Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0003034

Physical Location & Seq

Genomic Coordinates Reverse (-)

14112430 .. 14114581

Gene Structure 2152 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g10660.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

ATGGAATTGCATCTCCAGCGGCAAATCCAACGGTCGGGAACTACTCAGATGGAGATGGAAGCCCAAGGGTTGATTGATCTACCGCCGTTCCATCCGATTAGGTTTCTGAAGATGTACAGAGACACCAGCATTGGGTTCGTTGGTGATTCATTGAACAGAAATATGTTTGTTTCGCTTTTCTGTTCTCTAAAACGAGTGTCAAGTGAAGTGAAGAAGTGGCGACCAGCTGGTGCTGATCGCGGGTTTACATTTCTTCAGTCTAATCTCACCCTTGCATATCATCGAACAAATCTTTTGGCACGTTATGGTAGGTGGTCAGCCGATGCTAATGGTGGGGTGCTGGAATCTCTTGGATATAAGGAGGGTTATAGAGTTGATGTTGACATTCCAGACGGCACATGGGCAGAAGCTCTAAGCTTTCATGACATTCTGATCTTTAACACGGGGCACTGGTGGTGGGCTCCTTCAAAGTTTGACCCGACAAAGTCACCCATGCTTTTCTTTGAAAAGGGTCGTCCAGTGGTTCCTCCAGTACTCCCTGATGTCGGCCTTGATATGGTTTTGAAGCACATGGTAATGCTCATGGAGAACAGAACGAAAGCAGGTGCAATCAAATTTTTTCGTACTCAGTCACCTAGACATTTTGAAGGGGGTGACTGGGACCAAGGTGGCTCTTGTAATCGGCTAAATCCTTTATTGGTAGAGCAGGTCGAAGATCTCTCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0008150 GO:0008374 GO:0009987 GO:0012505 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071554

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

242

Amino Acids

27.54

Weight (kDa)

7.83

Isoelectric Point (pI)

