RLG00000034793

Protein trichome birefringence-like 13

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
Physical Location & Seq
Forward (+)
54662824 .. 54665298
2475 bp
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UTR
Exon/CDS
Intron
RLM00000034793

Sequence Viewer

Length: 1281 bp
ATGGCATCATCGAGAGACCTCTCTCACTTGCCAAACCAGACAAAGAAAGTCCCTTTCTTCTTACCTCTCCTCTCCCTCCTCTGCTTCATTTCCATCTTCGCCCTTCTCTCTTACATTAGAAACACATCCTCCGTTCCCTCCCAGCCTCACAGCTCCCTCGAATTCCGGAAACCCCCCGGATCCGACCCGAAGGAGCCGGCCGCCGGGTCCTGCGACTACTCCGATGGAACCTGGATCTACGACCCGAATGCCTCTCCCAAGTACGACAACACCTGCAAGGAGATCTTCAAGGGCTGGAATTGCATTTCCAGCAACAAATCCAACGGCCGCGAACTCCTCAAGTGGAGGTGGAAGCCTAAGCACTGTGATCTCCCGCCGTTCGATCCCGCTAGGTTTCTTCAGATGTACAGAAACACCAGCATTGGGTTTATTGGTGATTCCTTGAACCGGAATATGTTTGTTTCGCTGCTCTGTTCGTTGAAACGCGTGTCGAGTCAAGTCAAGAAGTGGCGGCCAGTTGGTGCTGATCGCGGGTTCACATTTCTTCAGTATAATGTTACGCTTGCGTATCATCGGACAAATCTTTTGGCTCGTTACAGTAGGTGGTCAGCCAATTCTAATGGTGGCGTGCTGGAATCTCTTGGATATAAAGAAGGTTATAGAGTTGATGTTGACATTCCGGTTGACACATGGGCAGAATCTGTAAGCTTTCATGACATTCTGATCTTCAACACAGGGCACTGGTATTGGGCTCCTGCAAAGTTTGACCCTATGAAGTCGCCTTTGCTTTTCTTTGAAAATGGTCAGCCTGTGGTTCCTCCAGTACTTCCTGATGTTGGCCTCGATATGGTTATGAAGCACATGGTAATGTTTGTGGAGAAGAGACTGAAGCCTGGTGCAATCAAATTCTTTCGTGCTCAATCACCTAGACATTTTGAAGGAGGTGACTGGAACCAAGGTGGTTCTTGTAACCGGCAAAACCCTTTGTCGCCAGAGCAGGTTGAAGAACTCTTCTCATTGAAGAATAATGGAACAAATGTAGAGGCACGACTTGTGAATCAACACCTTTACAATGCCCTTGAGGGGTCAGGTTTCCATATTTTGGACATAACCCACCTGAGTGAGTTCAGAGCAGATGCTCATCCATCTGCCGCAGGTGGGAAGATACACGATGATTGTATGCACTGGTGCTTGCCAGGAATAACAGATACTTGGAATGACTTGTTCATAGCACAGTTAAATAATGTTAGATTTAGAACAAAAATAAATCTTGTGCGTTGA

Protein Analysis

427

Amino Acids

48.46

Weight (kDa)

8.93

Isoelectric Point (pI)

