Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003226.1

Orthogroup ID

OG0003034

Physical Location & Seq

Genomic Coordinates Forward (+)

210599 .. 215257

Gene Structure 4659 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003226.1_g000047.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 831 bp

atgaagctccttcataatctcaactaccgccttggcgttgtgacgtgggaagacatcgccatttttggtcttaatatcccaaagaccgcggttgtgatagctcttggacctcgagtgcttacccacaccacggagctaatttgggtgtcgggtctttttgacaactctcccttttgctcctatggcgactctacatttgagagcctgaaacggcttgctatggagagaaacagaatggaaactgagaaaaaggtggtgggtagtttgattgcgatgggaatcgggaaggaggtgggtagcaaggcctaccatgagggccgactcctggtcaactctagtggggcctccggcgaggtcttcggctaccacaaaagctattaccccggatccgacccgacggagccggccgggtcctgtgactaccccgatggaacctgcaaggagatcttcaagggctggaattgcatttccagcaacaaatccaacggccgcgaactcgtcaagtggaggtggaagcctaagcactgtgatctcccgccgttcgatccctctagaatatgtttcgctgttctgttcgctaaagtaaagaagtggcggccagttggtgctgaccgcgggttcacatttcttcagtacaatgttacgcttgcgtatcatcggacaaatcttttggctcgttacggtagatggtcagcgaattctattggtggcttactggaatctcttggatataaagaggggtatacagttgatgttgacattccggttgacacatgggccgaatctctaagctttcatgacattctgatattcaacacagggcagtggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0008150 GO:0008374 GO:0009987 GO:0012505 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071554

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

276

Amino Acids

30.99

Weight (kDa)

8.63

Isoelectric Point (pI)

