Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0001249

Physical Location & Seq

Genomic Coordinates Forward (+)

67138206 .. 67139217

Gene Structure 1012 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0541700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 285 bp

ATGAGTTCTTCATCATCAGTAGCAAACAGGGCTTGGGTAGTTGCAGCAAGTGTGGGAGTTGTGGAGGCCTTGAAAAGAGACCAAGGGATCTGCAGGTGGAGTCAAACAATGAGATTGGCGCAACAACATGCCAAGACTCACCTCAGATCTTTTTCTCAGGCGAACCAGAGACTCTCTTCCTCATACTCTGCTTTGTTTTCAAGAAAACTGAGAGATGACAAGCCGAAGCAGTCTGAGGAATCTATGAGGAATGTCATGTACCTCAACTCTTGGGGTCCCAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0006793 GO:0006796 GO:0007275 GO:0008150 GO:0008152 GO:0008374 GO:0009058 GO:0009059 GO:0009791 GO:0009908 GO:0009987 GO:0010143 GO:0016020 GO:0016311 GO:0016740 GO:0016746 GO:0016747 GO:0016787 GO:0016788 GO:0016791 GO:0022414 GO:0032501 GO:0032502 GO:0042578 GO:0043170 GO:0044237 GO:0048367 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090447 GO:0090567 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00561 ko00564 ko01100 ko01110 map00561 map00564 map01100 map01110

Pfam Domains

Protein Families

Acyltransferase HAD

Protein Analysis

94

Amino Acids

10.63

Weight (kDa)

10.63

Isoelectric Point (pI)

