Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0003034

Physical Location & Seq

Genomic Coordinates Forward (+)

54615188 .. 54617423

Gene Structure 2236 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000034791

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGGAGCCAGCCGGGTCCTGTGACTACTCCGATGGAACCTGGATCTACGACCCGAATGCGTCTCCCAAGTACGACAACACCTACAAAGAGATCTTCAAGGGCTGGAATTGCATTTCCAGCAACAATCCAACGGCCGCGAACTCATCAAGTGGAGGTGGAAGCCTAAGCAATGTGATCTCTTGCCGTTCAATCCCGCTAGGGTTTATTGGTGATTCCTTAAACCGGAATATGTTTGTTTCGCTATTCTGTTCGCTCAAACGAGTGTCGAGTGAAGTAAAGAAGTGGCGGCCAGTTGGTGCTGATCGCGGGTTCACATTTCTTCAATATAATGTTCCGTTTGCGTATCATCGGACAAATCTTTTGGCTCGTTACAGTAGGTGGTGGGCTCCTGCAAAGTTTGACCCTATGAAGTTGCCTTTGCTTTTCTTTGAAAATGGTCAGCCTGTGGTTCCTCCAACACTTCGTGACGCTGGCCTTGATATGGCACGACTCGTGAATCAACACCTTTACAAGGCCCTTGAGGGGTCAAGTTTCCATATTTTGGACATAACTCACCTGAGTGAGTTCAGAGCAAATGCCCATCCATCAGCAGCTGGTGGGAAGAAGCACGATGATTGTATGCATTGGTGCTTGCCAGGAATAACAGATGCTTGGAATGACTTGTTCATAGCACAGTTAAATAATGTCAGATTTAGAACAAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0008150 GO:0008374 GO:0009987 GO:0012505 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071554

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

235

Amino Acids

26.3

Weight (kDa)

8.88

Isoelectric Point (pI)