33.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003034)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G14530
fragaria_vesca	FvH4_2g02780 FvH4_2g02780 FvH4_2g02780 FvH4_2g02780 FvH4_2g02780 FvH4_2g02780 FvH4_2g02780 FvH4_2g02780
malus_domestica	MD10G1114100.v1.1
prunus_persica	Prupe.8G155600_v2.0.a1
pyrus_communis	pycom05g10660 pycom10g09850
rosa_chinensis	RchiOBHm_Chr6g0247241 RchiOBHm_Chr6g0247271
rosa_laevigata	RLG00000034791 RLG00000034793
rosa_multiflora	Rmu_co8250203.1_g000001 Rmu_sc0000745.1_g000038 Rmu_sc0000745.1_g000042 Rmu_sc0003226.1_g000010 Rmu_sc0003226.1_g000047 Rmu_sc0004368.1_g000009 Rmu_sc0004368.1_g000017
rosa_roxburghii	Rroxscaffold_180G00433570 Rroxscaffold_7G00214220
rosa_rugosa	Rorug05G0524400
rosa_samantha	Rh6AG038700 Rh6AG039700 Rh6BG033700 Rh6BG034000 Rh6BG034700 Rh6BG034900 Rh6CG034400 Rh6DG032000
rosa_wichuraiana	Rw6G003340 Rw6G003370 Rw6G003420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	593
Acc36I	ACCTGC	2 cut(s)	593, 697
AccII	CGCG	1 cut(s)	240
AciI	CCGC	3 cut(s)	19, 83, 240
AcsI	RAATTY	1 cut(s)	614
AcuI	CTGAAG	2 cut(s)	128, 239
AfaI	GTAC	3 cut(s)	116, 534, 625
AfiI	CCNNNNNNNGG	4 cut(s)	34, 132, 545, 556
AgsI	TTSAA	5 cut(s)	154, 468, 506, 565, 647
AluBI	AGCT	3 cut(s)	227, 410, 417
AluI	AGCT	3 cut(s)	227, 410, 417
Alw26I	GTCTC	1 cut(s)	114
AoxI	GGCC	1 cut(s)	547
ApoI	RAATTY	1 cut(s)	614
AspS9I	GGNCC	1 cut(s)	661
AsuHPI	GGTGA	5 cut(s)	155, 259, 480, 624, 665
AvaII	GGWCC	1 cut(s)	661
BaeGI	GKGCMC	1 cut(s)	450
BanII	GRGCYC	1 cut(s)	463
BccI	CCATC	3 cut(s)	43, 49, 99
BceAI	ACGGC	2 cut(s)	70, 409
BcgI	CGANNNNNNTGC	2 cut(s)	118, 152
BcoDI	GTCTC	1 cut(s)	114
BfaI	CTAG	1 cut(s)	636
BfuAI	ACCTGC	2 cut(s)	593, 697
BglII	AGATCT	1 cut(s)	715
BisI	GCNGC	1 cut(s)	20
BlsI	GCNGC	1 cut(s)	21
BmcAI	AGTACT	1 cut(s)	534
Bme18I	GGWCC	1 cut(s)	661
BmgT120I	GGNCC	1 cut(s)	661
BmiI	GGNNCC	3 cut(s)	462, 525, 662
BmrI	ACTGGG	1 cut(s)	667
BmsI	GCATC	2 cut(s)	19, 313
BmuI	ACTGGG	1 cut(s)	667
BpmI	CTGGAG	1 cut(s)	513
BsaJI	CCNNGG	2 cut(s)	64, 664
Bsc4I	CCNNNNNNNGG	4 cut(s)	34, 132, 545, 556
Bse1I	ACTGG	4 cut(s)	455, 518, 530, 662
BseDI	CCNNGG	2 cut(s)	64, 664
BseGI	GGATG	1 cut(s)	91
BseLI	CCNNNNNNNGG	4 cut(s)	34, 132, 545, 556
BseMII	CTCAG	2 cut(s)	59, 641
BseNI	ACTGG	4 cut(s)	455, 518, 530, 662
BseSI	GKGCMC	1 cut(s)	450
Bsh1236I	CGCG	1 cut(s)	240
Bsh1285I	CGRYCG	1 cut(s)	35
BshFI	GGCC	1 cut(s)	549