62.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF3774	PF12609	14 - 93	5.9e-27	Wound-induced protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0001249)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g08570 FvH4_4g03930 FvH4_4g35510 FvH4_6g49610
malus_domestica	MD09G1043100.v1.1 MD12G1162100.v1.1 MD13G1082600.v1.1 MD16G1081700.v1.1 MD17G1044600.v1.1
prunus_persica	Prupe.1G264300_v2.0.a1 Prupe.3G274600_v2.0.a1
pyrus_communis	pycom111g03370 pycom16g07050
rosa_chinensis	RchiOBHm_Chr2g0169641 RchiOBHm_Chr4g0393951 RchiOBHm_Chr4g0445161 RchiOBHm_Chr6g0263921
rosa_laevigata	RLG00000005762 RLG00000009723 RLG00000014303 RLG00000021890
rosa_multiflora	Rmu_co8152054.1_g000001 Rmu_co8379785.1_g000001 Rmu_sc0000050.1_g000041 Rmu_sc0000363.1_g000001 Rmu_sc0002112.1_g000017 Rmu_sc0002720.1_g000011 Rmu_sc0013280.1_g000008
rosa_roxburghii	Rroxscaffold_176G00431300 Rroxscaffold_2G00081930 Rroxscaffold_7G00203770
rosa_rugosa	Rorug02G0541700 Rorug03G0369800.1 Rorug04G0359500 Rorug06G0006900
rosa_samantha	Rh2AG614100 Rh2BG626300 Rh2CG595600 Rh2DG637200 Rh4AG050000 Rh4AG420300 Rh4BG046400 Rh4BG432100 Rh4CG053400 Rh4CG446700 Rh4DG047000 Rh4DG428200 Rh6AG127000 Rh6BG123200 Rh6CG121700 Rh6DG109100
rosa_wichuraiana	Rw2G050890 Rw4G003950 Rw4G018340 Rw4G036040 Rw6G011030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	84
Acc36I	ACCTGC	1 cut(s)	84
AclWI	GGATC	1 cut(s)	95
AfaI	GTAC	1 cut(s)	260
AgsI	TTSAA	2 cut(s)	73, 201
Alw26I	GTCTC	2 cut(s)	72, 163
AlwI	GGATC	1 cut(s)	95
AoxI	GGCC	1 cut(s)	66
ApeKI	GCWGC	1 cut(s)	44
AspLEI	GCGC	1 cut(s)	121
AspS9I	GGNCC	1 cut(s)	275
AsuHPI	GGTGA	1 cut(s)	131
AvaII	GGWCC	1 cut(s)	275
BbvI	GCAGC	1 cut(s)	56
BcoDI	GTCTC	2 cut(s)	72, 163
BfmI	CTRYAG	1 cut(s)	91
BfuAI	ACCTGC	1 cut(s)	84
BglII	AGATCT	1 cut(s)	146
BisI	GCNGC	1 cut(s)	45
BlsI	GCNGC	1 cut(s)	46
Bme18I	GGWCC	1 cut(s)	275
BmgT120I	GGNCC	1 cut(s)	275
BmiI	GGNNCC	2 cut(s)	276, 277
BsaI	GGTCTC	1 cut(s)	72
BsaJI	CCNNGG	1 cut(s)	82
BseDI	CCNNGG	1 cut(s)	82
BseMII	CTCAG	4 cut(s)	157, 170, 200, 225
BseXI	GCAGC	1 cut(s)	56
BshFI	GGCC	1 cut(s)	68
BslFI	GGGAC	1 cut(s)	261
BsmAI	GTCTC	2 cut(s)	72, 163
BsmFI	GGGAC	1 cut(s)	261
BsnI	GGCC	1 cut(s)	68
Bso31I	GGTCTC	1 cut(s)	72
Bsp143I	GATC	2 cut(s)	87, 146
BspANI	GGCC	1 cut(s)	68
BspCNI	CTCAG	4 cut(s)	156, 169, 201, 226
BspLI	GGNNCC	2 cut(s)	276, 277
BspMAI	CTGCAG	1 cut(s)	95
BspMI	ACCTGC	1 cut(s)	84
BspPI	GGATC	1 cut(s)	95
BspTNI	GGTCTC	1 cut(s)	72
BssECI	CCNNGG	1 cut(s)	82
BssMI	GATC	2 cut(s)	87, 146
BssT1I	CCWWGG	1 cut(s)	82
Bst6I	CTCTTC	1 cut(s)	181
BstDEI	CTNAG	4 cut(s)	143, 156, 209, 234
BstHHI	GCGC	1 cut(s)	121
BstKTI	GATC	2 cut(s)	90, 149
BstMAI	GTCTC	2 cut(s)	72, 163
