Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0001249

Physical Location & Seq

Genomic Coordinates Reverse (-)

7499591 .. 7500424

Gene Structure 834 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g08570.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 834 bp

ATGGCACTCCTCACCATCCTCTGGCTCCCCATCGGCTTCTTCCTTGCTTGCCTCCGAATCGCCCCCGGCTCCCTCCTCCCCATGCCAGTCGTCTACTACGCCTTCTGGGCCCTCTGTTTCCGTGTCACCGTTAAGGGCACCCCACTGCCTCCAGCCAAAAAATCCACCGGCCAGTCCGGCGTTCTCTTCATCTGCTCCCACCGCACCCTCCTCGACCCCATCTTTCTCTCCACCTCTCTCCGCCACCCCATCCCGGCCGTCACCTACTCCGTCTCTCGCCTCTCGGAGTTCATCTCCCCCATCAAGACCGTCCGCCTCAACCGCGACCGCGCCAAAGACGCTGCCATGATCAAGAAGCTACTAGAAGAAGGTGACCTTGCAATCTGCCCCGAGGGAACCAGCTGCCAGGAGCCGTTTCTGTTGAGGTTCTCCGCACTTTTTGCTGAGTTGACAGACGAGCTCGTTCCGGTGGCGATGGTGAACAAGATGAGCATGTTCCACGGGACGACGGCGCGTGGGTGGAAGGGGATGGACCCTTATTACTTCTTCATGAACCCGAGCCCAGAATACGAGGTCACATTTTTGAACAAGCTGCCGAAAGAGTTGACTTGCGGGGCGGGCAAATCGAGCCATGAGGTGGCAAACTATATACAGAGGGTTATAGCGGCGAGCCTTTCGTATGATATCACAAGTTTTACGAGGAAAGACGAGTATAGAGCTCTGGCAGGGAACGATGGCTCTGTGGTTGAGAAACCTATATATGCTGCAACCCAACAAAGTCATGGGGTGCTAATTTTGATTCGTTTCCTTCTGGTTTTTCTAGATCCTATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0006793 GO:0006796 GO:0007275 GO:0008150 GO:0008152 GO:0008374 GO:0009058 GO:0009059 GO:0009791 GO:0009908 GO:0009987 GO:0010143 GO:0016020 GO:0016311 GO:0016740 GO:0016746 GO:0016747 GO:0016787 GO:0016788 GO:0016791 GO:0022414 GO:0032501 GO:0032502 GO:0042578 GO:0043170 GO:0044237 GO:0048367 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090447 GO:0090567 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00561 ko00564 ko01100 ko01110 map00561 map00564 map01100 map01110

Pfam Domains

Protein Families

Acyltransferase HAD

Protein Analysis

278

Amino Acids

30.85

Weight (kDa)

8.84

Isoelectric Point (pI)