30.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003034)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G14530
fragaria_vesca	FvH4_2g02780 FvH4_2g02780 FvH4_2g02780 FvH4_2g02780 FvH4_2g02780 FvH4_2g02780 FvH4_2g02780 FvH4_2g02780
malus_domestica	MD10G1114100.v1.1
prunus_persica	Prupe.8G155600_v2.0.a1
pyrus_communis	pycom05g10660 pycom10g09850
rosa_chinensis	RchiOBHm_Chr6g0247241 RchiOBHm_Chr6g0247271
rosa_laevigata	RLG00000034791 RLG00000034793
rosa_multiflora	Rmu_co8250203.1_g000001 Rmu_sc0000745.1_g000038 Rmu_sc0000745.1_g000042 Rmu_sc0003226.1_g000010 Rmu_sc0003226.1_g000047 Rmu_sc0004368.1_g000009 Rmu_sc0004368.1_g000017
rosa_roxburghii	Rroxscaffold_180G00433570 Rroxscaffold_7G00214220
rosa_rugosa	Rorug05G0524400
rosa_samantha	Rh6AG038700 Rh6AG039700 Rh6BG033700 Rh6BG034000 Rh6BG034700 Rh6BG034900 Rh6CG034400 Rh6DG032000
rosa_wichuraiana	Rw6G003340 Rw6G003370 Rw6G003420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	443
AccI	GTMKAC	1 cut(s)	743
AccII	CGCG	3 cut(s)	89, 492, 615
AciI	CCGC	8 cut(s)	28, 87, 89, 490, 536, 595, 613, 615
AclWI	GGATC	3 cut(s)	381, 394, 539
AcoI	YGGCCR	3 cut(s)	405, 487, 596
AcsI	RAATTY	1 cut(s)	697
AcuI	CTGAAG	1 cut(s)	614
AfaI	GTAC	1 cut(s)	635
AfiI	CCNNNNNNNGG	2 cut(s)	130, 325
AgsI	TTSAA	2 cut(s)	451, 814
AhdI	GACNNNNNGTC	1 cut(s)	326
AjiI	CACGTC	1 cut(s)	45
AjnI	CCWGG	1 cut(s)	324
AluBI	AGCT	5 cut(s)	7, 101, 136, 375, 792
AluI	AGCT	5 cut(s)	7, 101, 136, 375, 792
AlwI	GGATC	3 cut(s)	381, 394, 539
Ama87I	CYCGRG	1 cut(s)	111
AoxI	GGCC	7 cut(s)	303, 316, 342, 405, 487, 596, 777
ApoI	RAATTY	1 cut(s)	697
ArsI	GACNNNNNNTTYG	4 cut(s)	179, 211, 652, 684
AspS9I	GGNCC	5 cut(s)	107, 316, 342, 411, 777
AsuC2I	CCSGG	2 cut(s)	384, 409
AvaI	CYCGRG	1 cut(s)	111
AvaII	GGWCC	2 cut(s)	107, 411
BamHI	GGATCC	1 cut(s)	386
BbsI	GAAGAC	2 cut(s)	57, 349
BccI	CCATC	3 cut(s)	268, 422, 681
BceAI	ACGGC	3 cut(s)	227, 502, 523
BciT130I	CCWGG	1 cut(s)	326
BcnI	CCSGG	2 cut(s)	384, 409
BfaI	CTAG	2 cut(s)	336, 552
BfuAI	ACCTGC	1 cut(s)	443
BglII	AGATCT	1 cut(s)	444
BisI	GCNGC	2 cut(s)	490, 596
BlsI	GCNGC	2 cut(s)	491, 597
Bme1390I	CCNGG	3 cut(s)	326, 384, 409
Bme18I	GGWCC	2 cut(s)	107, 411
BmeRI	GACNNNNNGTC	1 cut(s)	326
BmeT110I	CYCGRG	1 cut(s)	111
BmgBI	CACGTC	1 cut(s)	45
BmgT120I	GGNCC	5 cut(s)	107, 316, 342, 411, 777
BmiI	GGNNCC	5 cut(s)	343, 388, 402, 412, 433
BmrFI	CCNGG	3 cut(s)	326, 384, 409
BpiI	GAAGAC	2 cut(s)	57, 349
