Rh6AG039700

Protein trichome birefringence-like 13

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
Physical Location & Seq
Forward (+)
5496415 .. 5498919
2505 bp
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UTR
Exon/CDS
Intron
Rh6AG039700.1

Sequence Viewer

Length: 1266 bp
ATGGCATCGAGAGACCTCTCTCACTTGCCAAACCAGACAAAGAAAGTCCCTTTCTTCTTACCTCTCCTCTCCCTCCTCTGCTTCATTTCCATCTTCGCCGTTCTCTCGTACATTAGAAACACATCCTCCGTTCCCTCCCAACCTCACAGCTCCCTCGAATTCCGGGAACCCCCGGGATCCGACCCGACGGAGCCGGCCGGGTCCTGCGACTACTCCGATGGAACCTGGATCCACGACCCGAATGCGTCTCCCAAGTACGACAACACCTGCAAGGAGATCTTCAAGGGCTGGAATTGCATTTCCAGCAACAAATCCAACGGCCGCGAACTCCTCAAGTGGAGGTGGAAGCCTAAGCACTGTCATCTCCCGCCGTTCGATCCTGCTAGGTTTCTTCAGGTGTACAGAGACACCAGCATTGGGTTTATTGGTGATTCCTTGAACCGGAATATGTTTGTTTCGCTGAAACGCGTGTCGAGTGAAGTAAAGAAGTGGCGGCCGGTTGGTGCTGATCGCGGGTTCACATTTCTTCAGTACAATGTTACGCTTGCGTATCATCGGACAAATCTTTTGGCTCGTTACGGTAGGTGGTCAGCCAATTCTAATGGTGGCGTGCTGGAATCTCTTGGATATAAAGAGGGTTATAGAGTTGATGTTGACATTCCGGTAGACACATGGGCAGAATCTCTAAGCGTTCATGACATTCTGATATTCAACACAGGGCACTGGTGGTGGGCTCCTGCAAAGTTTGACCCTATGAAGTCGCCTTTGCTTTTCTTTGAAAATGGTCAGCCTGTGGTTCCTCCAGTACTTCCTGAGGCTGGCCTCGATATGGTTATGAAACATATGGTAATGTTTTTAGAGAAGAGACTGAAACCTGGTGCAATCAAATTCTTTCGTACTCAATCACCTAGACATTTTGAAGGAGGTGACTGGAACCAAGGTGGTTCTTGTAACCGGCAAAATCCTTTGTTGCCAGAGCAGGTTGAAGAACTCTTCTCATTAAAGAATAATGGAACAAATGTAGAGGCACGACTCGTGAATCAACACCTTTACAAGGCCCTTGAGGGGTCAAGTTTCCATATTTTGGACATAACCCACCTGAGTGAGTTCAGAGCAGATGCCCATCCATCGGCAGCTGGTGGGAAGAAGCACGATGATTGTATGCACTGGTGCTTGCCAGGAATAACAGATACTTGGAATGACTTGTTCATAGCACAGTTAAATAATTATTTCATTCCATTGAAAATCTCTTGCGCAAGTCATTGA

Protein Analysis

421

Amino Acids

47.86

Weight (kDa)

8.29

Isoelectric Point (pI)