43.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Acyltransferase	PF01553	43 - 158	6.9e-07	Acyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001249)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g08570 FvH4_4g03930 FvH4_4g35510 FvH4_6g49610
malus_domestica	MD09G1043100.v1.1 MD12G1162100.v1.1 MD13G1082600.v1.1 MD16G1081700.v1.1 MD17G1044600.v1.1
prunus_persica	Prupe.1G264300_v2.0.a1 Prupe.3G274600_v2.0.a1
pyrus_communis	pycom111g03370 pycom16g07050
rosa_chinensis	RchiOBHm_Chr2g0169641 RchiOBHm_Chr4g0393951 RchiOBHm_Chr4g0445161 RchiOBHm_Chr6g0263921
rosa_laevigata	RLG00000005762 RLG00000009723 RLG00000014303 RLG00000021890
rosa_multiflora	Rmu_co8152054.1_g000001 Rmu_co8379785.1_g000001 Rmu_sc0000050.1_g000041 Rmu_sc0000363.1_g000001 Rmu_sc0002112.1_g000017 Rmu_sc0002720.1_g000011 Rmu_sc0013280.1_g000008
rosa_roxburghii	Rroxscaffold_176G00431300 Rroxscaffold_2G00081930 Rroxscaffold_7G00203770
rosa_rugosa	Rorug02G0541700 Rorug03G0369800.1 Rorug04G0359500 Rorug06G0006900
rosa_samantha	Rh2AG614100 Rh2BG626300 Rh2CG595600 Rh2DG637200 Rh4AG050000 Rh4AG420300 Rh4BG046400 Rh4BG432100 Rh4CG053400 Rh4CG446700 Rh4DG047000 Rh4DG428200 Rh6AG127000 Rh6BG123200 Rh6CG121700 Rh6DG109100
rosa_wichuraiana	Rw2G050890 Rw4G003950 Rw4G018340 Rw4G036040 Rw6G011030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	137
AccB7I	CCANNNNNTGG	2 cut(s)	21, 637
AccI	GTMKAC	1 cut(s)	93
AccII	CGCG	3 cut(s)	324, 330, 514
AciI	CCGC	9 cut(s)	202, 241, 313, 322, 328, 432, 612, 617, 665
AclWI	GGATC	1 cut(s)	818
AcoI	YGGCCR	2 cut(s)	169, 255
AfiI	CCNNNNNNNGG	3 cut(s)	21, 253, 637
AgsI	TTSAA	1 cut(s)	586
AjnI	CCWGG	1 cut(s)	405
AluBI	AGCT	5 cut(s)	358, 402, 460, 592, 719
AluI	AGCT	5 cut(s)	358, 402, 460, 592, 719
Alw21I	GWGCWC	2 cut(s)	462, 721
Alw26I	GTCTC	1 cut(s)	277
AlwI	GGATC	1 cut(s)	818
Ama87I	CYCGRG	2 cut(s)	389, 556
AoxI	GGCC	3 cut(s)	108, 169, 255
ApaI	GGGCCC	1 cut(s)	112
ApeKI	GCWGC	4 cut(s)	341, 402, 592, 764
AspLEI	GCGC	2 cut(s)	332, 514
AspS9I	GGNCC	3 cut(s)	108, 109, 532
AsuC2I	CCSGG	2 cut(s)	66, 254
AsuHPI	GGTGA	5 cut(s)	4, 118, 253, 383, 490
AvaI	CYCGRG	2 cut(s)	389, 556
AvaII	GGWCC	1 cut(s)	532
BaeGI	GKGCMC	2 cut(s)	112, 140
BanI	GGYRCC	1 cut(s)	137
BanII	GRGCYC	4 cut(s)	112, 462, 563, 721
Bbv12I	GWGCWC	2 cut(s)	462, 721
BbvI	GCAGC	4 cut(s)	328, 389, 579, 751
BccI	CCATC	8 cut(s)	23, 38, 227, 257, 308, 469, 523, 728
BceAI	ACGGC	3 cut(s)	242, 397, 525
BcgI	CGANNNNNNTGC	2 cut(s)	193, 227
BciT130I	CCWGG	1 cut(s)	407
BclI	TGATCA	1 cut(s)	348
BcnI	CCSGG	2 cut(s)	66, 254
BcoDI	GTCTC	1 cut(s)	277
BfaI	CTAG	2 cut(s)	362, 821