40.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMR5N PF14416 70 - 123 1.2e-14 PMR5 N terminal Domain
PC-Esterase PF13839 124 - 411 2.8e-68 GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 281, 1145
Acc36I ACCTGC 3 cut(s) 281, 988, 1145
AccB7I CCANNNNNTGG 1 cut(s) 1102
AccII CGCG 3 cut(s) 330, 486, 531
AccIII TCCGGA 1 cut(s) 165
AciI CCGC 7 cut(s) 201, 328, 374, 387, 511, 531, 1152
AclWI GGATC 4 cut(s) 174, 187, 242, 377
AcoI YGGCCR 3 cut(s) 198, 325, 512
AcsI RAATTY 2 cut(s) 161, 905
AcuI CTGAAG 3 cut(s) 383, 530, 908
AfaI GTAC 3 cut(s) 263, 407, 825
AfiI CCNNNNNNNGG 8 cut(s) 203, 423, 447, 836, 847, 1083, 1102, 1158
AflIII ACRYGT 1 cut(s) 484
AgsI TTSAA 8 cut(s) 289, 445, 481, 730, 797, 938, 1004, 1021
AjnI CCWGG 3 cut(s) 230, 892, 1195
AleI CACNNNNGTG 1 cut(s) 1119
AluBI AGCT 2 cut(s) 153, 708
AluI AGCT 2 cut(s) 153, 708
Alw21I GWGCWC 1 cut(s) 919
Alw26I GTCTC 2 cut(s) 9, 877
AlwI GGATC 4 cut(s) 174, 187, 242, 377
AlwNI CAGNNNCTG 1 cut(s) 701
Aor13HI TCCGGA 1 cut(s) 165
AoxI GGCC 4 cut(s) 198, 325, 512, 838
ApeKI GCWGC 1 cut(s) 466
ApoI RAATTY 2 cut(s) 161, 905
ArsI GACNNNNNNTTYG 2 cut(s) 568, 600
AspS9I GGNCC 1 cut(s) 207
AsuC2I CCSGG 2 cut(s) 177, 205
AsuHPI GGTGA 3 cut(s) 446, 915, 956
AvaII GGWCC 1 cut(s) 207
BaeGI GKGCMC 1 cut(s) 741
BamHI GGATCC 1 cut(s) 179
BanII GRGCYC 1 cut(s) 754
Bbv12I GWGCWC 1 cut(s) 919
BbvI GCAGC 1 cut(s) 453
BccI CCATC 3 cut(s) 101, 218, 1153
BceAI ACGGC 2 cut(s) 340, 361
BcgI CGANNNNNNTGC 2 cut(s) 230, 264
BciT130I CCWGG 3 cut(s) 232, 894, 1197
BcnI CCSGG 2 cut(s) 177, 205
BcoDI GTCTC 2 cut(s) 9, 877
BfaI CTAG 2 cut(s) 390, 927
BfuAI ACCTGC 3 cut(s) 281, 988, 1145
BglII AGATCT 1 cut(s) 282
BisI GCNGC 5 cut(s) 201, 328, 467, 512, 1152
BlsI GCNGC 5 cut(s) 202, 329, 468, 513, 1153
BmcAI AGTACT 1 cut(s) 825
Bme1390I CCNGG 5 cut(s) 177, 205, 232, 894, 1197
Bme18I GGWCC 1 cut(s) 207
BmgT120I GGNCC 1 cut(s) 207
BmiI GGNNCC 7 cut(s) 181, 195, 208, 229, 753, 816, 953
BmrFI CCNGG 5 cut(s) 177, 205, 232, 894, 1197
BmsI GCATC 2 cut(s) 14, 1126
BpmI CTGGAG 1 cut(s) 804
Bpu10I CCTNAGC 1 cut(s) 357
BpuEI CTTGAG 2 cut(s) 323, 1100
BpuMI CCSGG 2 cut(s) 177, 205
BsaBI GATNNNNATC 1 cut(s) 1140
BsaI GGTCTC 1 cut(s) 9
BsaJI CCNNGG 2 cut(s) 175, 955
BsaWI WCCGGW 3 cut(s) 165, 447, 679
BsaXI ACNNNNNCTCC 2 cut(s) 113, 143
Bsc4I CCNNNNNNNGG 8 cut(s) 203, 423, 447, 836, 847, 1083, 1102, 1158
Bse118I RCCGGY 2 cut(s) 196, 972
Bse1I ACTGG 5 cut(s) 515, 746, 821, 953, 1190
Bse8I GATNNNNATC 1 cut(s) 1140
BseAI TCCGGA 1 cut(s) 165
BseBI CCWGG 3 cut(s) 232, 894, 1197
BseDI CCNNGG 2 cut(s) 175, 955
BseGI GGATG 2 cut(s) 125, 1141