Bpu10I	CCTNAGC	1 cut(s)	519
BpuMI	CCSGG	2 cut(s)	384, 409
BsaBI	GATNNNNATC	1 cut(s)	278
BsaJI	CCNNGG	5 cut(s)	31, 87, 129, 382, 613
BsaWI	WCCGGW	1 cut(s)	763
Bsc4I	CCNNNNNNNGG	2 cut(s)	130, 325
Bse118I	RCCGGY	1 cut(s)	403
Bse1I	ACTGG	2 cut(s)	599, 720
Bse8I	GATNNNNATC	1 cut(s)	278
BseBI	CCWGG	1 cut(s)	326
BseDI	CCNNGG	5 cut(s)	31, 87, 129, 382, 613
BseJI	GATNNNNATC	1 cut(s)	278
BseLI	CCNNNNNNNGG	2 cut(s)	130, 325
BseMII	CTCAG	1 cut(s)	234
BseNI	ACTGG	2 cut(s)	599, 720
BseX3I	CGGCCG	2 cut(s)	405, 487
Bsh1236I	CGCG	3 cut(s)	89, 492, 615
Bsh1285I	CGRYCG	2 cut(s)	408, 490
BshFI	GGCC	7 cut(s)	305, 318, 344, 407, 489, 598, 779
BsiEI	CGRYCG	2 cut(s)	408, 490
BsiHKCI	CYCGRG	1 cut(s)	111
BsiSI	CCGG	5 cut(s)	348, 384, 404, 408, 764
BslI	CCNNNNNNNGG	2 cut(s)	130, 325
BsnI	GGCC	7 cut(s)	305, 318, 344, 407, 489, 598, 779
BsoBI	CYCGRG	1 cut(s)	111
Bsp143I	GATC	4 cut(s)	386, 444, 529, 544
BspACI	CCGC	8 cut(s)	28, 87, 89, 490, 536, 595, 613, 615
BspANI	GGCC	7 cut(s)	305, 318, 344, 407, 489, 598, 779
BspCNI	CTCAG	1 cut(s)	235
BspFNI	CGCG	3 cut(s)	89, 492, 615
BspHI	TCATGA	1 cut(s)	796
BspLI	GGNNCC	5 cut(s)	343, 388, 402, 412, 433
BspMI	ACCTGC	1 cut(s)	443
BspPI	GGATC	3 cut(s)	381, 394, 539
BsrFI	RCCGGY	1 cut(s)	403
BsrI	ACTGG	2 cut(s)	599, 720
BssAI	RCCGGY	1 cut(s)	403
BssECI	CCNNGG	5 cut(s)	31, 87, 129, 382, 613
BssMI	GATC	4 cut(s)	386, 444, 529, 544
BssNAI	GTATAC	1 cut(s)	744
BssT1I	CCWWGG	1 cut(s)	31
Bst1107I	GTATAC	1 cut(s)	744
Bst2UI	CCWGG	1 cut(s)	326
Bst4CI	ACNGT	3 cut(s)	527, 683, 748
BstC8I	GCNNGC	3 cut(s)	216, 405, 648
BstDEI	CTNAG	3 cut(s)	243, 519, 788
BstDSI	CCRYGG	3 cut(s)	87, 129, 613
BstFNI	CGCG	3 cut(s)	89, 492, 615
BstKTI	GATC	4 cut(s)	389, 447, 532, 547
BstMBI	GATC	4 cut(s)	386, 444, 529, 544
BstMCI	CGRYCG	2 cut(s)	408, 490
BstMWI	GCNNNNNNNGC	3 cut(s)	183, 462, 471
BstNI	CCWGG	1 cut(s)	326
BstSCI	CCNGG	3 cut(s)	324, 382, 407
BstUI	CGCG	3 cut(s)	89, 492, 615
BstV2I	GAAGAC	2 cut(s)	57, 349
BstX2I	RGATCY	2 cut(s)	386, 444
BstYI	RGATCY	2 cut(s)	386, 444
BstZ17I	GTATAC	1 cut(s)	744
BstZI	CGGCCG	2 cut(s)	405, 487
BsuRI	GGCC	7 cut(s)	305, 318, 344, 407, 489, 598, 779
BtgI	CCRYGG	3 cut(s)	87, 129, 613
BtgZI	GCGATG	2 cut(s)	40, 287
BtrI	CACGTC	1 cut(s)	45
BtsI	GCAGTG	1 cut(s)	830
BtsIMutI	CAGTG	2 cut(s)	523, 830
BveI	ACCTGC	1 cut(s)	443
Cac8I	GCNNGC	3 cut(s)	216, 405, 648
CciI	TCATGA	1 cut(s)	796
Cfr10I	RCCGGY	1 cut(s)	403
