Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002720.1

Orthogroup ID

OG0001249

Physical Location & Seq

Genomic Coordinates Forward (+)

26412 .. 27302

Gene Structure 891 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002720.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

atgcaggagggttatatagtgccagccaaacccacactagaagctgtgagaagggaggagctcccaaagcccatcatcttccatgacggtcgcctagtccacaagccaacacctctcttagcgttcctcatcattctttggttccccataggtttctttatcgcttgcttgcgaattgctattttgtcgctccttcctcagagcctcgcctactacgccctttgggcacttggtattcgtgtcattgtgaatggcaccccacctacattggctaaacacactattggtcgtaaaaactctggtcagatctttatctcgaaccatagaactgttcttgatgcatttttcatctatcttgccctaggctacccaataaccggtcccacgtactcaaccactcgactcttggagttcctttcaccattcaaggttgtccgaataagtcgtaaccgagaacaggatgcggtcactatcaagaagcttctacaagaaggtaataacatatatctttgcccggagggaaccacttgtagggaaccatatgttttaaggttttcggcattgtttgctgaattaagtgaccaacttgtccctgtggccatcgtctgccaccagagcatgtttcatggaaccacagttagagggtggaaagcaatggacccgtttttcttctcaatgaacccgtttccatcatatgaagtcacattcttgaataagttggctccagaacaaacatgcaatgctacttctggaaagactagttttgaggtagcaaattacgtacaaaggattatagctgcaactctttcttacgagtgcactaggcttacaaggaaggacaagtattgggttcttgcggggaatgatgggaatgtggttagaacaacttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0006793 GO:0006796 GO:0007275 GO:0008150 GO:0008152 GO:0008374 GO:0009058 GO:0009059 GO:0009791 GO:0009908 GO:0009987 GO:0010143 GO:0016020 GO:0016311 GO:0016740 GO:0016746 GO:0016747 GO:0016787 GO:0016788 GO:0016791 GO:0022414 GO:0032501 GO:0032502 GO:0042578 GO:0043170 GO:0044237 GO:0048367 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090447 GO:0090567 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00561 ko00564 ko01100 ko01110 map00561 map00564 map01100 map01110

Pfam Domains

Protein Families

Acyltransferase HAD

Protein Analysis

296

Amino Acids

33.45

Weight (kDa)

9.37

Isoelectric Point (pI)