40.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMR5N PF14416 68 - 121 2.8e-14 PMR5 N terminal Domain
PC-Esterase PF13839 122 - 405 8.1e-64 GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 275
Acc16I TGCGCA 1 cut(s) 1255
Acc36I ACCTGC 2 cut(s) 275, 970
AccB7I CCANNNNNTGG 1 cut(s) 1084
AccI GTMKAC 1 cut(s) 666
AccII CGCG 3 cut(s) 324, 468, 513
AciI CCGC 4 cut(s) 322, 368, 493, 513
AclWI GGATC 5 cut(s) 171, 184, 223, 236, 371
AcoI YGGCCR 3 cut(s) 195, 319, 494
AcsI RAATTY 2 cut(s) 158, 887
AcuI CTGAAG 2 cut(s) 377, 512
AfaI GTAC 6 cut(s) 110, 257, 401, 533, 807, 898
AfiI CCNNNNNNNGG 8 cut(s) 417, 441, 818, 829, 1054, 1065, 1084, 1129
AflIII ACRYGT 1 cut(s) 466
AgsI TTSAA 7 cut(s) 283, 439, 712, 779, 920, 986, 1243
AjnI CCWGG 3 cut(s) 224, 874, 1177
AleI CACNNNNGTG 1 cut(s) 1101
AluBI AGCT 2 cut(s) 150, 1136
AluI AGCT 2 cut(s) 150, 1136
Alw26I GTCTC 4 cut(s) 6, 252, 399, 859
AlwI GGATC 5 cut(s) 171, 184, 223, 236, 371
Ama87I CYCGRG 1 cut(s) 172
AoxI GGCC 5 cut(s) 195, 319, 494, 820, 1056
ApeKI GCWGC 1 cut(s) 1133
ApoI RAATTY 2 cut(s) 158, 887
ArsI GACNNNNNNTTYG 2 cut(s) 550, 582
AspLEI GCGC 1 cut(s) 1256
AspS9I GGNCC 2 cut(s) 201, 1057
AsuC2I CCSGG 4 cut(s) 164, 173, 174, 199
AsuHPI GGTGA 3 cut(s) 440, 897, 938
AvaI CYCGRG 1 cut(s) 172
AvaII GGWCC 1 cut(s) 201
AxyI CCTNAGG 1 cut(s) 813
BaeGI GKGCMC 1 cut(s) 723
BamHI GGATCC 2 cut(s) 176, 228
BanII GRGCYC 1 cut(s) 736
BauI CACGAG 1 cut(s) 1034
BbvI GCAGC 1 cut(s) 1145
BccI CCATC 4 cut(s) 98, 212, 1131, 1135
BceAI ACGGC 3 cut(s) 83, 334, 355
BcgI CGANNNNNNTGC 2 cut(s) 224, 258
BciT130I CCWGG 3 cut(s) 226, 876, 1179
BcnI CCSGG 4 cut(s) 164, 173, 174, 199
BcoDI GTCTC 4 cut(s) 6, 252, 399, 859
BfaI CTAG 2 cut(s) 384, 909
BfuAI ACCTGC 2 cut(s) 275, 970
BglII AGATCT 1 cut(s) 276
BisI GCNGC 3 cut(s) 322, 494, 1134
BlsI GCNGC 3 cut(s) 323, 495, 1135
BmcAI AGTACT 1 cut(s) 807
Bme1390I CCNGG 7 cut(s) 164, 173, 174, 199, 226, 876, 1179
Bme18I GGWCC 1 cut(s) 201
BmeT110I CYCGRG 1 cut(s) 172
BmgT120I GGNCC 2 cut(s) 201, 1057
BmiI GGNNCC 9 cut(s) 168, 178, 192, 202, 223, 230, 735, 798, 935
BmrFI CCNGG 7 cut(s) 164, 173, 174, 199, 226, 876, 1179
BmsI GCATC 2 cut(s) 14, 1108
BpmI CTGGAG 1 cut(s) 786
Bpu10I CCTNAGC 1 cut(s) 351
BpuEI CTTGAG 2 cut(s) 317, 1082
BpuMI CCSGG 4 cut(s) 164, 173, 174, 199