BseJI GATNNNNATC 1 cut(s) 1140
BseLI CCNNNNNNNGG 8 cut(s) 203, 423, 447, 836, 847, 1083, 1102, 1158
BseMII CTCAG 1 cut(s) 1109
BseNI ACTGG 5 cut(s) 515, 746, 821, 953, 1190
BseRI GAGGAG 3 cut(s) 59, 68, 326
BseSI GKGCMC 1 cut(s) 741
BseX3I CGGCCG 2 cut(s) 198, 325
BseXI GCAGC 1 cut(s) 453
BseYI CCCAGC 1 cut(s) 141
Bsh1236I CGCG 3 cut(s) 330, 486, 531
Bsh1285I CGRYCG 2 cut(s) 201, 328
BshFI GGCC 4 cut(s) 200, 327, 514, 840
BsiEI CGRYCG 2 cut(s) 201, 328
BsiHKAI GWGCWC 1 cut(s) 919
BsiSI CCGG 7 cut(s) 166, 177, 197, 204, 448, 680, 973
BslFI GGGAC 1 cut(s) 35
BslI CCNNNNNNNGG 8 cut(s) 203, 423, 447, 836, 847, 1083, 1102, 1158
BsmAI GTCTC 2 cut(s) 9, 877
BsmFI GGGAC 1 cut(s) 35
BsmI GAATGC 1 cut(s) 253
BsnI GGCC 4 cut(s) 200, 327, 514, 840
Bso31I GGTCTC 1 cut(s) 9
Bsp1286I GDGCHC 3 cut(s) 741, 754, 919
Bsp13I TCCGGA 1 cut(s) 165
Bsp1407I TGTACA 1 cut(s) 405
Bsp143I GATC 7 cut(s) 179, 234, 282, 367, 382, 526, 723
BspACI CCGC 7 cut(s) 201, 328, 374, 387, 511, 531, 1152
BspANI GGCC 4 cut(s) 200, 327, 514, 840
BspCNI CTCAG 1 cut(s) 1110
BspEI TCCGGA 1 cut(s) 165
BspFNI CGCG 3 cut(s) 330, 486, 531
BspHI TCATGA 1 cut(s) 712
BspLI GGNNCC 7 cut(s) 181, 195, 208, 229, 753, 816, 953
BspMI ACCTGC 3 cut(s) 281, 988, 1145
BspPI GGATC 4 cut(s) 174, 187, 242, 377
BspTNI GGTCTC 1 cut(s) 9
BsrFI RCCGGY 2 cut(s) 196, 972
BsrGI TGTACA 1 cut(s) 405
BsrI ACTGG 5 cut(s) 515, 746, 821, 953, 1190
BssAI RCCGGY 2 cut(s) 196, 972
BssECI CCNNGG 2 cut(s) 175, 955
BssMI GATC 7 cut(s) 179, 234, 282, 367, 382, 526, 723
BssT1I CCWWGG 1 cut(s) 955
Bst2UI CCWGG 3 cut(s) 232, 894, 1197
Bst4CI ACNGT 3 cut(s) 365, 599, 1236
Bst6I CTCTTC 2 cut(s) 875, 1016
BstAUI TGTACA 1 cut(s) 405
BstC8I GCNNGC 4 cut(s) 198, 564, 629, 1193
BstDEI CTNAG 2 cut(s) 357, 1118
BstF5I GGATG 2 cut(s) 125, 1141
BstFNI CGCG 3 cut(s) 330, 486, 531
BstKTI GATC 7 cut(s) 182, 237, 285, 370, 385, 529, 726
BstMAI GTCTC 2 cut(s) 9, 877
BstMBI GATC 7 cut(s) 179, 234, 282, 367, 382, 526, 723
BstMCI CGRYCG 2 cut(s) 201, 328
BstMWI GCNNNNNNNGC 2 cut(s) 300, 309
BstNI CCWGG 3 cut(s) 232, 894, 1197
BstSCI CCNGG 5 cut(s) 175, 203, 230, 892, 1195
BstSLI GKGCMC 1 cut(s) 741
BstUI CGCG 3 cut(s) 330, 486, 531
BstV1I GCAGC 1 cut(s) 453
BstX2I RGATCY 3 cut(s) 179, 234, 282
BstYI RGATCY 3 cut(s) 179, 234, 282
BstZI CGGCCG 2 cut(s) 198, 325
BsuRI GGCC 4 cut(s) 200, 327, 514, 840
BtsCI GGATG 2 cut(s) 125, 1141
BtsIMutI CAGTG 3 cut(s) 361, 739, 1183
BveI ACCTGC 3 cut(s) 281, 988, 1145
Cac8I GCNNGC 4 cut(s) 198, 564, 629, 1193
CaiI CAGNNNCTG 1 cut(s) 701
CciI TCATGA 1 cut(s) 712
Cfr10I RCCGGY 2 cut(s) 196, 972
Cfr13I GGNCC 1 cut(s) 207