39.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001249)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g08570 FvH4_4g03930 FvH4_4g35510 FvH4_6g49610
malus_domestica	MD09G1043100.v1.1 MD12G1162100.v1.1 MD13G1082600.v1.1 MD16G1081700.v1.1 MD17G1044600.v1.1
prunus_persica	Prupe.1G264300_v2.0.a1 Prupe.3G274600_v2.0.a1
pyrus_communis	pycom111g03370 pycom16g07050
rosa_chinensis	RchiOBHm_Chr2g0169641 RchiOBHm_Chr4g0393951 RchiOBHm_Chr4g0445161 RchiOBHm_Chr6g0263921
rosa_laevigata	RLG00000005762 RLG00000009723 RLG00000014303 RLG00000021890
rosa_multiflora	Rmu_co8152054.1_g000001 Rmu_co8379785.1_g000001 Rmu_sc0000050.1_g000041 Rmu_sc0000363.1_g000001 Rmu_sc0002112.1_g000017 Rmu_sc0002720.1_g000011 Rmu_sc0013280.1_g000008
rosa_roxburghii	Rroxscaffold_176G00431300 Rroxscaffold_2G00081930 Rroxscaffold_7G00203770
rosa_rugosa	Rorug02G0541700 Rorug03G0369800.1 Rorug04G0359500 Rorug06G0006900
rosa_samantha	Rh2AG614100 Rh2BG626300 Rh2CG595600 Rh2DG637200 Rh4AG050000 Rh4AG420300 Rh4BG046400 Rh4BG432100 Rh4CG053400 Rh4CG446700 Rh4DG047000 Rh4DG428200 Rh6AG127000 Rh6BG123200 Rh6CG121700 Rh6DG109100
rosa_wichuraiana	Rw2G050890 Rw4G003950 Rw4G018340 Rw4G036040 Rw6G011030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	587
AccB1I	GGYRCC	1 cut(s)	254
AciI	CCGC	2 cut(s)	464, 857
AcoI	YGGCCR	1 cut(s)	597
AfaI	GTAC	2 cut(s)	389, 783
AfiI	CCNNNNNNNGG	3 cut(s)	377, 457, 531
AgeI	ACCGGT	1 cut(s)	377
AgsI	TTSAA	2 cut(s)	427, 712
AhlI	ACTAGT	1 cut(s)	758
AluBI	AGCT	4 cut(s)	44, 61, 481, 797
AluI	AGCT	4 cut(s)	44, 61, 481, 797
Alw21I	GWGCWC	2 cut(s)	63, 821
Alw44I	GTGCAC	1 cut(s)	817
AoxI	GGCC	1 cut(s)	597
ApaLI	GTGCAC	1 cut(s)	817
ApeKI	GCWGC	1 cut(s)	797
AsiGI	ACCGGT	1 cut(s)	377
AspA2I	CCTAGG	1 cut(s)	361
AspS9I	GGNCC	2 cut(s)	380, 658
AsuC2I	CCSGG	1 cut(s)	515
AsuHPI	GGTGA	1 cut(s)	411
AvaII	GGWCC	2 cut(s)	380, 658
AvrII	CCTAGG	1 cut(s)	361
BaeGI	GKGCMC	2 cut(s)	229, 821
BalI	TGGCCA	1 cut(s)	599
BanI	GGYRCC	1 cut(s)	254
BanII	GRGCYC	1 cut(s)	63
Bbv12I	GWGCWC	2 cut(s)	63, 821
BbvI	GCAGC	1 cut(s)	784
BccI	CCATC	4 cut(s)	80, 608, 697, 860
BcnI	CCSGG	1 cut(s)	515
BcuI	ACTAGT	1 cut(s)	758
BfaI	CTAG	5 cut(s)	38, 95, 362, 759, 822
BglI	GCCNNNNNGGC	1 cut(s)	224
BglII	AGATCT	1 cut(s)	306
BisI	GCNGC	1 cut(s)	798
BlnI	CCTAGG	1 cut(s)	361
BlsI	GCNGC	1 cut(s)	799
Bme1390I	CCNGG	1 cut(s)	515
Bme18I	GGWCC	2 cut(s)	380, 658
BmgT120I	GGNCC	2 cut(s)	380, 658
BmiI	GGNNCC	8 cut(s)	143, 256, 382, 523, 537, 631, 660, 723
BmrFI	CCNGG	1 cut(s)	515
BmsI	GCATC	2 cut(s)	328, 451
BpmI	CTGGAG	1 cut(s)	708
BpuMI	CCSGG	1 cut(s)	515
BsaAI	YACGTR	2 cut(s)	387, 781
BsaBI	GATNNNNATC	1 cut(s)	311
BsaJI	CCNNGG	1 cut(s)	361
BsaWI	WCCGGW	1 cut(s)	377
Bsc4I	CCNNNNNNNGG	3 cut(s)	377, 457, 531
Bse118I	RCCGGY	1 cut(s)	377
Bse3DI	GCAATG	2 cut(s)	660, 745
Bse8I	GATNNNNATC	1 cut(s)	311
BseDI	CCNNGG	1 cut(s)	361
BseGI	GGATG	1 cut(s)	466
BseJI	GATNNNNATC	1 cut(s)	311