BsiEI	CGRYCG	1 cut(s)	35
BslFI	GGGAC	1 cut(s)	674
BslI	CCNNNNNNNGG	4 cut(s)	34, 132, 545, 556
BsmAI	GTCTC	1 cut(s)	114
BsmFI	GGGAC	1 cut(s)	674
BsnI	GGCC	1 cut(s)	549
Bsp1286I	GDGCHC	2 cut(s)	450, 463
Bsp1407I	TGTACA	1 cut(s)	114
Bsp143I	GATC	4 cut(s)	76, 235, 432, 715
BspACI	CCGC	3 cut(s)	19, 83, 240
BspANI	GGCC	1 cut(s)	549
BspCNI	CTCAG	2 cut(s)	58, 640
BspFNI	CGCG	1 cut(s)	240
BspHI	TCATGA	1 cut(s)	421
BspLI	GGNNCC	3 cut(s)	462, 525, 662
BspMI	ACCTGC	2 cut(s)	593, 697
BsrGI	TGTACA	1 cut(s)	114
BsrI	ACTGG	4 cut(s)	455, 518, 530, 662
BssECI	CCNNGG	2 cut(s)	64, 664
BssMI	GATC	4 cut(s)	76, 235, 432, 715
BssT1I	CCWWGG	2 cut(s)	64, 664
Bst4CI	ACNGT	1 cut(s)	33
BstAUI	TGTACA	1 cut(s)	114
BstDEI	CTNAG	3 cut(s)	45, 413, 627
BstF5I	GGATG	1 cut(s)	91
BstFNI	CGCG	1 cut(s)	240
BstKTI	GATC	4 cut(s)	79, 238, 435, 718
BstMAI	GTCTC	1 cut(s)	114
BstMBI	GATC	4 cut(s)	76, 235, 432, 715
BstMCI	CGRYCG	1 cut(s)	35
BstMWI	GCNNNNNNNGC	1 cut(s)	16
BstSLI	GKGCMC	1 cut(s)	450
BstUI	CGCG	1 cut(s)	240
BstX2I	RGATCY	1 cut(s)	715
BstYI	RGATCY	1 cut(s)	715
BsuRI	GGCC	1 cut(s)	549
BtsCI	GGATG	1 cut(s)	91
BtsIMutI	CAGTG	2 cut(s)	448, 525
BveI	ACCTGC	2 cut(s)	593, 697
CciI	TCATGA	1 cut(s)	421
Cfr13I	GGNCC	1 cut(s)	661
Csp6I	GTAC	3 cut(s)	115, 533, 624
CviAII	CATG	5 cut(s)	399, 422, 493, 571, 583
CviJI	RGCY	9 cut(s)	62, 227, 320, 410, 417, 461, 549, 672, 685
CviKI_1	RGCY	9 cut(s)	62, 227, 320, 410, 417, 461, 549, 672, 685
CviQI	GTAC	3 cut(s)	115, 533, 624
DdeI	CTNAG	3 cut(s)	45, 413, 627
DpnI	GATC	4 cut(s)	78, 237, 434, 717
DpnII	GATC	4 cut(s)	76, 235, 432, 715
Eco130I	CCWWGG	2 cut(s)	64, 664
Eco24I	GRGCYC	1 cut(s)	463
Eco47I	GGWCC	1 cut(s)	661
Eco57I	CTGAAG	2 cut(s)	128, 239
EcoT14I	CCWWGG	2 cut(s)	64, 664
EcoT38I	GRGCYC	1 cut(s)	463
ErhI	CCWWGG	2 cut(s)	64, 664
FaeI	CATG	5 cut(s)	402, 425, 496, 574, 586
FaqI	GGGAC	1 cut(s)	674
FatI	CATG	5 cut(s)	398, 421, 492, 570, 582
FauI	CCCGC	1 cut(s)	233
Fnu4HI	GCNGC	1 cut(s)	20
FokI	GGATG	1 cut(s)	78
FriOI	GRGCYC	1 cut(s)	463
Fsp4HI	GCNGC	1 cut(s)	20
FspBI	CTAG	1 cut(s)	636
GluI	GCNGC	1 cut(s)	20
GsuI	CTGGAG	1 cut(s)	513
HaeIII	GGCC	1 cut(s)	549
Hin1II	CATG	5 cut(s)	402, 425, 496, 574, 586
HincII	GTYRAC	1 cut(s)	382
HindII	GTYRAC	1 cut(s)	382
HindIII	AAGCTT	1 cut(s)	415
HinfI	GANTC	2 cut(s)	146, 344
HphI	GGTGA	5 cut(s)	155, 259, 480, 624, 665
Hpy166II	GTNNAC	2 cut(s)	246, 382
Hpy188I	TCNGA	4 cut(s)	48, 96, 108, 432