Cfr13I	GGNCC	5 cut(s)	107, 316, 342, 411, 777
Cfr42I	CCGCGG	2 cut(s)	90, 616
Csp6I	GTAC	1 cut(s)	634
CspCI	CAANNNNNGTGG	2 cut(s)	319, 354
CviAII	CATG	3 cut(s)	311, 774, 797
CviQI	GTAC	1 cut(s)	634
DdeI	CTNAG	3 cut(s)	243, 519, 788
DpnI	GATC	4 cut(s)	388, 446, 531, 546
DpnII	GATC	4 cut(s)	386, 444, 529, 544
DriI	GACNNNNNGTC	1 cut(s)	326
EaeI	YGGCCR	3 cut(s)	405, 487, 596
EagI	CGGCCG	2 cut(s)	405, 487
Eam1105I	GACNNNNNGTC	1 cut(s)	326
EclXI	CGGCCG	2 cut(s)	405, 487
Eco130I	CCWWGG	1 cut(s)	31
Eco147I	AGGCCT	1 cut(s)	305
Eco47I	GGWCC	2 cut(s)	107, 411
Eco52I	CGGCCG	2 cut(s)	405, 487
Eco57I	CTGAAG	1 cut(s)	614
Eco88I	CYCGRG	1 cut(s)	111
EcoO109I	RGGNCCY	2 cut(s)	342, 411
EcoRI	GAATTC	1 cut(s)	697
EcoRII	CCWGG	1 cut(s)	324
EcoT14I	CCWWGG	1 cut(s)	31
ErhI	CCWWGG	1 cut(s)	31
FaeI	CATG	3 cut(s)	314, 777, 800
FaiI	YATR	9 cut(s)	15, 183, 221, 312, 559, 732, 744, 775, 798
FalI	AAGNNNNNCTT	2 cut(s)	431, 463
FatI	CATG	3 cut(s)	310, 773, 796
FauI	CCCGC	2 cut(s)	543, 608
FblI	GTMKAC	1 cut(s)	743
Fnu4HI	GCNGC	2 cut(s)	490, 596
Fsp4HI	GCNGC	2 cut(s)	490, 596
FspBI	CTAG	2 cut(s)	336, 552
GluI	GCNGC	2 cut(s)	490, 596
HaeIII	GGCC	7 cut(s)	305, 318, 344, 407, 489, 598, 779
HapII	CCGG	5 cut(s)	348, 384, 404, 408, 764
Hin1II	CATG	3 cut(s)	314, 777, 800
HincII	GTYRAC	3 cut(s)	331, 757, 769
HindII	GTYRAC	3 cut(s)	331, 757, 769
HindIII	AAGCTT	1 cut(s)	790
HinfI	GANTC	5 cut(s)	188, 279, 321, 719, 782
HpaII	CCGG	5 cut(s)	348, 384, 404, 408, 764
Hpy166II	GTNNAC	5 cut(s)	331, 621, 744, 757, 769
Hpy188I	TCNGA	3 cut(s)	391, 660, 807
Hpy188III	TCNNGA	3 cut(s)	283, 552, 797
Hpy8I	GTNNAC	5 cut(s)	331, 621, 744, 757, 769
Hpy99I	CGWCG	1 cut(s)	400
HpyAV	CCTTC	2 cut(s)	20, 280
HpyCH4III	ACNGT	3 cut(s)	527, 683, 748
HpyCH4IV	ACGT	1 cut(s)	44
HpyCH4V	TGCA	2 cut(s)	438, 465
HpyF10VI	GCNNNNNNNGC	3 cut(s)	183, 462, 471
HpyF3I	CTNAG	3 cut(s)	243, 519, 788
HpySE526I	ACGT	1 cut(s)	44
Hsp92II	CATG	3 cut(s)	314, 777, 800
KroI	GCCGGC	1 cut(s)	403
KroNI	GCCGGC	1 cut(s)	405
KspI	CCGCGG	2 cut(s)	90, 616
Kzo9I	GATC	4 cut(s)	386, 444, 529, 544
LmnI	GCTCC	4 cut(s)	12, 133, 182, 400
MaeI	CTAG	2 cut(s)	336, 552
MaeII	ACGT	1 cut(s)	44
MaeIII	GTNAC	4 cut(s)	40, 416, 640, 677
MalI	GATC	4 cut(s)	388, 446, 531, 546
MboI	GATC	4 cut(s)	386, 444, 529, 544
MboII	GAAGA	4 cut(s)	62, 349, 439, 620
MflI	RGATCY	2 cut(s)	386, 444
MluCI	AATT	3 cut(s)	138, 460, 697
MlyI	GAGTC	2 cut(s)	182, 315
MmeI	TCCRAC	2 cut(s)	414, 507
