTTGATTTTGGTTACCAGGTGGAGGAGCGTGTGATCCCAGTGGAGGATTTACTTGCAGCCAATGAAGCTTTCTGCACAGGAACTGCCGTGGTTGTCAACCCTATTGGCGCTGTAACTTATCAAGACAAGAGGCAAAAACTGTATGAAACGCTAACAGGAATCCAAACAGGCCGTCTTGAGGACAAGAAGGGATGGACCCTAGAGGTCAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00270 ko00280 ko00290 ko00770 ko01100 ko01110 ko01130 ko01210 ko01230 map00270 map00280 map00290 map00770 map01100 map01110 map01130 map01210 map01230
Pfam Domains
Protein Families
Aminotran_4

Protein Analysis

367

Amino Acids

40.6

Weight (kDa)

8.56

Isoelectric Point (pI)

45.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aminotran_4 PF01063 114 - 333 3.6e-29 Amino-transferase class IV
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 466
AccB1I GGYRCC 1 cut(s) 466
AccB7I CCANNNNNTGG 2 cut(s) 83, 275
AccI GTMKAC 1 cut(s) 554
AclWI GGATC 3 cut(s) 493, 529, 919
AcuI CTGAAG 1 cut(s) 827
AfaI GTAC 2 cut(s) 194, 468
AfiI CCNNNNNNNGG 8 cut(s) 83, 275, 476, 482, 547, 913, 934, 1069
AflII CTTAAG 1 cut(s) 301
AflIII ACRYGT 1 cut(s) 189
AgsI TTSAA 2 cut(s) 286, 825
AjnI CCWGG 4 cut(s) 475, 649, 856, 906
AjuI GAANNNNNNNTTGG 2 cut(s) 944, 976
AluBI AGCT 4 cut(s) 262, 644, 791, 959
AluI AGCT 4 cut(s) 262, 644, 791, 959
Alw26I GTCTC 1 cut(s) 21
AlwI GGATC 3 cut(s) 493, 529, 919
AlwNI CAGNNNCTG 1 cut(s) 974
Ama87I CYCGRG 1 cut(s) 541
AoxI GGCC 5 cut(s) 347, 500, 538, 720, 1060
ApaI GGGCCC 1 cut(s) 542
ApeKI GCWGC 3 cut(s) 605, 788, 947
ArsI GACNNNNNNTTYG 2 cut(s) 1048, 1080
Asp718I GGTACC 1 cut(s) 466
AspLEI GCGC 1 cut(s) 1001
AspS9I GGNCC 5 cut(s) 348, 538, 539, 720, 1086
AsuC2I CCSGG 2 cut(s) 542, 543
AsuHPI GGTGA 3 cut(s) 137, 670, 681
AvaI CYCGRG 1 cut(s) 541
AvaII GGWCC 1 cut(s) 1086
BaeGI GKGCMC 1 cut(s) 542
BanI GGYRCC 1 cut(s) 466
BanII GRGCYC 1 cut(s) 542
BauI CACGAG 1 cut(s) 509
BbsI GAAGAC 1 cut(s) 439
BbvI GCAGC 3 cut(s) 617, 800, 959
BccI CCATC 6 cut(s) 134, 277, 370, 409, 415, 1077
BceAI ACGGC 2 cut(s) 962, 1047
BciT130I CCWGG 4 cut(s) 477, 651, 858, 908
BcnI CCSGG 2 cut(s) 542, 543
BcoDI GTCTC 1 cut(s) 21
BfaI CTAG 2 cut(s) 749, 1091
BfoI RGCGCY 1 cut(s) 1002
BfrI CTTAAG 1 cut(s) 301
BisI GCNGC 3 cut(s) 606, 789, 948