49.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMR5N	PF14416	6 - 43	8.5e-07	PMR5 N terminal Domain
PC-Esterase	PF13839	65 - 126	1.7e-09	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
PC-Esterase	PF13839	162 - 224	3.9e-18	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003034)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G14530
fragaria_vesca	FvH4_2g02780 FvH4_2g02780 FvH4_2g02780 FvH4_2g02780 FvH4_2g02780 FvH4_2g02780 FvH4_2g02780 FvH4_2g02780
malus_domestica	MD10G1114100.v1.1
prunus_persica	Prupe.8G155600_v2.0.a1
pyrus_communis	pycom05g10660 pycom10g09850
rosa_chinensis	RchiOBHm_Chr6g0247241 RchiOBHm_Chr6g0247271
rosa_laevigata	RLG00000034791 RLG00000034793
rosa_multiflora	Rmu_co8250203.1_g000001 Rmu_sc0000745.1_g000038 Rmu_sc0000745.1_g000042 Rmu_sc0003226.1_g000010 Rmu_sc0003226.1_g000047 Rmu_sc0004368.1_g000009 Rmu_sc0004368.1_g000017
rosa_roxburghii	Rroxscaffold_180G00433570 Rroxscaffold_7G00214220
rosa_rugosa	Rorug05G0524400
rosa_samantha	Rh6AG038700 Rh6AG039700 Rh6BG033700 Rh6BG034000 Rh6BG034700 Rh6BG034900 Rh6CG034400 Rh6DG032000
rosa_wichuraiana	Rw6G003340 Rw6G003370 Rw6G003420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	541
AccII	CGCG	2 cut(s)	137, 306
AciI	CCGC	4 cut(s)	135, 194, 286, 306
AclWI	GGATC	1 cut(s)	50
AcoI	YGGCCR	2 cut(s)	132, 287
AdeI	CACNNNGTG	1 cut(s)	464
AfaI	GTAC	1 cut(s)	71
AfiI	CCNNNNNNNGG	5 cut(s)	222, 481, 511, 522, 541
AgsI	TTSAA	4 cut(s)	97, 189, 323, 431
AjnI	CCWGG	2 cut(s)	38, 634
AleI	CACNNNNGTG	1 cut(s)	558
AluBI	AGCT	1 cut(s)	593
AluI	AGCT	1 cut(s)	593
Alw26I	GTCTC	1 cut(s)	66
AlwI	GGATC	1 cut(s)	50
AlwNI	CAGNNNCTG	1 cut(s)	593
AoxI	GGCC	4 cut(s)	132, 287, 472, 513
ApeKI	GCWGC	1 cut(s)	590
ArsI	GACNNNNNNTTYG	2 cut(s)	343, 375
AspS9I	GGNCC	2 cut(s)	15, 514
AsuC2I	CCSGG	1 cut(s)	13
AsuHPI	GGTGA	2 cut(s)	221, 545
AvaII	GGWCC	1 cut(s)	15
BanII	GRGCYC	1 cut(s)	388
BauI	CACGAG	1 cut(s)	491
BbvI	GCAGC	1 cut(s)	602
BccI	CCATC	3 cut(s)	26, 588, 592
BceAI	ACGGC	2 cut(s)	147, 168
BcgI	CGANNNNNNTGC	2 cut(s)	38, 72
BciT130I	CCWGG	2 cut(s)	40, 636
BcnI	CCSGG	1 cut(s)	13
BcoDI	GTCTC	1 cut(s)	66
BfaI	CTAG	1 cut(s)	197
BglII	AGATCT	1 cut(s)	90
BisI	GCNGC	3 cut(s)	135, 287, 591
BlsI	GCNGC	3 cut(s)	136, 288, 592
Bme1390I	CCNGG	3 cut(s)	13, 40, 636
Bme18I	GGWCC	1 cut(s)	15
BmgT120I	GGNCC	2 cut(s)	15, 514
BmiI	GGNNCC	5 cut(s)	6, 16, 37, 387, 450
BmrFI	CCNGG	3 cut(s)	13, 40, 636
BmsI	GCATC	1 cut(s)	637
Bpu10I	CCTNAGC	1 cut(s)	164
BpuEI	CTTGAG	1 cut(s)	539
BpuMI	CCSGG	1 cut(s)	13
BsaWI	WCCGGW	1 cut(s)	222
Bsc4I	CCNNNNNNNGG	5 cut(s)	222, 481, 511, 522, 541
Bse1I	ACTGG	1 cut(s)	290
Bse3DI	GCAATG	1 cut(s)	175
BseBI	CCWGG	2 cut(s)	40, 636
BseGI	GGATG	1 cut(s)	580
BseLI	CCNNNNNNNGG	5 cut(s)	222, 481, 511, 522, 541