BglI	GCCNNNNNGGC	2 cut(s)	107, 177
BisI	GCNGC	5 cut(s)	342, 403, 593, 666, 765
BlsI	GCNGC	5 cut(s)	343, 404, 594, 667, 766
Bme1390I	CCNGG	3 cut(s)	66, 254, 407
Bme18I	GGWCC	1 cut(s)	532
BmeT110I	CYCGRG	2 cut(s)	389, 556
BmgT120I	GGNCC	3 cut(s)	108, 109, 532
BmiI	GGNNCC	7 cut(s)	26, 70, 110, 139, 397, 411, 534
BmrFI	CCNGG	3 cut(s)	66, 254, 407
BplI	GAGNNNNNCTC	2 cut(s)	278, 310
BpmI	CTGGAG	1 cut(s)	135
BpuMI	CCSGG	2 cut(s)	66, 254
BsaJI	CCNNGG	3 cut(s)	64, 390, 499
BsaWI	WCCGGW	1 cut(s)	466
Bsc4I	CCNNNNNNNGG	3 cut(s)	21, 253, 637
Bse118I	RCCGGY	1 cut(s)	167
Bse1I	ACTGG	2 cut(s)	86, 172
BseBI	CCWGG	1 cut(s)	407
BseDI	CCNNGG	3 cut(s)	64, 390, 499
BseGI	GGATG	3 cut(s)	15, 249, 534
BseLI	CCNNNNNNNGG	3 cut(s)	21, 253, 637
BseMII	CTCAG	1 cut(s)	435
BseNI	ACTGG	2 cut(s)	86, 172
BseRI	GAGGAG	2 cut(s)	65, 200
BseSI	GKGCMC	2 cut(s)	112, 140
BseX3I	CGGCCG	1 cut(s)	255
BseXI	GCAGC	4 cut(s)	328, 389, 579, 751
Bsh1236I	CGCG	3 cut(s)	324, 330, 514
Bsh1285I	CGRYCG	2 cut(s)	258, 328
BshFI	GGCC	3 cut(s)	110, 171, 257
BshNI	GGYRCC	1 cut(s)	137
BsiEI	CGRYCG	2 cut(s)	258, 328
BsiHKAI	GWGCWC	2 cut(s)	462, 721
BsiHKCI	CYCGRG	2 cut(s)	389, 556
BsiSI	CCGG	5 cut(s)	66, 168, 177, 254, 467
BslFI	GGGAC	1 cut(s)	517
BslI	CCNNNNNNNGG	3 cut(s)	21, 253, 637
BsmAI	GTCTC	1 cut(s)	277
BsmBI	CGTCTC	1 cut(s)	277
BsmFI	GGGAC	1 cut(s)	517
BsnI	GGCC	3 cut(s)	110, 171, 257
BsoBI	CYCGRG	2 cut(s)	389, 556
Bsp120I	GGGCCC	1 cut(s)	108
Bsp1286I	GDGCHC	5 cut(s)	112, 140, 462, 563, 721
Bsp143I	GATC	2 cut(s)	348, 823
BspACI	CCGC	9 cut(s)	202, 241, 313, 322, 328, 432, 612, 617, 665
BspANI	GGCC	3 cut(s)	110, 171, 257
BspCNI	CTCAG	1 cut(s)	436
BspFNI	CGCG	3 cut(s)	324, 330, 514
BspHI	TCATGA	1 cut(s)	549
BspLI	GGNNCC	7 cut(s)	26, 70, 110, 139, 397, 411, 534
BspPI	GGATC	1 cut(s)	818
BspT107I	GGYRCC	1 cut(s)	137
BsrFI	RCCGGY	1 cut(s)	167
BsrI	ACTGG	2 cut(s)	86, 172
BssAI	RCCGGY	1 cut(s)	167
BssECI	CCNNGG	3 cut(s)	64, 390, 499
BssMI	GATC	2 cut(s)	348, 823
Bst2UI	CCWGG	1 cut(s)	407
Bst4CI	ACNGT	2 cut(s)	130, 310
Bst6I	CTCTTC	1 cut(s)	191
BstAPI	GCANNNNNTGC	1 cut(s)	440
BstC8I	GCNNGC	3 cut(s)	49, 619, 670
BstDEI	CTNAG	1 cut(s)	444
BstDSI	CCRYGG	1 cut(s)	499
BstEII	GGTNACC	1 cut(s)	371
BstF5I	GGATG	3 cut(s)	15, 249, 534
BstFNI	CGCG	3 cut(s)	324, 330, 514
BstHHI	GCGC	2 cut(s)	332, 514
BstKTI	GATC	2 cut(s)	351, 826
BstMAI	GTCTC	1 cut(s)	277
BstMBI	GATC	2 cut(s)	348, 823
BstMCI	CGRYCG	2 cut(s)	258, 328
BstMWI	GCNNNNNNNGC	8 cut(s)	107, 177, 201, 321, 338, 440, 618, 627
BstNI	CCWGG	1 cut(s)	407
BstNSI	RCATGY	1 cut(s)	496
BstPI	GGTNACC	1 cut(s)	371
BstSCI	CCNGG	3 cut(s)	64, 252, 405