Csp6I GTAC 3 cut(s) 262, 406, 824
CviAII CATG 3 cut(s) 690, 713, 862
CviQI GTAC 3 cut(s) 262, 406, 824
DdeI CTNAG 2 cut(s) 357, 1118
DpnI GATC 7 cut(s) 181, 236, 284, 369, 384, 528, 725
DpnII GATC 7 cut(s) 179, 234, 282, 367, 382, 526, 723
EaeI YGGCCR 3 cut(s) 198, 325, 512
EagI CGGCCG 2 cut(s) 198, 325
Eam1104I CTCTTC 2 cut(s) 875, 1016
EarI CTCTTC 2 cut(s) 875, 1016
EclXI CGGCCG 2 cut(s) 198, 325
Eco130I CCWWGG 1 cut(s) 955
Eco24I GRGCYC 1 cut(s) 754
Eco31I GGTCTC 1 cut(s) 9
Eco47I GGWCC 1 cut(s) 207
Eco52I CGGCCG 2 cut(s) 198, 325
Eco57I CTGAAG 3 cut(s) 383, 530, 908
EcoO109I RGGNCCY 1 cut(s) 207
EcoRI GAATTC 1 cut(s) 161
EcoRII CCWGG 3 cut(s) 230, 892, 1195
EcoT14I CCWWGG 1 cut(s) 955
EcoT38I GRGCYC 1 cut(s) 754
ErhI CCWWGG 1 cut(s) 955
FaeI CATG 3 cut(s) 693, 716, 865
FalI AAGNNNNNCTT 2 cut(s) 269, 301
FaqI GGGAC 1 cut(s) 35
FatI CATG 3 cut(s) 689, 712, 861
FauI CCCGC 3 cut(s) 381, 394, 524
Fnu4HI GCNGC 5 cut(s) 201, 328, 467, 512, 1152
FokI GGATG 2 cut(s) 112, 1128
FriOI GRGCYC 1 cut(s) 754
Fsp4HI GCNGC 5 cut(s) 201, 328, 467, 512, 1152
FspBI CTAG 2 cut(s) 390, 927
GluI GCNGC 5 cut(s) 201, 328, 467, 512, 1152
GsaI CCCAGC 1 cut(s) 145
GsuI CTGGAG 1 cut(s) 804
HaeIII GGCC 4 cut(s) 200, 327, 514, 840
HapII CCGG 7 cut(s) 166, 177, 197, 204, 448, 680, 973
Hin1II CATG 3 cut(s) 693, 716, 865
HincII GTYRAC 2 cut(s) 673, 685
HindII GTYRAC 2 cut(s) 673, 685
HindIII AAGCTT 1 cut(s) 706
HinfI GANTC 5 cut(s) 437, 493, 635, 698, 1057
HpaII CCGG 7 cut(s) 166, 177, 197, 204, 448, 680, 973
HphI GGTGA 3 cut(s) 446, 915, 956
Hpy166II GTNNAC 3 cut(s) 537, 673, 685
Hpy188I TCNGA 6 cut(s) 184, 223, 402, 576, 723, 1130
Hpy188III TCNNGA 5 cut(s) 12, 166, 502, 713, 830
Hpy8I GTNNAC 3 cut(s) 537, 673, 685
HpyAV CCTTC 4 cut(s) 113, 184, 647, 932
HpyCH4III ACNGT 3 cut(s) 365, 599, 1236
HpyCH4V TGCA 5 cut(s) 276, 303, 758, 899, 1183
HpyF10VI GCNNNNNNNGC 2 cut(s) 300, 309
HpyF3I CTNAG 2 cut(s) 357, 1118
Hsp92II CATG 3 cut(s) 693, 716, 865
Kpn2I TCCGGA 1 cut(s) 165
KroI GCCGGC 1 cut(s) 196
KroNI GCCGGC 1 cut(s) 198
Kzo9I GATC 7 cut(s) 179, 234, 282, 367, 382, 526, 723
LmnI GCTCC 3 cut(s) 158, 193, 757
Lsp1109I GCAGC 1 cut(s) 453
LweI GCATC 2 cut(s) 14, 1126
MaeI CTAG 2 cut(s) 390, 927
MaeIII GTNAC 4 cut(s) 556, 593, 944, 968
MalI GATC 7 cut(s) 181, 236, 284, 369, 384, 528, 725
MboI GATC 7 cut(s) 179, 234, 282, 367, 382, 526, 723
MflI RGATCY 3 cut(s) 179, 234, 282
MhlI GDGCHC 3 cut(s) 741, 754, 919
MluCI AATT 4 cut(s) 161, 298, 613, 905
MluI ACGCGT 1 cut(s) 484
MlyI GAGTC 1 cut(s) 502
MmeI TCCRAC 2 cut(s) 207, 345
MroI TCCGGA 1 cut(s) 165
MroNI GCCGGC 1 cut(s) 196