BseLI	CCNNNNNNNGG	3 cut(s)	377, 457, 531
BseMI	GCAATG	2 cut(s)	660, 745
BseMII	CTCAG	1 cut(s)	212
BseRI	GAGGAG	1 cut(s)	71
BseSI	GKGCMC	2 cut(s)	229, 821
BseXI	GCAGC	1 cut(s)	784
Bsh1285I	CGRYCG	1 cut(s)	91
BshFI	GGCC	1 cut(s)	599
BshNI	GGYRCC	1 cut(s)	254
BshTI	ACCGGT	1 cut(s)	377
BsiEI	CGRYCG	1 cut(s)	91
BsiHKAI	GWGCWC	2 cut(s)	63, 821
BsiSI	CCGG	2 cut(s)	378, 515
BslFI	GGGAC	2 cut(s)	366, 575
BslI	CCNNNNNNNGG	3 cut(s)	377, 457, 531
BsmFI	GGGAC	2 cut(s)	366, 575
BsnI	GGCC	1 cut(s)	599
Bsp1286I	GDGCHC	3 cut(s)	63, 229, 821
Bsp143I	GATC	1 cut(s)	306
BspACI	CCGC	2 cut(s)	464, 857
BspANI	GGCC	1 cut(s)	599
BspCNI	CTCAG	1 cut(s)	211
BspLI	GGNNCC	8 cut(s)	143, 256, 382, 523, 537, 631, 660, 723
BspT107I	GGYRCC	1 cut(s)	254
BsrDI	GCAATG	2 cut(s)	660, 745
BsrFI	RCCGGY	1 cut(s)	377
BssAI	RCCGGY	1 cut(s)	377
BssECI	CCNNGG	1 cut(s)	361
BssMI	GATC	1 cut(s)	306
BssT1I	CCWWGG	1 cut(s)	361
Bst4CI	ACNGT	3 cut(s)	89, 331, 637
BstAPI	GCANNNNNTGC	1 cut(s)	566
BstBAI	YACGTR	2 cut(s)	387, 781
BstC8I	GCNNGC	3 cut(s)	24, 166, 170
BstDEI	CTNAG	2 cut(s)	118, 198
BstF5I	GGATG	1 cut(s)	466
BstKTI	GATC	1 cut(s)	309
BstMBI	GATC	1 cut(s)	306
BstMCI	CGRYCG	1 cut(s)	91
BstMWI	GCNNNNNNNGC	5 cut(s)	67, 215, 224, 566, 615
BstNSI	RCATGY	2 cut(s)	622, 738
BstSCI	CCNGG	1 cut(s)	513
BstSLI	GKGCMC	2 cut(s)	229, 821
BstSNI	TACGTA	1 cut(s)	781
BstV1I	GCAGC	1 cut(s)	784
BstX2I	RGATCY	1 cut(s)	306
BstYI	RGATCY	1 cut(s)	306
BsuRI	GGCC	1 cut(s)	599
BtsCI	GGATG	1 cut(s)	466
Cac8I	GCNNGC	3 cut(s)	24, 166, 170
Cfr10I	RCCGGY	1 cut(s)	377
Cfr13I	GGNCC	2 cut(s)	380, 658
Csp6I	GTAC	2 cut(s)	388, 782
CspAI	ACCGGT	1 cut(s)	377
CspCI	CAANNNNNGTGG	2 cut(s)	249, 284
CviAII	CATG	4 cut(s)	83, 619, 626, 735
CviQI	GTAC	2 cut(s)	388, 782
DdeI	CTNAG	2 cut(s)	118, 198
DpnI	GATC	1 cut(s)	308
DpnII	GATC	1 cut(s)	306
DrdI	GACNNNNNNGTC	1 cut(s)	587
DseDI	GACNNNNNNGTC	1 cut(s)	587
EaeI	YGGCCR	1 cut(s)	597
Ecl136II	GAGCTC	1 cut(s)	61
Eco105I	TACGTA	1 cut(s)	781
Eco130I	CCWWGG	1 cut(s)	361
Eco24I	GRGCYC	1 cut(s)	63
Eco47I	GGWCC	2 cut(s)	380, 658
Eco53kI	GAGCTC	1 cut(s)	61
EcoICRI	GAGCTC	1 cut(s)	61
EcoT14I	CCWWGG	1 cut(s)	361
EcoT22I	ATGCAT	1 cut(s)	343
EcoT38I	GRGCYC	1 cut(s)	63
ErhI	CCWWGG	1 cut(s)	361
FaeI	CATG	4 cut(s)	86, 622, 629, 738
FaqI	GGGAC	2 cut(s)	366, 575
FatI	CATG	4 cut(s)	82, 618, 625, 734
FauI	CCCGC	1 cut(s)	850
FauNDI	CATATG	2 cut(s)	541, 694
Fnu4HI	GCNGC	1 cut(s)	798
FokI	GGATG	1 cut(s)	473
FriOI	GRGCYC	1 cut(s)	63
Fsp4HI	GCNGC	1 cut(s)	798
FspBI	CTAG	5 cut(s)	38, 95, 362, 759, 822
GluI	GCNGC	1 cut(s)	798
GsuI	CTGGAG	1 cut(s)	708
HaeIII	GGCC	1 cut(s)	599
HapII	CCGG	2 cut(s)	378, 515
Hin1II	CATG	4 cut(s)	86, 622, 629, 738
HindIII	AAGCTT	1 cut(s)	479
HinfI	GANTC	1 cut(s)	402
HpaII	CCGG	2 cut(s)	378, 515
HphI	GGTGA	1 cut(s)	411
Hpy166II	GTNNAC	2 cut(s)	100, 819
Hpy188I	TCNGA	3 cut(s)	201, 306, 437
Hpy188III	TCNNGA	6 cut(s)	316, 335, 475, 709, 725, 750
Hpy8I	GTNNAC	2 cut(s)	100, 819