BstSLI	GKGCMC	2 cut(s)	112, 140
BstUI	CGCG	3 cut(s)	324, 330, 514
BstV1I	GCAGC	4 cut(s)	328, 389, 579, 751
BstX2I	RGATCY	1 cut(s)	823
BstYI	RGATCY	1 cut(s)	823
BstZI	CGGCCG	1 cut(s)	255
BsuRI	GGCC	3 cut(s)	110, 171, 257
BtgI	CCRYGG	1 cut(s)	499
BtgZI	GCGATG	1 cut(s)	488
BtsCI	GGATG	3 cut(s)	15, 249, 534
BtsI	GCAGTG	1 cut(s)	143
BtsIMutI	CAGTG	1 cut(s)	143
Cac8I	GCNNGC	3 cut(s)	49, 619, 670
CciI	TCATGA	1 cut(s)	549
CfoI	GCGC	2 cut(s)	332, 514
Cfr10I	RCCGGY	1 cut(s)	167
Cfr13I	GGNCC	3 cut(s)	108, 109, 532
CseI	GACGC	1 cut(s)	347
CviAII	CATG	6 cut(s)	82, 346, 493, 550, 632, 782
DdeI	CTNAG	1 cut(s)	444
DpnI	GATC	2 cut(s)	350, 825
DpnII	GATC	2 cut(s)	348, 823
EaeI	YGGCCR	2 cut(s)	169, 255
EagI	CGGCCG	1 cut(s)	255
Eam1104I	CTCTTC	1 cut(s)	191
EarI	CTCTTC	1 cut(s)	191
EciI	GGCGGA	2 cut(s)	230, 302
Ecl136II	GAGCTC	2 cut(s)	460, 719
EclXI	CGGCCG	1 cut(s)	255
Eco24I	GRGCYC	4 cut(s)	112, 462, 563, 721
Eco32I	GATATC	1 cut(s)	685
Eco47I	GGWCC	1 cut(s)	532
Eco52I	CGGCCG	1 cut(s)	255
Eco53kI	GAGCTC	2 cut(s)	460, 719
Eco88I	CYCGRG	2 cut(s)	389, 556
Eco91I	GGTNACC	1 cut(s)	371
EcoICRI	GAGCTC	2 cut(s)	460, 719
EcoO109I	RGGNCCY	1 cut(s)	109
EcoO65I	GGTNACC	1 cut(s)	371
EcoRII	CCWGG	1 cut(s)	405
EcoRV	GATATC	1 cut(s)	685
EcoT38I	GRGCYC	4 cut(s)	112, 462, 563, 721
Esp3I	CGTCTC	1 cut(s)	277
FaeI	CATG	6 cut(s)	85, 349, 496, 553, 635, 785
FalI	AAGNNNNNCTT	2 cut(s)	360, 392
FaqI	GGGAC	1 cut(s)	517
FatI	CATG	6 cut(s)	81, 345, 492, 549, 631, 781
FauI	CCCGC	2 cut(s)	605, 610
FbaI	TGATCA	1 cut(s)	348
FblI	GTMKAC	1 cut(s)	93
Fnu4HI	GCNGC	5 cut(s)	342, 403, 593, 666, 765
FokI	GGATG	3 cut(s)	2, 236, 541
FriOI	GRGCYC	4 cut(s)	112, 462, 563, 721
Fsp4HI	GCNGC	5 cut(s)	342, 403, 593, 666, 765
FspBI	CTAG	2 cut(s)	362, 821
GlaI	GCGC	2 cut(s)	331, 513
GluI	GCNGC	5 cut(s)	342, 403, 593, 666, 765
GsuI	CTGGAG	1 cut(s)	135
HaeIII	GGCC	3 cut(s)	110, 171, 257
HapII	CCGG	5 cut(s)	66, 168, 177, 254, 467
HgaI	GACGC	1 cut(s)	347
HhaI	GCGC	2 cut(s)	332, 514
Hin1II	CATG	6 cut(s)	85, 349, 496, 553, 635, 785
Hin6I	GCGC	2 cut(s)	330, 512
HinP1I	GCGC	2 cut(s)	330, 512
HincII	GTYRAC	2 cut(s)	450, 606
HindII	GTYRAC	2 cut(s)	450, 606
HinfI	GANTC	2 cut(s)	57, 799
HpaII	CCGG	5 cut(s)	66, 168, 177, 254, 467
HphI	GGTGA	5 cut(s)	4, 118, 253, 383, 490
Hpy166II	GTNNAC	4 cut(s)	94, 450, 481, 606
Hpy188I	TCNGA	2 cut(s)	56, 286
Hpy188III	TCNNGA	4 cut(s)	304, 352, 550, 821
Hpy8I	GTNNAC	4 cut(s)	94, 450, 481, 606
Hpy99I	CGWCG	1 cut(s)	511
HpyAV	CCTTC	4 cut(s)	112, 362, 517, 818
HpyCH4III	ACNGT	2 cut(s)	130, 310
HpyCH4V	TGCA	2 cut(s)	380, 767