BseMI	GCAATG	1 cut(s)	175
BseMII	CTCAG	1 cut(s)	548
BseNI	ACTGG	1 cut(s)	290
BseX3I	CGGCCG	1 cut(s)	132
BseXI	GCAGC	1 cut(s)	602
Bsh1236I	CGCG	2 cut(s)	137, 306
Bsh1285I	CGRYCG	1 cut(s)	135
BshFI	GGCC	4 cut(s)	134, 289, 474, 515
BsiEI	CGRYCG	1 cut(s)	135
BsiSI	CCGG	2 cut(s)	12, 223
BslI	CCNNNNNNNGG	5 cut(s)	222, 481, 511, 522, 541
BsmAI	GTCTC	1 cut(s)	66
BsmBI	CGTCTC	1 cut(s)	66
BsmI	GAATGC	1 cut(s)	61
BsnI	GGCC	4 cut(s)	134, 289, 474, 515
Bsp1286I	GDGCHC	1 cut(s)	388
Bsp143I	GATC	4 cut(s)	42, 90, 174, 301
BspACI	CCGC	4 cut(s)	135, 194, 286, 306
BspANI	GGCC	4 cut(s)	134, 289, 474, 515
BspCNI	CTCAG	1 cut(s)	549
BspFNI	CGCG	2 cut(s)	137, 306
BspLI	GGNNCC	5 cut(s)	6, 16, 37, 387, 450
BspPI	GGATC	1 cut(s)	50
BsrDI	GCAATG	1 cut(s)	175
BsrI	ACTGG	1 cut(s)	290
BssMI	GATC	4 cut(s)	42, 90, 174, 301
BssSI	CACGAG	1 cut(s)	491
Bst2BI	CACGAG	1 cut(s)	491
Bst2UI	CCWGG	2 cut(s)	40, 636
Bst4CI	ACNGT	2 cut(s)	374, 675
BstC8I	GCNNGC	3 cut(s)	9, 472, 632
BstDEI	CTNAG	2 cut(s)	164, 557
BstENI	CCTNNNNNAGG	1 cut(s)	509
BstF5I	GGATG	1 cut(s)	580
BstFNI	CGCG	2 cut(s)	137, 306
BstKTI	GATC	4 cut(s)	45, 93, 177, 304
BstMAI	GTCTC	1 cut(s)	66
BstMBI	GATC	4 cut(s)	42, 90, 174, 301
BstMCI	CGRYCG	1 cut(s)	135
BstMWI	GCNNNNNNNGC	2 cut(s)	108, 117
BstNI	CCWGG	2 cut(s)	40, 636
BstSCI	CCNGG	3 cut(s)	11, 38, 634
BstUI	CGCG	2 cut(s)	137, 306
BstV1I	GCAGC	1 cut(s)	602
BstX2I	RGATCY	2 cut(s)	42, 90
BstYI	RGATCY	2 cut(s)	42, 90
BstZI	CGGCCG	1 cut(s)	132
BsuRI	GGCC	4 cut(s)	134, 289, 474, 515
BtsCI	GGATG	1 cut(s)	580
Cac8I	GCNNGC	3 cut(s)	9, 472, 632
CaiI	CAGNNNCTG	1 cut(s)	593
Cfr13I	GGNCC	2 cut(s)	15, 514
CseI	GACGC	2 cut(s)	48, 476
Csp6I	GTAC	1 cut(s)	70
CviQI	GTAC	1 cut(s)	70
DdeI	CTNAG	2 cut(s)	164, 557
DpnI	GATC	4 cut(s)	44, 92, 176, 303
DpnII	GATC	4 cut(s)	42, 90, 174, 301
DraIII	CACNNNGTG	1 cut(s)	464
EaeI	YGGCCR	2 cut(s)	132, 287
EagI	CGGCCG	1 cut(s)	132
EclXI	CGGCCG	1 cut(s)	132
Eco24I	GRGCYC	1 cut(s)	388
Eco47I	GGWCC	1 cut(s)	15
Eco52I	CGGCCG	1 cut(s)	132
EcoNI	CCTNNNNNAGG	1 cut(s)	509
EcoO109I	RGGNCCY	2 cut(s)	15, 514
EcoRII	CCWGG	2 cut(s)	38, 634
EcoT22I	ATGCAT	1 cut(s)	624
EcoT38I	GRGCYC	1 cut(s)	388
Esp3I	CGTCTC	1 cut(s)	66
FaiI	YATR	8 cut(s)	230, 327, 407, 482, 537, 548, 620, 668
FauI	CCCGC	2 cut(s)	201, 299
Fnu4HI	GCNGC	3 cut(s)	135, 287, 591
FokI	GGATG	1 cut(s)	567
FriOI	GRGCYC	1 cut(s)	388
Fsp4HI	GCNGC	3 cut(s)	135, 287, 591
FspBI	CTAG	1 cut(s)	197
GluI	GCNGC	3 cut(s)	135, 287, 591
HaeIII	GGCC	4 cut(s)	134, 289, 474, 515
HapII	CCGG	2 cut(s)	12, 223
HgaI	GACGC	2 cut(s)	48, 476
HinfI	GANTC	3 cut(s)	212, 489, 496
HpaII	CCGG	2 cut(s)	12, 223
HphI	GGTGA	2 cut(s)	221, 545
Hpy166II	GTNNAC	1 cut(s)	312
Hpy188I	TCNGA	4 cut(s)	31, 351, 569, 689