Hpy188III	TCNNGA	3 cut(s)	36, 389, 422
Hpy8I	GTNNAC	2 cut(s)	246, 382
HpyAV	CCTTC	2 cut(s)	474, 641
HpyCH4III	ACNGT	1 cut(s)	33
HpyCH4IV	ACGT	1 cut(s)	301
HpyCH4V	TGCA	3 cut(s)	10, 275, 608
HpyF10VI	GCNNNNNNNGC	1 cut(s)	16
HpyF3I	CTNAG	3 cut(s)	45, 413, 627
HpySE526I	ACGT	1 cut(s)	301
Hsp92II	CATG	5 cut(s)	402, 425, 496, 574, 586
Kzo9I	GATC	4 cut(s)	76, 235, 432, 715
LmnI	GCTCC	1 cut(s)	466
LweI	GCATC	2 cut(s)	19, 313
MaeI	CTAG	1 cut(s)	636
MaeII	ACGT	1 cut(s)	301
MaeIII	GTNAC	3 cut(s)	486, 630, 653
MalI	GATC	4 cut(s)	78, 237, 434, 717
MboI	GATC	4 cut(s)	76, 235, 432, 715
MboII	GAAGA	4 cut(s)	121, 223, 245, 725
MflI	RGATCY	1 cut(s)	715
MhlI	GDGCHC	2 cut(s)	450, 463
MluCI	AATT	2 cut(s)	5, 614
MmeI	TCCRAC	1 cut(s)	52
MnlI	CCTC	2 cut(s)	355, 537
MseI	TTAA	1 cut(s)	438
MslI	CAYNNNNRTG	1 cut(s)	575
MspA1I	CMGCKG	2 cut(s)	19, 227
MvnI	CGCG	1 cut(s)	240
MwoI	GCNNNNNNNGC	1 cut(s)	16
NdeII	GATC	4 cut(s)	76, 235, 432, 715
NlaIII	CATG	5 cut(s)	402, 425, 496, 574, 586
NlaIV	GGNNCC	3 cut(s)	462, 525, 662
NmuCI	GTSAC	3 cut(s)	486, 630, 653
PagI	TCATGA	1 cut(s)	421
PaqCI	CACCTGC	1 cut(s)	593
PfeI	GAWTC	2 cut(s)	146, 344
PflFI	GACNNNGTC	1 cut(s)	484
PkrI	GCNGC	1 cut(s)	21
PspN4I	GGNNCC	3 cut(s)	462, 525, 662
PspPI	GGNCC	1 cut(s)	661
PsuI	RGATCY	1 cut(s)	715
PsyI	GACNNNGTC	1 cut(s)	484
PvuII	CAGCTG	1 cut(s)	227
RsaI	GTAC	3 cut(s)	116, 534, 625
RsaNI	GTAC	3 cut(s)	115, 533, 624
RseI	CAYNNNNRTG	1 cut(s)	575
SaqAI	TTAA	1 cut(s)	438
SatI	GCNGC	1 cut(s)	20
Sau3AI	GATC	4 cut(s)	76, 235, 432, 715
Sau96I	GGNCC	1 cut(s)	661
ScaI	AGTACT	1 cut(s)	534
SduI	GDGCHC	2 cut(s)	450, 463
SfaNI	GCATC	2 cut(s)	19, 313
SinI	GGWCC	1 cut(s)	661
SmiMI	CAYNNNNRTG	1 cut(s)	575
Sse9I	AATT	2 cut(s)	5, 614
SsiI	CCGC	3 cut(s)	19, 83, 240
SspMI	CTAG	1 cut(s)	636
StyI	CCWWGG	2 cut(s)	64, 664
TaaI	ACNGT	1 cut(s)	33
TaiI	ACGT	1 cut(s)	304
TaqI	TCGA	2 cut(s)	283, 711
TasI	AATT	2 cut(s)	5, 614
TatI	WGTACW	2 cut(s)	114, 532
TauI	GCSGC	1 cut(s)	22
TfiI	GAWTC	2 cut(s)	146, 344
Tru1I	TTAA	1 cut(s)	438
Tru9I	TTAA	1 cut(s)	438
TscAI	CASTG	2 cut(s)	455, 525
TseFI	GTSAC	3 cut(s)	486, 630, 653
Tsp45I	GTSAC	3 cut(s)	486, 630, 653
TspDTI	ATGAA	2 cut(s)	138, 410
TspRI	CASTG	2 cut(s)	455, 525
Tth111I	GACNNNGTC	1 cut(s)	484
VpaK11BI	GGWCC	1 cut(s)	661
XapI	RAATTY	1 cut(s)	614
XcmI	CCANNNNNNNNNTGG	1 cut(s)	396
XspI	CTAG	1 cut(s)	636
ZrmI	AGTACT	1 cut(s)	534

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.