Rmu_sc0000745.1_g000042

Protein trichome birefringence-like 13

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000745.1
Physical Location & Seq
Reverse (-)
178362 .. 182122
3761 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000745.1_g000042.1.cds

Sequence Viewer

Length: 1944 bp
atggcatcgagagacctctttcacttgccaaaccagacaaagaaagtccctttcttcttacctctcctctccctcctctgcttcatttccatcttcgctgttctctcttacattagaaacacatcctccgttccctcccaacctcacagctccctcgaattccggaaaccccccggatccgacccgacggagccggccgggtcctgcgacttctccgatggagcctggatctacgacccgaatgcgtctcccaagtacgacaacacctgcaaggagatcttcaagggctggaattgcatttccagcatcaaatccaaccgccgcgaactcatcaacattgttctcccgccgttcgaacccgctaggtttcttcagatgtacagagacaccagcattgggtttattggtgattccttgaaccggaatatgtttgtttcgctgttctgttcgttgaaacgcgtgtcgagtgaagtaaagaagtggcggccagttggtgctgatcgcgggttcacatttcttcagtacaatgttacgcttgcgtatcatcggacaaatcttttggctcgttacggtaggtggtcagccagttctaatggtggcgtgctggaatctcttggatatgaagagggttatagagttgatgttgacattccggttggcacatgggccgaatctctaagctttcatgacattttgatattcaacacagggcactggtggtgggctcctgcaaagtttgaccctatgaagtcgcctttgcttttctttgaaaatggtcagcctgtggttcctccagtacttcctgatgttggccttgatatggttatgaaacacatggtaatgtttgtggagaagagactgaagcctggtgcaatcaaattctttcgtactcaatcacctagacattttgaaggaggtgactggaaccaaggtggttcttgtaaccggaaaaaccctttgtttccagagcaggttgaagtacttttctcattgaagaataatggaacagatgtagaggcacgactcgtgaatcaacacctttacaaggcccttgaggggtcaggtttccatattttggacataacccacctgagcgagttcagagcagatgcccatccatctgcagttggtgggaagaagcacgatgattgtatgcactgcgcaattgctcctcatcgcggcgttatgacgttattgacgttattcattggcgtcattactccggcgttattcatcatcaccatcactccacattatggcgttatggcattatggcattatggcgttatggcattatggcattattcattggcgtcattactccggcgttattcatcatcaccatcactccacattatggcgttatggcattatggcattatggcgttatggcattatggcattattcattggcgtcattactccggcgttattcatcatcaccatcactccacattatggcgttatggcattatggcattatggcgttatggcattatggcattattcattggcgtcattactccggcgttattcatcatcaccatcactccacattatggcgttatggcattatggcattatggcgttatggcattatggcattattcattggcgtcattactccggcgttattcatcatcaccatcactccacattatggcgttatggcattatggcattatggcgttatggcattatggcattattcattggcgtcattactccggcgttattcatcatcaccatcactccacattatggcgttatggcattatggcattatggcgttatggcattatggcattattcattggcgtcattactccggcgttattcatcatcaccatcactccacattatggcgttatggcattatggcattatggcgttatggcattatggcattattcattggcgtcattactccggcgtattgaataa

Protein Analysis

647

Amino Acids

74.25

Weight (kDa)

9.3

Isoelectric Point (pI)