BlsI GCNGC 3 cut(s) 607, 790, 949
Bme1390I CCNGG 6 cut(s) 477, 542, 543, 651, 858, 908
Bme18I GGWCC 1 cut(s) 1086
BmeT110I CYCGRG 1 cut(s) 541
BmgT120I GGNCC 5 cut(s) 348, 538, 539, 720, 1086
BmiI GGNNCC 4 cut(s) 350, 468, 540, 1088
BmrFI CCNGG 6 cut(s) 477, 542, 543, 651, 858, 908
BmrI ACTGGG 2 cut(s) 160, 923
BmsI GCATC 2 cut(s) 418, 885
BmuI ACTGGG 2 cut(s) 160, 923
BpiI GAAGAC 1 cut(s) 439
BpmI CTGGAG 4 cut(s) 459, 569, 681, 879
BpuEI CTTGAG 1 cut(s) 1088
BpuMI CCSGG 2 cut(s) 542, 543
Bsa29I ATCGAT 1 cut(s) 183
BsaBI GATNNNNATC 1 cut(s) 179
BsaI GGTCTC 1 cut(s) 21
BsaJI CCNNGG 4 cut(s) 541, 723, 856, 978
BsaWI WCCGGW 1 cut(s) 577
Bsc4I CCNNNNNNNGG 8 cut(s) 83, 275, 476, 482, 547, 913, 934, 1069
Bse1I ACTGG 5 cut(s) 155, 552, 664, 766, 929
Bse3DI GCAATG 1 cut(s) 885
Bse8I GATNNNNATC 1 cut(s) 179
BseBI CCWGG 4 cut(s) 477, 651, 858, 908
BseCI ATCGAT 1 cut(s) 183
BseDI CCNNGG 4 cut(s) 541, 723, 856, 978
BseGI GGATG 3 cut(s) 160, 407, 1088
BseJI GATNNNNATC 1 cut(s) 179
BseLI CCNNNNNNNGG 8 cut(s) 83, 275, 476, 482, 547, 913, 934, 1069
BseMI GCAATG 1 cut(s) 885
BseNI ACTGG 5 cut(s) 155, 552, 664, 766, 929
BseRI GAGGAG 2 cut(s) 791, 929
BseSI GKGCMC 1 cut(s) 542
BseXI GCAGC 3 cut(s) 617, 800, 959
BsgI GTGCAG 2 cut(s) 402, 949
BshFI GGCC 5 cut(s) 349, 502, 540, 722, 1062
BshNI GGYRCC 1 cut(s) 466
BshVI ATCGAT 1 cut(s) 183
BsiHKCI CYCGRG 1 cut(s) 541
BsiSI CCGG 2 cut(s) 542, 578
BslFI GGGAC 1 cut(s) 558
BslI CCNNNNNNNGG 8 cut(s) 83, 275, 476, 482, 547, 913, 934, 1069
BsmAI GTCTC 1 cut(s) 21
BsmFI GGGAC 1 cut(s) 558
BsmI GAATGC 1 cut(s) 364
BsnI GGCC 5 cut(s) 349, 502, 540, 722, 1062
Bso31I GGTCTC 1 cut(s) 21
BsoBI CYCGRG 1 cut(s) 541
Bsp120I GGGCCC 1 cut(s) 538
Bsp1286I GDGCHC 1 cut(s) 542
Bsp1407I TGTACA 1 cut(s) 192
Bsp143I GATC 4 cut(s) 157, 485, 521, 924
BspANI GGCC 5 cut(s) 349, 502, 540, 722, 1062
BspDI ATCGAT 1 cut(s) 183
BspLI GGNNCC 4 cut(s) 350, 468, 540, 1088
BspPI GGATC 3 cut(s) 493, 529, 919
BspT107I GGYRCC 1 cut(s) 466
BspTI CTTAAG 1 cut(s) 301
BspTNI GGTCTC 1 cut(s) 21
BsrDI GCAATG 1 cut(s) 885
BsrGI TGTACA 1 cut(s) 192
BsrI ACTGG 5 cut(s) 155, 552, 664, 766, 929