HpyF10VI	GCNNNNNNNGC	8 cut(s)	107, 177, 201, 321, 338, 440, 618, 627
HpyF3I	CTNAG	1 cut(s)	444
Hsp92II	CATG	6 cut(s)	85, 349, 496, 553, 635, 785
HspAI	GCGC	2 cut(s)	330, 512
Ksp22I	TGATCA	1 cut(s)	348
Kzo9I	GATC	2 cut(s)	348, 823
LmnI	GCTCC	4 cut(s)	30, 74, 200, 409
Lsp1109I	GCAGC	4 cut(s)	328, 389, 579, 751
MaeI	CTAG	2 cut(s)	362, 821
MaeIII	GTNAC	4 cut(s)	124, 259, 371, 574
MalI	GATC	2 cut(s)	350, 825
MboI	GATC	2 cut(s)	348, 823
MboII	GAAGA	4 cut(s)	31, 178, 377, 538
MflI	RGATCY	1 cut(s)	823
MhlI	GDGCHC	5 cut(s)	112, 140, 462, 563, 721
MluCI	AATT	1 cut(s)	792
MseI	TTAA	1 cut(s)	132
MspA1I	CMGCKG	1 cut(s)	402
MspI	CCGG	5 cut(s)	66, 168, 177, 254, 467
MspR9I	CCNGG	3 cut(s)	66, 254, 407
MvaI	CCWGG	1 cut(s)	407
MvnI	CGCG	3 cut(s)	324, 330, 514
MwoI	GCNNNNNNNGC	8 cut(s)	107, 177, 201, 321, 338, 440, 618, 627
NciI	CCSGG	2 cut(s)	66, 254
NdeII	GATC	2 cut(s)	348, 823
NlaIII	CATG	6 cut(s)	85, 349, 496, 553, 635, 785
NlaIV	GGNNCC	7 cut(s)	26, 70, 110, 139, 397, 411, 534
NmuCI	GTSAC	4 cut(s)	124, 259, 371, 574
NspI	RCATGY	1 cut(s)	496
PagI	TCATGA	1 cut(s)	549
PfeI	GAWTC	2 cut(s)	57, 799
PflMI	CCANNNNNTGG	2 cut(s)	21, 637
PkrI	GCNGC	5 cut(s)	343, 404, 594, 667, 766
Psp124BI	GAGCTC	2 cut(s)	462, 721
Psp6I	CCWGG	1 cut(s)	405
PspEI	GGTNACC	1 cut(s)	371
PspGI	CCWGG	1 cut(s)	405
PspN4I	GGNNCC	7 cut(s)	26, 70, 110, 139, 397, 411, 534
PspOMI	GGGCCC	1 cut(s)	108
PspPI	GGNCC	3 cut(s)	108, 109, 532
PsuI	RGATCY	1 cut(s)	823
PvuII	CAGCTG	1 cut(s)	402
SacI	GAGCTC	2 cut(s)	462, 721
SaqAI	TTAA	1 cut(s)	132
SatI	GCNGC	5 cut(s)	342, 403, 593, 666, 765
Sau3AI	GATC	2 cut(s)	348, 823
Sau96I	GGNCC	3 cut(s)	108, 109, 532
ScrFI	CCNGG	3 cut(s)	66, 254, 407
SduI	GDGCHC	5 cut(s)	112, 140, 462, 563, 721
SinI	GGWCC	1 cut(s)	532
Sse9I	AATT	1 cut(s)	792
SsiI	CCGC	9 cut(s)	202, 241, 313, 322, 328, 432, 612, 617, 665
SspMI	CTAG	2 cut(s)	362, 821
SstI	GAGCTC	2 cut(s)	462, 721
StyD4I	CCNGG	3 cut(s)	64, 252, 405
TaaI	ACNGT	2 cut(s)	130, 310
TaqI	TCGA	2 cut(s)	213, 626
TasI	AATT	1 cut(s)	792
TauI	GCSGC	1 cut(s)	668
TfiI	GAWTC	2 cut(s)	57, 799
Tru1I	TTAA	1 cut(s)	132
Tru9I	TTAA	1 cut(s)	132
TscAI	CASTG	1 cut(s)	150
TseFI	GTSAC	4 cut(s)	124, 259, 371, 574
TseI	GCWGC	4 cut(s)	341, 402, 592, 764
Tsp45I	GTSAC	4 cut(s)	124, 259, 371, 574
TspDTI	ATGAA	4 cut(s)	178, 280, 538, 566
TspGWI	ACGGA	2 cut(s)	110, 259
TspRI	CASTG	1 cut(s)	150
Van91I	CCANNNNNTGG	2 cut(s)	21, 637
VpaK11BI	GGWCC	1 cut(s)	532
XbaI	TCTAGA	1 cut(s)	820
XceI	RCATGY	1 cut(s)	496
XcmI	CCANNNNNNNNNTGG	1 cut(s)	779
XmiI	GTMKAC	1 cut(s)	93
XspI	CTAG	2 cut(s)	362, 821

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.