MnlI	CCTC	8 cut(s)	120, 283, 307, 346, 355, 501, 559, 730
MroNI	GCCGGC	1 cut(s)	403
MseI	TTAA	1 cut(s)	72
MspA1I	CMGCKG	2 cut(s)	89, 615
MspI	CCGG	5 cut(s)	348, 384, 404, 408, 764
MspR9I	CCNGG	3 cut(s)	326, 384, 409
MvaI	CCWGG	1 cut(s)	326
MvnI	CGCG	3 cut(s)	89, 492, 615
MwoI	GCNNNNNNNGC	3 cut(s)	183, 462, 471
NaeI	GCCGGC	1 cut(s)	405
NciI	CCSGG	2 cut(s)	384, 409
NdeII	GATC	4 cut(s)	386, 444, 529, 544
NgoMIV	GCCGGC	1 cut(s)	403
NlaIII	CATG	3 cut(s)	314, 777, 800
NlaIV	GGNNCC	5 cut(s)	343, 388, 402, 412, 433
NmuCI	GTSAC	2 cut(s)	40, 416
PaeR7I	CTCGAG	1 cut(s)	111
PagI	TCATGA	1 cut(s)	796
PceI	AGGCCT	1 cut(s)	305
PdiI	GCCGGC	1 cut(s)	405
PfeI	GAWTC	3 cut(s)	279, 719, 782
PkrI	GCNGC	2 cut(s)	491, 597
PleI	GAGTC	2 cut(s)	182, 315
PpsI	GAGTC	2 cut(s)	182, 315
PpuMI	RGGWCCY	1 cut(s)	411
Psp5II	RGGWCCY	1 cut(s)	411
Psp6I	CCWGG	1 cut(s)	324
PspGI	CCWGG	1 cut(s)	324
PspN4I	GGNNCC	5 cut(s)	343, 388, 402, 412, 433
PspPI	GGNCC	5 cut(s)	107, 316, 342, 411, 777
PspPPI	RGGWCCY	1 cut(s)	411
PspXI	VCTCGAGB	1 cut(s)	111
PsuI	RGATCY	2 cut(s)	386, 444
RsaI	GTAC	1 cut(s)	635
RsaNI	GTAC	1 cut(s)	634
SacII	CCGCGG	2 cut(s)	90, 616
SaqAI	TTAA	1 cut(s)	72
SatI	GCNGC	2 cut(s)	490, 596
Sau3AI	GATC	4 cut(s)	386, 444, 529, 544
Sau96I	GGNCC	5 cut(s)	107, 316, 342, 411, 777
SchI	GAGTC	2 cut(s)	182, 315
ScrFI	CCNGG	3 cut(s)	326, 384, 409
Sfr274I	CTCGAG	1 cut(s)	111
Sfr303I	CCGCGG	2 cut(s)	90, 616
SgrBI	CCGCGG	2 cut(s)	90, 616
SinI	GGWCC	2 cut(s)	107, 411
SlaI	CTCGAG	1 cut(s)	111
SmlI	CTYRAG	1 cut(s)	111
SmoI	CTYRAG	1 cut(s)	111
Sse9I	AATT	3 cut(s)	138, 460, 697
SseBI	AGGCCT	1 cut(s)	305
SsiI	CCGC	8 cut(s)	28, 87, 89, 490, 536, 595, 613, 615
SspMI	CTAG	2 cut(s)	336, 552
StuI	AGGCCT	1 cut(s)	305
StyD4I	CCNGG	3 cut(s)	324, 382, 407
StyI	CCWWGG	1 cut(s)	31
TaaI	ACNGT	3 cut(s)	527, 683, 748
TaiI	ACGT	1 cut(s)	47
TaqI	TCGA	2 cut(s)	112, 543
TasI	AATT	3 cut(s)	138, 460, 697
TatI	WGTACW	1 cut(s)	633
TauI	GCSGC	2 cut(s)	492, 598
TfiI	GAWTC	3 cut(s)	279, 719, 782
Tru1I	TTAA	1 cut(s)	72
Tru9I	TTAA	1 cut(s)	72
TscAI	CASTG	2 cut(s)	530, 830
TseFI	GTSAC	2 cut(s)	40, 416
Tsp45I	GTSAC	2 cut(s)	40, 416
TspDTI	ATGAA	2 cut(s)	17, 785
TspGWI	ACGGA	2 cut(s)	146, 413
TspRI	CASTG	2 cut(s)	530, 830
VpaK11BI	GGWCC	2 cut(s)	107, 411
XapI	RAATTY	1 cut(s)	697
XbaI	TCTAGA	1 cut(s)	551
XhoI	CTCGAG	1 cut(s)	111
XmiI	GTMKAC	1 cut(s)	743
XspI	CTAG	2 cut(s)	336, 552

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.