58.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 275
Acc16I TGCGCA 1 cut(s) 1162
Acc36I ACCTGC 2 cut(s) 275, 961
AccB7I CCANNNNNTGG 8 cut(s) 1075, 1256, 1357, 1458, 1559, 1660, 1761, 1862
AccII CGCG 4 cut(s) 324, 459, 504, 1179
AccIII TCCGGA 1 cut(s) 162
AciI CCGC 7 cut(s) 319, 322, 347, 360, 484, 504, 1179
AclWI GGATC 3 cut(s) 171, 184, 236
AcoI YGGCCR 2 cut(s) 195, 485
AcsI RAATTY 2 cut(s) 158, 878
AcuI CTGAAG 3 cut(s) 356, 503, 881
AcyI GRCGYC 8 cut(s) 1212, 1313, 1414, 1515, 1616, 1717, 1818, 1919
AfaI GTAC 6 cut(s) 257, 380, 524, 798, 889, 981
AflIII ACRYGT 1 cut(s) 457
AgsI TTSAA 9 cut(s) 283, 418, 454, 703, 770, 911, 977, 994, 1940
AjnI CCWGG 2 cut(s) 224, 865
AluBI AGCT 2 cut(s) 150, 681
AluI AGCT 2 cut(s) 150, 681
Alw26I GTCTC 4 cut(s) 6, 252, 378, 850
AlwI GGATC 3 cut(s) 171, 184, 236
Aor13HI TCCGGA 1 cut(s) 162
AoxI GGCC 5 cut(s) 195, 485, 666, 811, 1047
ApoI RAATTY 2 cut(s) 158, 878
ArsI GACNNNNNNTTYG 2 cut(s) 541, 573
AspLEI GCGC 1 cut(s) 1163
AspS9I GGNCC 3 cut(s) 201, 666, 1048
AsuC2I CCSGG 2 cut(s) 174, 199
AsuII TTCGAA 1 cut(s) 354
AvaII GGWCC 1 cut(s) 201
BaeGI GKGCMC 1 cut(s) 714
BamHI GGATCC 1 cut(s) 176
BanII GRGCYC 1 cut(s) 727
BauI CACGAG 1 cut(s) 1025
BceAI ACGGC 1 cut(s) 334
BcgI CGANNNNNNTGC 2 cut(s) 224, 258
BciT130I CCWGG 2 cut(s) 226, 867
BcnI CCSGG 2 cut(s) 174, 199
BcoDI GTCTC 4 cut(s) 6, 252, 378, 850
BfaI CTAG 2 cut(s) 363, 900
BfmI CTRYAG 1 cut(s) 1122
BfuAI ACCTGC 2 cut(s) 275, 961
BglII AGATCT 1 cut(s) 276
BisI GCNGC 3 cut(s) 322, 485, 1180
BlsI GCNGC 3 cut(s) 323, 486, 1181
BmcAI AGTACT 2 cut(s) 798, 981
Bme1390I CCNGG 4 cut(s) 174, 199, 226, 867
Bme18I GGWCC 1 cut(s) 201
BmgT120I GGNCC 3 cut(s) 201, 666, 1048
BmiI GGNNCC 7 cut(s) 178, 192, 202, 223, 726, 789, 926
BmrFI CCNGG 4 cut(s) 174, 199, 226, 867
BmsI GCATC 3 cut(s) 14, 315, 1099
BpmI CTGGAG 1 cut(s) 777
Bpu10I CCTNAGC 1 cut(s) 1091
Bpu14I TTCGAA 1 cut(s) 354
BpuEI CTTGAG 1 cut(s) 1073
BpuMI CCSGG 2 cut(s) 174, 199
BsaBI GATNNNNATC 1 cut(s) 1113
BsaHI GRCGYC 8 cut(s) 1212, 1313, 1414, 1515, 1616, 1717, 1818, 1919
BsaI GGTCTC 1 cut(s) 6
BsaJI CCNNGG 2 cut(s) 172, 928