MseI TTAA 1 cut(s) 1238
MslI CAYNNNNRTG 2 cut(s) 866, 1119
MspI CCGG 7 cut(s) 166, 177, 197, 204, 448, 680, 973
MspR9I CCNGG 5 cut(s) 177, 205, 232, 894, 1197
Mva1269I GAATGC 1 cut(s) 253
MvaI CCWGG 3 cut(s) 232, 894, 1197
MvnI CGCG 3 cut(s) 330, 486, 531
MwoI GCNNNNNNNGC 2 cut(s) 300, 309
NaeI GCCGGC 1 cut(s) 198
NciI CCSGG 2 cut(s) 177, 205
NdeII GATC 7 cut(s) 179, 234, 282, 367, 382, 526, 723
NgoMIV GCCGGC 1 cut(s) 196
NlaIII CATG 3 cut(s) 693, 716, 865
NlaIV GGNNCC 7 cut(s) 181, 195, 208, 229, 753, 816, 953
NmuCI GTSAC 1 cut(s) 944
OliI CACNNNNGTG 1 cut(s) 1119
PagI TCATGA 1 cut(s) 712
PaqCI CACCTGC 2 cut(s) 281, 1145
PctI GAATGC 1 cut(s) 253
PdiI GCCGGC 1 cut(s) 198
PfeI GAWTC 4 cut(s) 437, 635, 698, 1057
PflMI CCANNNNNTGG 1 cut(s) 1102
PkrI GCNGC 5 cut(s) 202, 329, 468, 513, 1153
PleI GAGTC 1 cut(s) 501
PpsI GAGTC 1 cut(s) 501
PpuMI RGGWCCY 1 cut(s) 207
Psp5II RGGWCCY 1 cut(s) 207
Psp6I CCWGG 3 cut(s) 230, 892, 1195
PspFI CCCAGC 1 cut(s) 141
PspGI CCWGG 3 cut(s) 230, 892, 1195
PspN4I GGNNCC 7 cut(s) 181, 195, 208, 229, 753, 816, 953
PspPI GGNCC 1 cut(s) 207
PspPPI RGGWCCY 1 cut(s) 207
PstNI CAGNNNCTG 1 cut(s) 701
PsuI RGATCY 3 cut(s) 179, 234, 282
RsaI GTAC 3 cut(s) 263, 407, 825
RsaNI GTAC 3 cut(s) 262, 406, 824
RseI CAYNNNNRTG 2 cut(s) 866, 1119
SaqAI TTAA 1 cut(s) 1238
SatI GCNGC 5 cut(s) 201, 328, 467, 512, 1152
Sau3AI GATC 7 cut(s) 179, 234, 282, 367, 382, 526, 723
Sau96I GGNCC 1 cut(s) 207
ScaI AGTACT 1 cut(s) 825
SchI GAGTC 1 cut(s) 502
ScrFI CCNGG 5 cut(s) 177, 205, 232, 894, 1197
SduI GDGCHC 3 cut(s) 741, 754, 919
SfaNI GCATC 2 cut(s) 14, 1126
SinI GGWCC 1 cut(s) 207
SmiMI CAYNNNNRTG 2 cut(s) 866, 1119
SmlI CTYRAG 2 cut(s) 338, 1079
SmoI CTYRAG 2 cut(s) 338, 1079
Sse9I AATT 4 cut(s) 161, 298, 613, 905
SsiI CCGC 7 cut(s) 201, 328, 374, 387, 511, 531, 1152
SspMI CTAG 2 cut(s) 390, 927
StyD4I CCNGG 5 cut(s) 175, 203, 230, 892, 1195
StyI CCWWGG 1 cut(s) 955
TaaI ACNGT 3 cut(s) 365, 599, 1236
TaqI TCGA 5 cut(s) 11, 159, 381, 491, 843
TasI AATT 4 cut(s) 161, 298, 613, 905
TatI WGTACW 2 cut(s) 405, 823
TauI GCSGC 4 cut(s) 203, 330, 514, 1154
TfiI GAWTC 4 cut(s) 437, 635, 698, 1057
Tru1I TTAA 1 cut(s) 1238
Tru9I TTAA 1 cut(s) 1238
TscAI CASTG 3 cut(s) 368, 746, 1190
TseFI GTSAC 1 cut(s) 944
TseI GCWGC 1 cut(s) 466
Tsp45I GTSAC 1 cut(s) 944
TspDTI ATGAA 5 cut(s) 76, 701, 788, 869, 1216
TspGWI ACGGA 1 cut(s) 121
TspRI CASTG 3 cut(s) 368, 746, 1190
Van91I CCANNNNNTGG 1 cut(s) 1102
VpaK11BI GGWCC 1 cut(s) 207
XapI RAATTY 2 cut(s) 161, 905
XspI CTAG 2 cut(s) 390, 927
ZrmI AGTACT 1 cut(s) 825
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.