BsaBI GATNNNNATC 1 cut(s) 1122
BsaI GGTCTC 1 cut(s) 6
BsaJI CCNNGG 3 cut(s) 171, 172, 937
BsaWI WCCGGW 2 cut(s) 441, 661
BsaXI ACNNNNNCTCC 2 cut(s) 110, 140
Bsc4I CCNNNNNNNGG 8 cut(s) 417, 441, 818, 829, 1054, 1065, 1084, 1129
Bse118I RCCGGY 3 cut(s) 193, 496, 954
Bse1I ACTGG 4 cut(s) 728, 803, 935, 1172
Bse21I CCTNAGG 1 cut(s) 813
Bse8I GATNNNNATC 1 cut(s) 1122
BseBI CCWGG 3 cut(s) 226, 876, 1179
BseDI CCNNGG 3 cut(s) 171, 172, 937
BseGI GGATG 2 cut(s) 122, 1123
BseJI GATNNNNATC 1 cut(s) 1122
BseLI CCNNNNNNNGG 8 cut(s) 417, 441, 818, 829, 1054, 1065, 1084, 1129
BseMII CTCAG 2 cut(s) 804, 1091
BseNI ACTGG 4 cut(s) 728, 803, 935, 1172
BseRI GAGGAG 3 cut(s) 56, 65, 320
BseSI GKGCMC 1 cut(s) 723
BseX3I CGGCCG 3 cut(s) 195, 319, 494
BseXI GCAGC 1 cut(s) 1145
Bsh1236I CGCG 3 cut(s) 324, 468, 513
Bsh1285I CGRYCG 3 cut(s) 198, 322, 497
BshFI GGCC 5 cut(s) 197, 321, 496, 822, 1058
BsiEI CGRYCG 3 cut(s) 198, 322, 497
BsiHKCI CYCGRG 1 cut(s) 172
BsiSI CCGG 8 cut(s) 163, 173, 194, 198, 442, 497, 662, 955
BslFI GGGAC 1 cut(s) 32
BslI CCNNNNNNNGG 8 cut(s) 417, 441, 818, 829, 1054, 1065, 1084, 1129
BsmAI GTCTC 4 cut(s) 6, 252, 399, 859
BsmBI CGTCTC 1 cut(s) 252
BsmFI GGGAC 1 cut(s) 32
BsmI GAATGC 1 cut(s) 247
BsnI GGCC 5 cut(s) 197, 321, 496, 822, 1058
Bso31I GGTCTC 1 cut(s) 6
BsoBI CYCGRG 1 cut(s) 172
Bsp1286I GDGCHC 2 cut(s) 723, 736
Bsp1407I TGTACA 1 cut(s) 399
Bsp143I GATC 5 cut(s) 176, 228, 276, 376, 508
BspACI CCGC 4 cut(s) 322, 368, 493, 513
BspANI GGCC 5 cut(s) 197, 321, 496, 822, 1058
BspCNI CTCAG 2 cut(s) 805, 1092
BspFNI CGCG 3 cut(s) 324, 468, 513
BspHI TCATGA 1 cut(s) 694
BspLI GGNNCC 9 cut(s) 168, 178, 192, 202, 223, 230, 735, 798, 935
BspMI ACCTGC 2 cut(s) 275, 970
BspPI GGATC 5 cut(s) 171, 184, 223, 236, 371
BspTNI GGTCTC 1 cut(s) 6
BsrFI RCCGGY 3 cut(s) 193, 496, 954
BsrGI TGTACA 1 cut(s) 399
BsrI ACTGG 4 cut(s) 728, 803, 935, 1172
BssAI RCCGGY 3 cut(s) 193, 496, 954
BssECI CCNNGG 3 cut(s) 171, 172, 937
BssMI GATC 5 cut(s) 176, 228, 276, 376, 508
BssSI CACGAG 1 cut(s) 1034
BssT1I CCWWGG 1 cut(s) 937
Bst2BI CACGAG 1 cut(s) 1034
Bst2UI CCWGG 3 cut(s) 226, 876, 1179
Bst4CI ACNGT 3 cut(s) 359, 581, 1218
Bst6I CTCTTC 2 cut(s) 857, 998
BstAUI TGTACA 1 cut(s) 399
BstC8I GCNNGC 5 cut(s) 195, 546, 611, 820, 1175
BstDEI CTNAG 4 cut(s) 351, 686, 813, 1100