BsaWI WCCGGW 4 cut(s) 162, 420, 652, 945
Bse118I RCCGGY 1 cut(s) 193
Bse1I ACTGG 5 cut(s) 488, 585, 719, 794, 926
Bse8I GATNNNNATC 1 cut(s) 1113
BseAI TCCGGA 1 cut(s) 162
BseBI CCWGG 2 cut(s) 226, 867
BseDI CCNNGG 2 cut(s) 172, 928
BseGI GGATG 2 cut(s) 122, 1114
BseJI GATNNNNATC 1 cut(s) 1113
BseMII CTCAG 1 cut(s) 1082
BseNI ACTGG 5 cut(s) 488, 585, 719, 794, 926
BseRI GAGGAG 3 cut(s) 56, 65, 1161
BseSI GKGCMC 1 cut(s) 714
BseX3I CGGCCG 1 cut(s) 195
Bsh1236I CGCG 4 cut(s) 324, 459, 504, 1179
Bsh1285I CGRYCG 1 cut(s) 198
BshFI GGCC 5 cut(s) 197, 487, 668, 813, 1049
BsiEI CGRYCG 1 cut(s) 198
BslFI GGGAC 1 cut(s) 32
BsmAI GTCTC 4 cut(s) 6, 252, 378, 850
BsmBI CGTCTC 1 cut(s) 252
BsmFI GGGAC 1 cut(s) 32
BsmI GAATGC 1 cut(s) 247
BsnI GGCC 5 cut(s) 197, 487, 668, 813, 1049
Bso31I GGTCTC 1 cut(s) 6
Bsp119I TTCGAA 1 cut(s) 354
Bsp1286I GDGCHC 2 cut(s) 714, 727
Bsp13I TCCGGA 1 cut(s) 162
Bsp1407I TGTACA 1 cut(s) 378
Bsp143I GATC 4 cut(s) 176, 228, 276, 499
BspACI CCGC 7 cut(s) 319, 322, 347, 360, 484, 504, 1179
BspANI GGCC 5 cut(s) 197, 487, 668, 813, 1049
BspCNI CTCAG 1 cut(s) 1083
BspEI TCCGGA 1 cut(s) 162
BspFNI CGCG 4 cut(s) 324, 459, 504, 1179
BspHI TCATGA 1 cut(s) 685
BspLI GGNNCC 7 cut(s) 178, 192, 202, 223, 726, 789, 926
BspMAI CTGCAG 1 cut(s) 1126
BspMI ACCTGC 2 cut(s) 275, 961
BspPI GGATC 3 cut(s) 171, 184, 236
BspT104I TTCGAA 1 cut(s) 354
BspTNI GGTCTC 1 cut(s) 6
BsrFI RCCGGY 1 cut(s) 193
BsrGI TGTACA 1 cut(s) 378
BsrI ACTGG 5 cut(s) 488, 585, 719, 794, 926
BssAI RCCGGY 1 cut(s) 193
BssECI CCNNGG 2 cut(s) 172, 928
BssMI GATC 4 cut(s) 176, 228, 276, 499
BssNI GRCGYC 8 cut(s) 1212, 1313, 1414, 1515, 1616, 1717, 1818, 1919
BssSI CACGAG 1 cut(s) 1025
BssT1I CCWWGG 1 cut(s) 928
Bst2BI CACGAG 1 cut(s) 1025
Bst2UI CCWGG 2 cut(s) 226, 867
Bst4CI ACNGT 1 cut(s) 572
Bst6I CTCTTC 2 cut(s) 618, 848
BstACI GRCGYC 8 cut(s) 1212, 1313, 1414, 1515, 1616, 1717, 1818, 1919
BstAUI TGTACA 1 cut(s) 378
BstBI TTCGAA 1 cut(s) 354
BstC8I GCNNGC 3 cut(s) 195, 537, 602
BstDEI CTNAG 2 cut(s) 677, 1091
BstENI CCTNNNNNAGG 1 cut(s) 1043
BstF5I GGATG 2 cut(s) 122, 1114
BstFNI CGCG 4 cut(s) 324, 459, 504, 1179