BssECI CCNNGG 4 cut(s) 541, 723, 856, 978
BssMI GATC 4 cut(s) 157, 485, 521, 924
BssNAI GTATAC 1 cut(s) 555
BssSI CACGAG 1 cut(s) 509
BssT1I CCWWGG 1 cut(s) 723
Bst1107I GTATAC 1 cut(s) 555
Bst2BI CACGAG 1 cut(s) 509
Bst2UI CCWGG 4 cut(s) 477, 651, 858, 908
Bst4CI ACNGT 5 cut(s) 37, 125, 445, 492, 1032
BstAFI CTTAAG 1 cut(s) 301
BstAUI TGTACA 1 cut(s) 192
BstC8I GCNNGC 3 cut(s) 94, 398, 714
BstDEI CTNAG 1 cut(s) 365
BstDSI CCRYGG 1 cut(s) 978
BstEII GGTNACC 1 cut(s) 902
BstF5I GGATG 3 cut(s) 160, 407, 1088
BstH2I RGCGCY 1 cut(s) 1002
BstHHI GCGC 1 cut(s) 1001
BstKTI GATC 4 cut(s) 160, 488, 524, 927
BstMAI GTCTC 1 cut(s) 21
BstMBI GATC 4 cut(s) 157, 485, 521, 924
BstMWI GCNNNNNNNGC 2 cut(s) 346, 956
BstNI CCWGG 4 cut(s) 477, 651, 858, 908
BstNSI RCATGY 3 cut(s) 96, 193, 400
BstPI GGTNACC 1 cut(s) 902
BstSCI CCNGG 6 cut(s) 475, 540, 541, 649, 856, 906
BstSLI GKGCMC 1 cut(s) 542
BstV1I GCAGC 3 cut(s) 617, 800, 959
BstV2I GAAGAC 1 cut(s) 439
BstX2I RGATCY 1 cut(s) 521
BstYI RGATCY 1 cut(s) 521
BstZ17I GTATAC 1 cut(s) 555
Bsu15I ATCGAT 1 cut(s) 183
BsuRI GGCC 5 cut(s) 349, 502, 540, 722, 1062
BsuTUI ATCGAT 1 cut(s) 183
BtgI CCRYGG 1 cut(s) 978
BtsCI GGATG 3 cut(s) 160, 407, 1088
BtsIMutI CAGTG 3 cut(s) 488, 833, 936
Cac8I GCNNGC 3 cut(s) 94, 398, 714
CaiI CAGNNNCTG 1 cut(s) 974
CfoI GCGC 1 cut(s) 1001
Cfr13I GGNCC 5 cut(s) 348, 538, 539, 720, 1086
Cfr9I CCCGGG 1 cut(s) 541
ClaI ATCGAT 1 cut(s) 183
CsiI ACCWGGT 1 cut(s) 906
Csp6I GTAC 2 cut(s) 193, 467
CviAII CATG 5 cut(s) 93, 190, 199, 397, 842
CviQI GTAC 2 cut(s) 193, 467
DdeI CTNAG 1 cut(s) 365
DpnI GATC 4 cut(s) 159, 487, 523, 926
DpnII GATC 4 cut(s) 157, 485, 521, 924
Eco130I CCWWGG 1 cut(s) 723
Eco147I AGGCCT 1 cut(s) 502
Eco24I GRGCYC 1 cut(s) 542
Eco31I GGTCTC 1 cut(s) 21
Eco32I GATATC 1 cut(s) 324
Eco47I GGWCC 1 cut(s) 1086
Eco57I CTGAAG 1 cut(s) 827
Eco88I CYCGRG 1 cut(s) 541
Eco91I GGTNACC 1 cut(s) 902
EcoO65I GGTNACC 1 cut(s) 902
EcoRII CCWGG 4 cut(s) 475, 649, 856, 906
EcoRV GATATC 1 cut(s) 324
EcoT14I CCWWGG 1 cut(s) 723
EcoT38I GRGCYC 1 cut(s) 542
ErhI CCWWGG 1 cut(s) 723
FaeI CATG 5 cut(s) 96, 193, 202, 400, 845