BstMBI	GATC	2 cut(s)	87, 146
BstMWI	GCNNNNNNNGC	1 cut(s)	29
BstNSI	RCATGY	1 cut(s)	131
BstSFI	CTRYAG	1 cut(s)	91
BstV1I	GCAGC	1 cut(s)	56
BstX2I	RGATCY	2 cut(s)	87, 146
BstYI	RGATCY	2 cut(s)	87, 146
BsuRI	GGCC	1 cut(s)	68
BveI	ACCTGC	1 cut(s)	84
CfoI	GCGC	1 cut(s)	121
Cfr13I	GGNCC	1 cut(s)	275
Csp6I	GTAC	1 cut(s)	259
CviAII	CATG	2 cut(s)	128, 256
CviJI	RGCY	3 cut(s)	32, 68, 223
CviKI_1	RGCY	3 cut(s)	32, 68, 223
CviQI	GTAC	1 cut(s)	259
DdeI	CTNAG	4 cut(s)	143, 156, 209, 234
DpnI	GATC	2 cut(s)	89, 148
DpnII	GATC	2 cut(s)	87, 146
Eam1104I	CTCTTC	1 cut(s)	181
EarI	CTCTTC	1 cut(s)	181
Eco130I	CCWWGG	1 cut(s)	82
Eco147I	AGGCCT	1 cut(s)	68
Eco31I	GGTCTC	1 cut(s)	72
Eco47I	GGWCC	1 cut(s)	275
EcoO109I	RGGNCCY	1 cut(s)	275
EcoT14I	CCWWGG	1 cut(s)	82
ErhI	CCWWGG	1 cut(s)	82
FaeI	CATG	2 cut(s)	131, 259
FaiI	YATR	4 cut(s)	129, 184, 245, 257
FaqI	GGGAC	1 cut(s)	261
FatI	CATG	2 cut(s)	127, 255
Fnu4HI	GCNGC	1 cut(s)	45
Fsp4HI	GCNGC	1 cut(s)	45
GlaI	GCGC	1 cut(s)	120
GluI	GCNGC	1 cut(s)	45
HaeIII	GGCC	1 cut(s)	68
HhaI	GCGC	1 cut(s)	121
Hin1II	CATG	2 cut(s)	131, 259
Hin6I	GCGC	1 cut(s)	119
HinP1I	GCGC	1 cut(s)	119
HinfI	GANTC	4 cut(s)	100, 136, 171, 239
HphI	GGTGA	1 cut(s)	131
Hpy188I	TCNGA	2 cut(s)	146, 235
Hpy188III	TCNNGA	1 cut(s)	201
HpyCH4V	TGCA	2 cut(s)	44, 93
HpyF10VI	GCNNNNNNNGC	1 cut(s)	29
HpyF3I	CTNAG	4 cut(s)	143, 156, 209, 234
Hsp92II	CATG	2 cut(s)	131, 259
HspAI	GCGC	1 cut(s)	119
KflI	GGGWCCC	1 cut(s)	275
Kzo9I	GATC	2 cut(s)	87, 146
LpnPI	CCDG	4 cut(s)	13, 79, 143, 179
Lsp1109I	GCAGC	1 cut(s)	56
MalI	GATC	2 cut(s)	89, 148
MboI	GATC	2 cut(s)	87, 146
MboII	GAAGA	1 cut(s)	168
MflI	RGATCY	2 cut(s)	87, 146
MlyI	GAGTC	3 cut(s)	109, 130, 165
MnlI	CCTC	6 cut(s)	58, 152, 190, 229, 240, 272
MwoI	GCNNNNNNNGC	1 cut(s)	29
NdeII	GATC	2 cut(s)	87, 146
NlaIII	CATG	2 cut(s)	131, 259
NlaIV	GGNNCC	2 cut(s)	276, 277
NspI	RCATGY	1 cut(s)	131
PaqCI	CACCTGC	1 cut(s)	84
PceI	AGGCCT	1 cut(s)	68
PfeI	GAWTC	1 cut(s)	239
PkrI	GCNGC	1 cut(s)	46
PleI	GAGTC	3 cut(s)	108, 130, 165
PpsI	GAGTC	3 cut(s)	108, 130, 165
PpuMI	RGGWCCY	1 cut(s)	275
Psp5II	RGGWCCY	1 cut(s)	275
PspN4I	GGNNCC	2 cut(s)	276, 277
PspPI	GGNCC	1 cut(s)	275
PspPPI	RGGWCCY	1 cut(s)	275
PstI	CTGCAG	1 cut(s)	95
PsuI	RGATCY	2 cut(s)	87, 146
RsaI	GTAC	1 cut(s)	260
RsaNI	GTAC	1 cut(s)	259
SatI	GCNGC	1 cut(s)	45
Sau3AI	GATC	2 cut(s)	87, 146
Sau96I	GGNCC	1 cut(s)	275
SchI	GAGTC	3 cut(s)	109, 130, 165
SetI	ASST	3 cut(s)	98, 144, 264
SfcI	CTRYAG	1 cut(s)	91
SinI	GGWCC	1 cut(s)	275
SseBI	AGGCCT	1 cut(s)	68
StuI	AGGCCT	1 cut(s)	68
StyI	CCWWGG	1 cut(s)	82
TfiI	GAWTC	1 cut(s)	239
TseI	GCWGC	1 cut(s)	44
VpaK11BI	GGWCC	1 cut(s)	275
XceI	RCATGY	1 cut(s)	131

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.