BstHHI GCGC 1 cut(s) 1163
BstKTI GATC 4 cut(s) 179, 231, 279, 502
BstMAI GTCTC 4 cut(s) 6, 252, 378, 850
BstMBI GATC 4 cut(s) 176, 228, 276, 499
BstMCI CGRYCG 1 cut(s) 198
BstMWI GCNNNNNNNGC 2 cut(s) 294, 303
BstNI CCWGG 2 cut(s) 226, 867
BstSCI CCNGG 4 cut(s) 172, 197, 224, 865
BstSFI CTRYAG 1 cut(s) 1122
BstSLI GKGCMC 1 cut(s) 714
BstUI CGCG 4 cut(s) 324, 459, 504, 1179
BstX2I RGATCY 3 cut(s) 176, 228, 276
BstYI RGATCY 3 cut(s) 176, 228, 276
BstZI CGGCCG 1 cut(s) 195
BsuRI GGCC 5 cut(s) 197, 487, 668, 813, 1049
BtgZI GCGATG 1 cut(s) 1160
BtsCI GGATG 2 cut(s) 122, 1114
BtsI GCAGTG 1 cut(s) 1156
BtsIMutI CAGTG 2 cut(s) 712, 1156
BveI ACCTGC 2 cut(s) 275, 961
Cac8I GCNNGC 3 cut(s) 195, 537, 602
CciI TCATGA 1 cut(s) 685
CfoI GCGC 1 cut(s) 1163
Cfr10I RCCGGY 1 cut(s) 193
Cfr13I GGNCC 3 cut(s) 201, 666, 1048
CseI GACGC 9 cut(s) 234, 1201, 1302, 1403, 1504, 1605, 1706, 1807, 1908
Csp6I GTAC 6 cut(s) 256, 379, 523, 797, 888, 980
CviAII CATG 3 cut(s) 663, 686, 835
CviQI GTAC 6 cut(s) 256, 379, 523, 797, 888, 980
DdeI CTNAG 2 cut(s) 677, 1091
DpnI GATC 4 cut(s) 178, 230, 278, 501
DpnII GATC 4 cut(s) 176, 228, 276, 499
EaeI YGGCCR 2 cut(s) 195, 485
EagI CGGCCG 1 cut(s) 195
Eam1104I CTCTTC 2 cut(s) 618, 848
EarI CTCTTC 2 cut(s) 618, 848
EclXI CGGCCG 1 cut(s) 195
Eco130I CCWWGG 1 cut(s) 928
Eco24I GRGCYC 1 cut(s) 727
Eco31I GGTCTC 1 cut(s) 6
Eco47I GGWCC 1 cut(s) 201
Eco52I CGGCCG 1 cut(s) 195
Eco57I CTGAAG 3 cut(s) 356, 503, 881
EcoNI CCTNNNNNAGG 1 cut(s) 1043
EcoO109I RGGNCCY 2 cut(s) 201, 1048
EcoRI GAATTC 1 cut(s) 158
EcoRII CCWGG 2 cut(s) 224, 865
EcoT14I CCWWGG 1 cut(s) 928
EcoT38I GRGCYC 1 cut(s) 727
ErhI CCWWGG 1 cut(s) 928
Esp3I CGTCTC 1 cut(s) 252
FaeI CATG 3 cut(s) 666, 689, 838
FalI AAGNNNNNCTT 2 cut(s) 263, 295
FaqI GGGAC 1 cut(s) 32
FatI CATG 3 cut(s) 662, 685, 834
FauI CCCGC 3 cut(s) 354, 367, 497
Fnu4HI GCNGC 3 cut(s) 322, 485, 1180
FokI GGATG 2 cut(s) 109, 1101
FriOI GRGCYC 1 cut(s) 727
Fsp4HI GCNGC 3 cut(s) 322, 485, 1180
FspBI CTAG 2 cut(s) 363, 900
FspI TGCGCA 1 cut(s) 1162
GlaI GCGC 1 cut(s) 1162
GluI GCNGC 3 cut(s) 322, 485, 1180
GsuI CTGGAG 1 cut(s) 777