FaqI GGGAC 1 cut(s) 558
FatI CATG 5 cut(s) 92, 189, 198, 396, 841
FblI GTMKAC 1 cut(s) 554
Fnu4HI GCNGC 3 cut(s) 606, 789, 948
FokI GGATG 3 cut(s) 167, 394, 1095
FriOI GRGCYC 1 cut(s) 542
Fsp4HI GCNGC 3 cut(s) 606, 789, 948
FspBI CTAG 2 cut(s) 749, 1091
GlaI GCGC 1 cut(s) 1000
GluI GCNGC 3 cut(s) 606, 789, 948
GsuI CTGGAG 4 cut(s) 459, 569, 681, 879
HaeII RGCGCY 1 cut(s) 1002
HaeIII GGCC 5 cut(s) 349, 502, 540, 722, 1062
HapII CCGG 2 cut(s) 542, 578
HhaI GCGC 1 cut(s) 1001
Hin1II CATG 5 cut(s) 96, 193, 202, 400, 845
Hin6I GCGC 1 cut(s) 999
HinP1I GCGC 1 cut(s) 999
HincII GTYRAC 2 cut(s) 988, 1099
HindII GTYRAC 2 cut(s) 988, 1099
HindIII AAGCTT 1 cut(s) 957
HinfI GANTC 3 cut(s) 175, 752, 1050
HpaII CCGG 2 cut(s) 542, 578
HphI GGTGA 3 cut(s) 137, 670, 681
Hpy166II GTNNAC 5 cut(s) 195, 555, 697, 988, 1099
Hpy188I TCNGA 4 cut(s) 117, 211, 736, 807
Hpy188III TCNNGA 2 cut(s) 1013, 1067
Hpy8I GTNNAC 5 cut(s) 195, 555, 697, 988, 1099
HpyAV CCTTC 3 cut(s) 594, 802, 1072
HpyCH4III ACNGT 5 cut(s) 37, 125, 445, 492, 1032
HpyCH4V TGCA 9 cut(s) 73, 92, 96, 102, 109, 383, 396, 947, 966
HpyF10VI GCNNNNNNNGC 2 cut(s) 346, 956
HpyF3I CTNAG 1 cut(s) 365
Hsp92II CATG 5 cut(s) 96, 193, 202, 400, 845
HspAI GCGC 1 cut(s) 999
KpnI GGTACC 1 cut(s) 470
Kzo9I GATC 4 cut(s) 157, 485, 521, 924
LmnI GCTCC 1 cut(s) 916
Lsp1109I GCAGC 3 cut(s) 617, 800, 959
LweI GCATC 2 cut(s) 418, 885
MabI ACCWGGT 1 cut(s) 906
MaeI CTAG 2 cut(s) 749, 1091
MaeIII GTNAC 5 cut(s) 4, 676, 862, 902, 1003
MalI GATC 4 cut(s) 159, 487, 523, 926
MboI GATC 4 cut(s) 157, 485, 521, 924
MboII GAAGA 3 cut(s) 331, 385, 439
MfeI CAATTG 1 cut(s) 97
MflI RGATCY 1 cut(s) 521
MhlI GDGCHC 1 cut(s) 542
MluCI AATT 7 cut(s) 97, 103, 286, 419, 586, 613, 682
MseI TTAA 2 cut(s) 147, 302
MspCI CTTAAG 1 cut(s) 301
MspI CCGG 2 cut(s) 542, 578
MspR9I CCNGG 6 cut(s) 477, 542, 543, 651, 858, 908
MunI CAATTG 1 cut(s) 97
Mva1269I GAATGC 1 cut(s) 364
MvaI CCWGG 4 cut(s) 477, 651, 858, 908
MwoI GCNNNNNNNGC 2 cut(s) 346, 956
NciI CCSGG 2 cut(s) 542, 543
NdeII GATC 4 cut(s) 157, 485, 521, 924
NlaIII CATG 5 cut(s) 96, 193, 202, 400, 845