BstENI CCTNNNNNAGG 1 cut(s) 1052
BstF5I GGATG 2 cut(s) 122, 1123
BstFNI CGCG 3 cut(s) 324, 468, 513
BstHHI GCGC 1 cut(s) 1256
BstKTI GATC 5 cut(s) 179, 231, 279, 379, 511
BstMAI GTCTC 4 cut(s) 6, 252, 399, 859
BstMBI GATC 5 cut(s) 176, 228, 276, 376, 508
BstMCI CGRYCG 3 cut(s) 198, 322, 497
BstMWI GCNNNNNNNGC 2 cut(s) 294, 303
BstNI CCWGG 3 cut(s) 226, 876, 1179
BstSCI CCNGG 7 cut(s) 162, 171, 172, 197, 224, 874, 1177
BstSLI GKGCMC 1 cut(s) 723
BstUI CGCG 3 cut(s) 324, 468, 513
BstV1I GCAGC 1 cut(s) 1145
BstX2I RGATCY 3 cut(s) 176, 228, 276
BstYI RGATCY 3 cut(s) 176, 228, 276
BstZI CGGCCG 3 cut(s) 195, 319, 494
Bsu36I CCTNAGG 1 cut(s) 813
BsuRI GGCC 5 cut(s) 197, 321, 496, 822, 1058
BtsCI GGATG 2 cut(s) 122, 1123
BtsIMutI CAGTG 3 cut(s) 355, 721, 1165
BveI ACCTGC 2 cut(s) 275, 970
Cac8I GCNNGC 5 cut(s) 195, 546, 611, 820, 1175
CciI TCATGA 1 cut(s) 694
CfoI GCGC 1 cut(s) 1256
Cfr10I RCCGGY 3 cut(s) 193, 496, 954
Cfr13I GGNCC 2 cut(s) 201, 1057
Cfr9I CCCGGG 1 cut(s) 172
CseI GACGC 1 cut(s) 234
CsiI ACCWGGT 1 cut(s) 874
Csp6I GTAC 6 cut(s) 109, 256, 400, 532, 806, 897
CviAII CATG 2 cut(s) 672, 695
CviQI GTAC 6 cut(s) 109, 256, 400, 532, 806, 897
DdeI CTNAG 4 cut(s) 351, 686, 813, 1100
DpnI GATC 5 cut(s) 178, 230, 278, 378, 510
DpnII GATC 5 cut(s) 176, 228, 276, 376, 508
EaeI YGGCCR 3 cut(s) 195, 319, 494
EagI CGGCCG 3 cut(s) 195, 319, 494
Eam1104I CTCTTC 2 cut(s) 857, 998
EarI CTCTTC 2 cut(s) 857, 998
EclXI CGGCCG 3 cut(s) 195, 319, 494
Eco130I CCWWGG 1 cut(s) 937
Eco24I GRGCYC 1 cut(s) 736
Eco31I GGTCTC 1 cut(s) 6
Eco47I GGWCC 1 cut(s) 201
Eco52I CGGCCG 3 cut(s) 195, 319, 494
Eco57I CTGAAG 2 cut(s) 377, 512
Eco81I CCTNAGG 1 cut(s) 813
Eco88I CYCGRG 1 cut(s) 172
EcoNI CCTNNNNNAGG 1 cut(s) 1052
EcoO109I RGGNCCY 2 cut(s) 201, 1057
EcoRI GAATTC 1 cut(s) 158
EcoRII CCWGG 3 cut(s) 224, 874, 1177
EcoT14I CCWWGG 1 cut(s) 937
EcoT38I GRGCYC 1 cut(s) 736
ErhI CCWWGG 1 cut(s) 937
Esp3I CGTCTC 1 cut(s) 252
FaeI CATG 2 cut(s) 675, 698
FalI AAGNNNNNCTT 2 cut(s) 263, 295
FaqI GGGAC 1 cut(s) 32
FatI CATG 2 cut(s) 671, 694
FauI CCCGC 2 cut(s) 375, 506
FauNDI CATATG 1 cut(s) 843
FblI GTMKAC 1 cut(s) 666
Fnu4HI GCNGC 3 cut(s) 322, 494, 1134
FokI GGATG 2 cut(s) 109, 1110
FriOI GRGCYC 1 cut(s) 736
Fsp4HI GCNGC 3 cut(s) 322, 494, 1134