HaeIII GGCC 5 cut(s) 197, 487, 668, 813, 1049
HgaI GACGC 9 cut(s) 234, 1201, 1302, 1403, 1504, 1605, 1706, 1807, 1908
HhaI GCGC 1 cut(s) 1163
Hin1I GRCGYC 8 cut(s) 1212, 1313, 1414, 1515, 1616, 1717, 1818, 1919
Hin1II CATG 3 cut(s) 666, 689, 838
Hin6I GCGC 1 cut(s) 1161
HinP1I GCGC 1 cut(s) 1161
HincII GTYRAC 1 cut(s) 646
HindII GTYRAC 1 cut(s) 646
HindIII AAGCTT 1 cut(s) 679
HinfI GANTC 5 cut(s) 410, 608, 671, 1023, 1030
Hpy166II GTNNAC 2 cut(s) 510, 646
Hpy188I TCNGA 5 cut(s) 181, 217, 375, 549, 1103
Hpy188III TCNNGA 6 cut(s) 9, 163, 686, 803, 965, 1027
Hpy8I GTNNAC 2 cut(s) 510, 646
Hpy99I CGWCG 1 cut(s) 190
HpyAV CCTTC 1 cut(s) 905
HpyCH4III ACNGT 1 cut(s) 572
HpyCH4IV ACGT 2 cut(s) 1190, 1199
HpyCH4V TGCA 6 cut(s) 270, 297, 731, 872, 1124, 1156
HpyF10VI GCNNNNNNNGC 2 cut(s) 294, 303
HpyF3I CTNAG 2 cut(s) 677, 1091
HpySE526I ACGT 2 cut(s) 1190, 1199
Hsp92I GRCGYC 8 cut(s) 1212, 1313, 1414, 1515, 1616, 1717, 1818, 1919
Hsp92II CATG 3 cut(s) 666, 689, 838
HspAI GCGC 1 cut(s) 1161
Kpn2I TCCGGA 1 cut(s) 162
KroI GCCGGC 1 cut(s) 193
KroNI GCCGGC 1 cut(s) 195
Kzo9I GATC 4 cut(s) 176, 228, 276, 499
LmnI GCTCC 5 cut(s) 155, 190, 221, 730, 1174
LweI GCATC 3 cut(s) 14, 315, 1099
MaeI CTAG 2 cut(s) 363, 900
MaeII ACGT 2 cut(s) 1190, 1199
MaeIII GTNAC 4 cut(s) 529, 566, 917, 941
MalI GATC 4 cut(s) 178, 230, 278, 501
MboI GATC 4 cut(s) 176, 228, 276, 499
MboII GAAGA 9 cut(s) 46, 85, 271, 362, 509, 635, 865, 1006, 1147
MfeI CAATTG 1 cut(s) 1164
MflI RGATCY 3 cut(s) 176, 228, 276
MhlI GDGCHC 2 cut(s) 714, 727
MluCI AATT 4 cut(s) 158, 292, 878, 1164
MluI ACGCGT 1 cut(s) 457
MlyI GAGTC 1 cut(s) 1017
MmeI TCCRAC 2 cut(s) 204, 339
MroI TCCGGA 1 cut(s) 162
MroNI GCCGGC 1 cut(s) 193
MslI CAYNNNNRTG 1 cut(s) 839
MspR9I CCNGG 4 cut(s) 174, 199, 226, 867
MunI CAATTG 1 cut(s) 1164
Mva1269I GAATGC 1 cut(s) 247
MvaI CCWGG 2 cut(s) 226, 867
MvnI CGCG 4 cut(s) 324, 459, 504, 1179
MwoI GCNNNNNNNGC 2 cut(s) 294, 303
NaeI GCCGGC 1 cut(s) 195
NciI CCSGG 2 cut(s) 174, 199
NdeII GATC 4 cut(s) 176, 228, 276, 499
NgoMIV GCCGGC 1 cut(s) 193
NlaIII CATG 3 cut(s) 666, 689, 838
NlaIV GGNNCC 7 cut(s) 178, 192, 202, 223, 726, 789, 926