Hpy188III	TCNNGA	2 cut(s)	464, 493
Hpy8I	GTNNAC	1 cut(s)	312
HpyCH4III	ACNGT	2 cut(s)	374, 675
HpyCH4V	TGCA	3 cut(s)	111, 392, 622
HpyF10VI	GCNNNNNNNGC	2 cut(s)	108, 117
HpyF3I	CTNAG	2 cut(s)	164, 557
Kzo9I	GATC	4 cut(s)	42, 90, 174, 301
LmnI	GCTCC	2 cut(s)	4, 391
Lsp1109I	GCAGC	1 cut(s)	602
LweI	GCATC	1 cut(s)	637
MaeI	CTAG	1 cut(s)	197
MaeIII	GTNAC	3 cut(s)	20, 368, 464
MalI	GATC	4 cut(s)	44, 92, 176, 303
MboI	GATC	4 cut(s)	42, 90, 174, 301
MboII	GAAGA	3 cut(s)	85, 311, 613
MflI	RGATCY	2 cut(s)	42, 90
MhlI	GDGCHC	1 cut(s)	388
MluCI	AATT	1 cut(s)	106
MlyI	GAGTC	1 cut(s)	483
MmeI	TCCRAC	2 cut(s)	152, 479
MnlI	CCTC	3 cut(s)	146, 462, 514
Mph1103I	ATGCAT	1 cut(s)	624
MseI	TTAA	2 cut(s)	218, 677
MslI	CAYNNNNRTG	1 cut(s)	558
MspA1I	CMGCKG	1 cut(s)	593
MspI	CCGG	2 cut(s)	12, 223
MspR9I	CCNGG	3 cut(s)	13, 40, 636
Mva1269I	GAATGC	1 cut(s)	61
MvaI	CCWGG	2 cut(s)	40, 636
MvnI	CGCG	2 cut(s)	137, 306
MwoI	GCNNNNNNNGC	2 cut(s)	108, 117
NciI	CCSGG	1 cut(s)	13
NdeII	GATC	4 cut(s)	42, 90, 174, 301
NlaIV	GGNNCC	5 cut(s)	6, 16, 37, 387, 450
NmuCI	GTSAC	2 cut(s)	20, 464
NsiI	ATGCAT	1 cut(s)	624
OliI	CACNNNNGTG	1 cut(s)	558
PctI	GAATGC	1 cut(s)	61
PfeI	GAWTC	2 cut(s)	212, 496
PflMI	CCANNNNNTGG	1 cut(s)	541
PkrI	GCNGC	3 cut(s)	136, 288, 592
PleI	GAGTC	1 cut(s)	483
PpsI	GAGTC	1 cut(s)	483
PpuMI	RGGWCCY	1 cut(s)	15
Psp5II	RGGWCCY	1 cut(s)	15
Psp6I	CCWGG	2 cut(s)	38, 634
PspGI	CCWGG	2 cut(s)	38, 634
PspN4I	GGNNCC	5 cut(s)	6, 16, 37, 387, 450
PspPI	GGNCC	2 cut(s)	15, 514
PspPPI	RGGWCCY	1 cut(s)	15
PstNI	CAGNNNCTG	1 cut(s)	593
PsuI	RGATCY	2 cut(s)	42, 90
PvuII	CAGCTG	1 cut(s)	593
RsaI	GTAC	1 cut(s)	71
RsaNI	GTAC	1 cut(s)	70
RseI	CAYNNNNRTG	1 cut(s)	558
SaqAI	TTAA	2 cut(s)	218, 677
SatI	GCNGC	3 cut(s)	135, 287, 591
Sau3AI	GATC	4 cut(s)	42, 90, 174, 301
Sau96I	GGNCC	2 cut(s)	15, 514
SchI	GAGTC	1 cut(s)	483
ScrFI	CCNGG	3 cut(s)	13, 40, 636
SduI	GDGCHC	1 cut(s)	388
SetI	ASST	7 cut(s)	41, 83, 157, 380, 507, 558, 595
SfaNI	GCATC	1 cut(s)	637
SinI	GGWCC	1 cut(s)	15
SmiMI	CAYNNNNRTG	1 cut(s)	558
SmlI	CTYRAG	1 cut(s)	518
SmoI	CTYRAG	1 cut(s)	518
Sse9I	AATT	1 cut(s)	106
SsiI	CCGC	4 cut(s)	135, 194, 286, 306
SspMI	CTAG	1 cut(s)	197
StyD4I	CCNGG	3 cut(s)	11, 38, 634
TaaI	ACNGT	2 cut(s)	374, 675
TaqI	TCGA	1 cut(s)	266
TasI	AATT	1 cut(s)	106
TauI	GCSGC	2 cut(s)	137, 289
TfiI	GAWTC	2 cut(s)	212, 496
Tru1I	TTAA	2 cut(s)	218, 677
Tru9I	TTAA	2 cut(s)	218, 677
TseFI	GTSAC	2 cut(s)	20, 464
TseI	GCWGC	1 cut(s)	590
Tsp45I	GTSAC	2 cut(s)	20, 464
TspDTI	ATGAA	2 cut(s)	422, 655
TspGWI	ACGGA	1 cut(s)	324
Van91I	CCANNNNNTGG	1 cut(s)	541
VpaK11BI	GGWCC	1 cut(s)	15
XagI	CCTNNNNNAGG	1 cut(s)	509
XspI	CTAG	1 cut(s)	197
Zsp2I	ATGCAT	1 cut(s)	624

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.