FspBI CTAG 2 cut(s) 384, 909
FspI TGCGCA 1 cut(s) 1255
GlaI GCGC 1 cut(s) 1255
GluI GCNGC 3 cut(s) 322, 494, 1134
GsuI CTGGAG 1 cut(s) 786
HaeIII GGCC 5 cut(s) 197, 321, 496, 822, 1058
HapII CCGG 8 cut(s) 163, 173, 194, 198, 442, 497, 662, 955
HgaI GACGC 1 cut(s) 234
HhaI GCGC 1 cut(s) 1256
Hin1II CATG 2 cut(s) 675, 698
Hin6I GCGC 1 cut(s) 1254
HinP1I GCGC 1 cut(s) 1254
HincII GTYRAC 1 cut(s) 655
HindII GTYRAC 1 cut(s) 655
HinfI GANTC 5 cut(s) 431, 617, 680, 1032, 1039
HpaII CCGG 8 cut(s) 163, 173, 194, 198, 442, 497, 662, 955
HphI GGTGA 3 cut(s) 440, 897, 938
Hpy166II GTNNAC 4 cut(s) 400, 519, 655, 667
Hpy188I TCNGA 5 cut(s) 181, 217, 558, 705, 1112
Hpy188III TCNNGA 4 cut(s) 9, 695, 812, 1036
Hpy8I GTNNAC 4 cut(s) 400, 519, 655, 667
Hpy99I CGWCG 1 cut(s) 190
HpyAV CCTTC 1 cut(s) 914
HpyCH4III ACNGT 3 cut(s) 359, 581, 1218
HpyCH4V TGCA 5 cut(s) 270, 297, 740, 881, 1165
HpyF10VI GCNNNNNNNGC 2 cut(s) 294, 303
HpyF3I CTNAG 4 cut(s) 351, 686, 813, 1100
Hsp92II CATG 2 cut(s) 675, 698
HspAI GCGC 1 cut(s) 1254
KroI GCCGGC 1 cut(s) 193
KroNI GCCGGC 1 cut(s) 195
Kzo9I GATC 5 cut(s) 176, 228, 276, 376, 508
LmnI GCTCC 3 cut(s) 155, 190, 739
Lsp1109I GCAGC 1 cut(s) 1145
LweI GCATC 2 cut(s) 14, 1108
MabI ACCWGGT 1 cut(s) 874
MaeI CTAG 2 cut(s) 384, 909
MaeIII GTNAC 4 cut(s) 538, 575, 926, 950
MalI GATC 5 cut(s) 178, 230, 278, 378, 510
MboI GATC 5 cut(s) 176, 228, 276, 376, 508
MboII GAAGA 9 cut(s) 46, 85, 271, 383, 518, 874, 985, 998, 1156
MflI RGATCY 3 cut(s) 176, 228, 276
MhlI GDGCHC 2 cut(s) 723, 736
MluCI AATT 5 cut(s) 158, 292, 595, 887, 1225
MluI ACGCGT 1 cut(s) 466
MlyI GAGTC 1 cut(s) 1026
MmeI TCCRAC 2 cut(s) 204, 339
MroNI GCCGGC 1 cut(s) 193
MseI TTAA 2 cut(s) 1001, 1220
MslI CAYNNNNRTG 1 cut(s) 1101
MspA1I CMGCKG 1 cut(s) 1136
MspI CCGG 8 cut(s) 163, 173, 194, 198, 442, 497, 662, 955
MspR9I CCNGG 7 cut(s) 164, 173, 174, 199, 226, 876, 1179
Mva1269I GAATGC 1 cut(s) 247
MvaI CCWGG 3 cut(s) 226, 876, 1179
MvnI CGCG 3 cut(s) 324, 468, 513
MwoI GCNNNNNNNGC 2 cut(s) 294, 303
NaeI GCCGGC 1 cut(s) 195
NciI CCSGG 4 cut(s) 164, 173, 174, 199
NdeI CATATG 1 cut(s) 843
NdeII GATC 5 cut(s) 176, 228, 276, 376, 508
NgoMIV GCCGGC 1 cut(s) 193
NlaIII CATG 2 cut(s) 675, 698
NlaIV GGNNCC 9 cut(s) 168, 178, 192, 202, 223, 230, 735, 798, 935
NmuCI GTSAC 1 cut(s) 926