HpyAV	CCTTC	4 cut(s)	45, 203, 485, 829
HpyCH4III	ACNGT	3 cut(s)	89, 331, 637
HpyCH4IV	ACGT	2 cut(s)	386, 780
HpyCH4V	TGCA	5 cut(s)	4, 341, 738, 800, 819
HpyF10VI	GCNNNNNNNGC	5 cut(s)	67, 215, 224, 566, 615
HpyF3I	CTNAG	2 cut(s)	118, 198
HpySE526I	ACGT	2 cut(s)	386, 780
Hsp92II	CATG	4 cut(s)	86, 622, 629, 738
Kzo9I	GATC	1 cut(s)	306
LmnI	GCTCC	4 cut(s)	58, 66, 195, 727
LpnPI	CCDG	9 cut(s)	36, 285, 391, 443, 528, 606, 626, 735, 738
Lsp1109I	GCAGC	1 cut(s)	784
LweI	GCATC	2 cut(s)	328, 451
MaeI	CTAG	5 cut(s)	38, 95, 362, 759, 822
MaeII	ACGT	2 cut(s)	386, 780
MaeIII	GTNAC	4 cut(s)	446, 466, 578, 700
MalI	GATC	1 cut(s)	308
MboI	GATC	1 cut(s)	306
MboII	GAAGA	2 cut(s)	70, 661
MflI	RGATCY	1 cut(s)	306
MhlI	GDGCHC	3 cut(s)	63, 229, 821
MlsI	TGGCCA	1 cut(s)	599
MluCI	AATT	3 cut(s)	174, 572, 775
MluNI	TGGCCA	1 cut(s)	599
MlyI	GAGTC	1 cut(s)	396
MnlI	CCTC	8 cut(s)	49, 123, 137, 207, 215, 511, 635, 760
Mox20I	TGGCCA	1 cut(s)	599
Mph1103I	ATGCAT	1 cut(s)	343
MscI	TGGCCA	1 cut(s)	599
MseI	TTAA	3 cut(s)	548, 575, 889
Msp20I	TGGCCA	1 cut(s)	599
MspI	CCGG	2 cut(s)	378, 515
MspR9I	CCNGG	1 cut(s)	515
MwoI	GCNNNNNNNGC	5 cut(s)	67, 215, 224, 566, 615
NciI	CCSGG	1 cut(s)	515
NdeI	CATATG	2 cut(s)	541, 694
NdeII	GATC	1 cut(s)	306
NlaIII	CATG	4 cut(s)	86, 622, 629, 738
NlaIV	GGNNCC	8 cut(s)	143, 256, 382, 523, 537, 631, 660, 723
NmuCI	GTSAC	3 cut(s)	466, 578, 700
NsiI	ATGCAT	1 cut(s)	343
NspI	RCATGY	2 cut(s)	622, 738
PinAI	ACCGGT	1 cut(s)	377
PkrI	GCNGC	1 cut(s)	799
PleI	GAGTC	1 cut(s)	396
PpsI	GAGTC	1 cut(s)	396
Ppu21I	YACGTR	2 cut(s)	387, 781
Psp124BI	GAGCTC	1 cut(s)	63
PspN4I	GGNNCC	8 cut(s)	143, 256, 382, 523, 537, 631, 660, 723
PspPI	GGNCC	2 cut(s)	380, 658
PsuI	RGATCY	1 cut(s)	306
RsaI	GTAC	2 cut(s)	389, 783
RsaNI	GTAC	2 cut(s)	388, 782
SacI	GAGCTC	1 cut(s)	63
SaqAI	TTAA	3 cut(s)	548, 575, 889
SatI	GCNGC	1 cut(s)	798
Sau3AI	GATC	1 cut(s)	306
Sau96I	GGNCC	2 cut(s)	380, 658
SchI	GAGTC	1 cut(s)	396
ScrFI	CCNGG	1 cut(s)	515
SduI	GDGCHC	3 cut(s)	63, 229, 821
SfaNI	GCATC	2 cut(s)	328, 451
SinI	GGWCC	2 cut(s)	380, 658
SnaBI	TACGTA	1 cut(s)	781
SpeI	ACTAGT	1 cut(s)	758
Sse9I	AATT	3 cut(s)	174, 572, 775
SsiI	CCGC	2 cut(s)	464, 857
SspMI	CTAG	5 cut(s)	38, 95, 362, 759, 822
SstI	GAGCTC	1 cut(s)	63
StyD4I	CCNGG	1 cut(s)	513
StyI	CCWWGG	1 cut(s)	361
TaaI	ACNGT	3 cut(s)	89, 331, 637
TaiI	ACGT	2 cut(s)	389, 783
TaqI	TCGA	2 cut(s)	317, 400
TasI	AATT	3 cut(s)	174, 572, 775
Tru1I	TTAA	3 cut(s)	548, 575, 889
Tru9I	TTAA	3 cut(s)	548, 575, 889
TseFI	GTSAC	3 cut(s)	466, 578, 700
TseI	GCWGC	1 cut(s)	797
Tsp45I	GTSAC	3 cut(s)	466, 578, 700
TspDTI	ATGAA	4 cut(s)	337, 614, 692, 711
VneI	GTGCAC	1 cut(s)	817
VpaK11BI	GGWCC	2 cut(s)	380, 658
XceI	RCATGY	2 cut(s)	622, 738
XcmI	CCANNNNNNNNNTGG	1 cut(s)	403
XmaJI	CCTAGG	1 cut(s)	361
XspI	CTAG	5 cut(s)	38, 95, 362, 759, 822
Zsp2I	ATGCAT	1 cut(s)	343

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.