NmuCI GTSAC 1 cut(s) 917
NsbI TGCGCA 1 cut(s) 1162
NspV TTCGAA 1 cut(s) 354
PagI TCATGA 1 cut(s) 685
PaqCI CACCTGC 1 cut(s) 275
PcsI WCGNNNNNNNCGW 1 cut(s) 1196
PctI GAATGC 1 cut(s) 247
PdiI GCCGGC 1 cut(s) 195
PfeI GAWTC 4 cut(s) 410, 608, 671, 1030
PflMI CCANNNNNTGG 8 cut(s) 1075, 1256, 1357, 1458, 1559, 1660, 1761, 1862
PkrI GCNGC 3 cut(s) 323, 486, 1181
PleI GAGTC 1 cut(s) 1017
PpsI GAGTC 1 cut(s) 1017
PpuMI RGGWCCY 1 cut(s) 201
Psp5II RGGWCCY 1 cut(s) 201
Psp6I CCWGG 2 cut(s) 224, 865
PspGI CCWGG 2 cut(s) 224, 865
PspN4I GGNNCC 7 cut(s) 178, 192, 202, 223, 726, 789, 926
PspPI GGNCC 3 cut(s) 201, 666, 1048
PspPPI RGGWCCY 1 cut(s) 201
PstI CTGCAG 1 cut(s) 1126
PsuI RGATCY 3 cut(s) 176, 228, 276
RsaI GTAC 6 cut(s) 257, 380, 524, 798, 889, 981
RsaNI GTAC 6 cut(s) 256, 379, 523, 797, 888, 980
RseI CAYNNNNRTG 1 cut(s) 839
SatI GCNGC 3 cut(s) 322, 485, 1180
Sau3AI GATC 4 cut(s) 176, 228, 276, 499
Sau96I GGNCC 3 cut(s) 201, 666, 1048
ScaI AGTACT 2 cut(s) 798, 981
SchI GAGTC 1 cut(s) 1017
ScrFI CCNGG 4 cut(s) 174, 199, 226, 867
SduI GDGCHC 2 cut(s) 714, 727
SfaNI GCATC 3 cut(s) 14, 315, 1099
SfcI CTRYAG 1 cut(s) 1122
SfuI TTCGAA 1 cut(s) 354
SinI GGWCC 1 cut(s) 201
SmiMI CAYNNNNRTG 1 cut(s) 839
SmlI CTYRAG 1 cut(s) 1052
SmoI CTYRAG 1 cut(s) 1052
Sse9I AATT 4 cut(s) 158, 292, 878, 1164
SsiI CCGC 7 cut(s) 319, 322, 347, 360, 484, 504, 1179
SspMI CTAG 2 cut(s) 363, 900
StyD4I CCNGG 4 cut(s) 172, 197, 224, 865
StyI CCWWGG 1 cut(s) 928
TaaI ACNGT 1 cut(s) 572
TaiI ACGT 2 cut(s) 1193, 1202
TaqI TCGA 4 cut(s) 8, 156, 354, 464
TasI AATT 4 cut(s) 158, 292, 878, 1164
TatI WGTACW 4 cut(s) 378, 522, 796, 979
TauI GCSGC 3 cut(s) 324, 487, 1182
TfiI GAWTC 4 cut(s) 410, 608, 671, 1030
TscAI CASTG 2 cut(s) 719, 1163
TseFI GTSAC 1 cut(s) 917
Tsp45I GTSAC 1 cut(s) 917
TspGWI ACGGA 2 cut(s) 118, 203
TspRI CASTG 2 cut(s) 719, 1163
Van91I CCANNNNNTGG 8 cut(s) 1075, 1256, 1357, 1458, 1559, 1660, 1761, 1862
VpaK11BI GGWCC 1 cut(s) 201
XagI CCTNNNNNAGG 1 cut(s) 1043
XapI RAATTY 2 cut(s) 158, 878
XspI CTAG 2 cut(s) 363, 900
ZrmI AGTACT 2 cut(s) 798, 981
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.