NlaIV GGNNCC 4 cut(s) 350, 468, 540, 1088
NmuCI GTSAC 2 cut(s) 4, 676
NspI RCATGY 3 cut(s) 96, 193, 400
PaeI GCATGC 2 cut(s) 96, 400
PceI AGGCCT 1 cut(s) 502
PciI ACATGT 1 cut(s) 189
PctI GAATGC 1 cut(s) 364
PfeI GAWTC 3 cut(s) 175, 752, 1050
PflMI CCANNNNNTGG 2 cut(s) 83, 275
PfoI TCCNGGA 1 cut(s) 475
PkrI GCNGC 3 cut(s) 607, 790, 949
PscI ACATGT 1 cut(s) 189
Psp6I CCWGG 4 cut(s) 475, 649, 856, 906
PspEI GGTNACC 1 cut(s) 902
PspGI CCWGG 4 cut(s) 475, 649, 856, 906
PspN4I GGNNCC 4 cut(s) 350, 468, 540, 1088
PspOMI GGGCCC 1 cut(s) 538
PspPI GGNCC 5 cut(s) 348, 538, 539, 720, 1086
PstNI CAGNNNCTG 1 cut(s) 974
PsuI RGATCY 1 cut(s) 521
RsaI GTAC 2 cut(s) 194, 468
RsaNI GTAC 2 cut(s) 193, 467
SaqAI TTAA 2 cut(s) 147, 302
SatI GCNGC 3 cut(s) 606, 789, 948
Sau3AI GATC 4 cut(s) 157, 485, 521, 924
Sau96I GGNCC 5 cut(s) 348, 538, 539, 720, 1086
ScrFI CCNGG 6 cut(s) 477, 542, 543, 651, 858, 908
SduI GDGCHC 1 cut(s) 542
SexAI ACCWGGT 1 cut(s) 906
SfaNI GCATC 2 cut(s) 418, 885
SinI GGWCC 1 cut(s) 1086
SmaI CCCGGG 1 cut(s) 543
SmlI CTYRAG 2 cut(s) 301, 1067
SmoI CTYRAG 2 cut(s) 301, 1067
SphI GCATGC 2 cut(s) 96, 400
Sse9I AATT 7 cut(s) 97, 103, 286, 419, 586, 613, 682
SseBI AGGCCT 1 cut(s) 502
SspI AATATT 2 cut(s) 282, 567
SspMI CTAG 2 cut(s) 749, 1091
StuI AGGCCT 1 cut(s) 502
StyD4I CCNGG 6 cut(s) 475, 540, 541, 649, 856, 906
StyI CCWWGG 1 cut(s) 723
TaaI ACNGT 5 cut(s) 37, 125, 445, 492, 1032
TaqI TCGA 1 cut(s) 183
TasI AATT 7 cut(s) 97, 103, 286, 419, 586, 613, 682
TatI WGTACW 1 cut(s) 192
TfiI GAWTC 3 cut(s) 175, 752, 1050
Tru1I TTAA 2 cut(s) 147, 302
Tru9I TTAA 2 cut(s) 147, 302
TscAI CASTG 3 cut(s) 495, 840, 936
TseFI GTSAC 2 cut(s) 4, 676
TseI GCWGC 3 cut(s) 605, 788, 947
Tsp45I GTSAC 2 cut(s) 4, 676
TspDTI ATGAA 5 cut(s) 215, 386, 790, 969, 1050
TspGWI ACGGA 3 cut(s) 228, 400, 664
TspMI CCCGGG 1 cut(s) 541
TspRI CASTG 3 cut(s) 495, 840, 936
Van91I CCANNNNNTGG 2 cut(s) 83, 275
Vha464I CTTAAG 1 cut(s) 301
VpaK11BI GGWCC 1 cut(s) 1086
XceI RCATGY 3 cut(s) 96, 193, 400
XmaI CCCGGG 1 cut(s) 541
XmiI GTMKAC 1 cut(s) 554
XspI CTAG 2 cut(s) 749, 1091
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.