NsbI TGCGCA 1 cut(s) 1255
OliI CACNNNNGTG 1 cut(s) 1101
PagI TCATGA 1 cut(s) 694
PaqCI CACCTGC 1 cut(s) 275
PctI GAATGC 1 cut(s) 247
PdiI GCCGGC 1 cut(s) 195
PfeI GAWTC 4 cut(s) 431, 617, 680, 1039
PflMI CCANNNNNTGG 1 cut(s) 1084
PfoI TCCNGGA 1 cut(s) 162
PkrI GCNGC 3 cut(s) 323, 495, 1135
PleI GAGTC 1 cut(s) 1026
PpsI GAGTC 1 cut(s) 1026
PpuMI RGGWCCY 1 cut(s) 201
Psp5II RGGWCCY 1 cut(s) 201
Psp6I CCWGG 3 cut(s) 224, 874, 1177
PspGI CCWGG 3 cut(s) 224, 874, 1177
PspN4I GGNNCC 9 cut(s) 168, 178, 192, 202, 223, 230, 735, 798, 935
PspPI GGNCC 2 cut(s) 201, 1057
PspPPI RGGWCCY 1 cut(s) 201
PsuI RGATCY 3 cut(s) 176, 228, 276
PvuII CAGCTG 1 cut(s) 1136
RsaI GTAC 6 cut(s) 110, 257, 401, 533, 807, 898
RsaNI GTAC 6 cut(s) 109, 256, 400, 532, 806, 897
RseI CAYNNNNRTG 1 cut(s) 1101
SaqAI TTAA 2 cut(s) 1001, 1220
SatI GCNGC 3 cut(s) 322, 494, 1134
Sau3AI GATC 5 cut(s) 176, 228, 276, 376, 508
Sau96I GGNCC 2 cut(s) 201, 1057
ScaI AGTACT 1 cut(s) 807
SchI GAGTC 1 cut(s) 1026
ScrFI CCNGG 7 cut(s) 164, 173, 174, 199, 226, 876, 1179
SduI GDGCHC 2 cut(s) 723, 736
SexAI ACCWGGT 1 cut(s) 874
SfaNI GCATC 2 cut(s) 14, 1108
SinI GGWCC 1 cut(s) 201
SmaI CCCGGG 1 cut(s) 174
SmiMI CAYNNNNRTG 1 cut(s) 1101
SmlI CTYRAG 2 cut(s) 332, 1061
SmoI CTYRAG 2 cut(s) 332, 1061
Sse9I AATT 5 cut(s) 158, 292, 595, 887, 1225
SsiI CCGC 4 cut(s) 322, 368, 493, 513
SspMI CTAG 2 cut(s) 384, 909
StyD4I CCNGG 7 cut(s) 162, 171, 172, 197, 224, 874, 1177
StyI CCWWGG 1 cut(s) 937
TaaI ACNGT 3 cut(s) 359, 581, 1218
TaqI TCGA 5 cut(s) 8, 156, 375, 473, 825
TasI AATT 5 cut(s) 158, 292, 595, 887, 1225
TatI WGTACW 3 cut(s) 399, 531, 805
TauI GCSGC 2 cut(s) 324, 496
TfiI GAWTC 4 cut(s) 431, 617, 680, 1039
Tru1I TTAA 2 cut(s) 1001, 1220
Tru9I TTAA 2 cut(s) 1001, 1220
TscAI CASTG 3 cut(s) 362, 728, 1172
TseFI GTSAC 1 cut(s) 926
TseI GCWGC 1 cut(s) 1133
Tsp45I GTSAC 1 cut(s) 926
TspDTI ATGAA 6 cut(s) 73, 683, 770, 851, 1198, 1222
TspGWI ACGGA 2 cut(s) 118, 203
TspMI CCCGGG 1 cut(s) 172
TspRI CASTG 3 cut(s) 362, 728, 1172
Van91I CCANNNNNTGG 1 cut(s) 1084
VpaK11BI GGWCC 1 cut(s) 201
XagI CCTNNNNNAGG 1 cut(s) 1052
XapI RAATTY 2 cut(s) 158, 887
XmaI CCCGGG 1 cut(s) 172
XmiI GTMKAC 1 cut(s) 666
XspI CTAG 2 cut(s) 384, 909
ZrmI AGTACT 1 cut(s) 807
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.