Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0001249

Physical Location & Seq

Genomic Coordinates Reverse (-)

68195932 .. 68197059

Gene Structure 1128 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG446700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 915 bp

ATGTATGAATATCAGGAGGGTTACATGGTACCGCCCAACCCCAAAGTGGAAGCAGTAACCAGAGAAAAGCTCCCTAAGCCCATAGTCTTCCACGACGGCCGCCTAGTCCAAAAGCCTACACCTCTCATGGCCCTCCTTACCATCCTCTGGCTCCCCATCGGCTTCTTCCTCGCCTGCCTCCGAATCGCCGCCGGCTCCCTCCTACCCATGCCAGTCGTCTATTATGCCTTCTGGGTCCTCGGTGTCCGTGTCACTGTTAAGGGCACCCCACCCCCTCCGGCCAAAAAATCCACCGGCCAGTCCGGCGTCCTCTTCATCTGCTCCCACCGCACCCTCCTCGACCCCATCTTCCTCTCCACCGCCCTCGGCCGCCCCATCCCCGCCGTCACCTACTCCGTCTCTCGTCTGTCGGAGTTCATCTCCCCCATCAAGACCGTTCGCCTCAACCGCGACCGCGCCAAAGACGCCGCCATGATCAAGAAGCTACTAGAAGAAGGTGACCTTGCAATCTGCCCCGAGGGGACCACCTGCCGGGAGCCGTTTCTGTTGAGGTTCTCCGCGCTTTTTGCTGAGCTAACCGACGAGCTCGTTCCGGTGGCGATGGTGAATAAGATGACCATGTTCCACGGGACGACGGCGCGTGGGTGGAAGGGAATGGACCCTTTTTACTTCTTCATGAACCCTAGCCCAGAATACGAGGTCACATTTTTGAACAAGCTGCCAGCAGAGTTGACTTGCGGGGCGGGCAAGTCGAGCCATGAGGTGGCGAATTATATACAGAGGGCTATAGCGGCAAGCCTTTCGTATGATATCACTAGTTTTACGAGGAAAGACAAATATAGGGCTCTGGCTGGGAACGATGGCTCTGTGGTTGAGAAACCTGTGCTGCAACCCAACAAAGTCATGGGGTGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0006793 GO:0006796 GO:0007275 GO:0008150 GO:0008152 GO:0008374 GO:0009058 GO:0009059 GO:0009791 GO:0009908 GO:0009987 GO:0010143 GO:0016020 GO:0016311 GO:0016740 GO:0016746 GO:0016747 GO:0016787 GO:0016788 GO:0016791 GO:0022414 GO:0032501 GO:0032502 GO:0042578 GO:0043170 GO:0044237 GO:0048367 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090447 GO:0090567 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00561 ko00564 ko01100 ko01110 map00561 map00564 map01100 map01110

Pfam Domains

Protein Families

Acyltransferase HAD

Protein Analysis

304

Amino Acids

33.72

Weight (kDa)

9.22

Isoelectric Point (pI)

40.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Acyltransferase	PF01553	100 - 200	1e-07	Acyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001249)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g08570 FvH4_4g03930 FvH4_4g35510 FvH4_6g49610
malus_domestica	MD09G1043100.v1.1 MD12G1162100.v1.1 MD13G1082600.v1.1 MD16G1081700.v1.1 MD17G1044600.v1.1
prunus_persica	Prupe.1G264300_v2.0.a1 Prupe.3G274600_v2.0.a1
pyrus_communis	pycom111g03370 pycom16g07050
rosa_chinensis	RchiOBHm_Chr2g0169641 RchiOBHm_Chr4g0393951 RchiOBHm_Chr4g0445161 RchiOBHm_Chr6g0263921
rosa_laevigata	RLG00000005762 RLG00000009723 RLG00000014303 RLG00000021890
rosa_multiflora	Rmu_co8152054.1_g000001 Rmu_co8379785.1_g000001 Rmu_sc0000050.1_g000041 Rmu_sc0000363.1_g000001 Rmu_sc0002112.1_g000017 Rmu_sc0002720.1_g000011 Rmu_sc0013280.1_g000008
rosa_roxburghii	Rroxscaffold_176G00431300 Rroxscaffold_2G00081930 Rroxscaffold_7G00203770
rosa_rugosa	Rorug02G0541700 Rorug03G0369800.1 Rorug04G0359500 Rorug06G0006900
rosa_samantha	Rh2AG614100 Rh2BG626300 Rh2CG595600 Rh2DG637200 Rh4AG050000 Rh4AG420300 Rh4BG046400 Rh4BG432100 Rh4CG053400 Rh4CG446700 Rh4DG047000 Rh4DG428200 Rh6AG127000 Rh6BG123200 Rh6CG121700 Rh6DG109100
rosa_wichuraiana	Rw2G050890 Rw4G003950 Rw4G018340 Rw4G036040 Rw6G011030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	536
Acc36I	ACCTGC	1 cut(s)	536
Acc65I	GGTACC	1 cut(s)	28
AccB1I	GGYRCC	2 cut(s)	28, 263
AccB7I	CCANNNNNTGG	2 cut(s)	147, 763
AccII	CGCG	4 cut(s)	450, 456, 560, 640
AcoI	YGGCCR	4 cut(s)	97, 279, 295, 367
AcyI	GRCGYC	2 cut(s)	306, 465
AfaI	GTAC	1 cut(s)	30
AfiI	CCNNNNNNNGG	4 cut(s)	46, 147, 531, 763
AgsI	TTSAA	1 cut(s)	712
AhlI	ACTAGT	1 cut(s)	815
AluBI	AGCT	5 cut(s)	70, 484, 574, 586, 718
AluI	AGCT	5 cut(s)	70, 484, 574, 586, 718
Alw21I	GWGCWC	1 cut(s)	588
Alw26I	GTCTC	1 cut(s)	403
Ama87I	CYCGRG	1 cut(s)	515
AoxI	GGCC	5 cut(s)	97, 129, 279, 295, 367
ApeKI	GCWGC	2 cut(s)	718, 886
Asp718I	GGTACC	1 cut(s)	28
AspLEI	GCGC	3 cut(s)	458, 562, 640
AspS9I	GGNCC	4 cut(s)	130, 235, 522, 658
AsuC2I	CCSGG	1 cut(s)	533
AsuHPI	GGTGA	3 cut(s)	379, 509, 616
AvaI	CYCGRG	1 cut(s)	515
AvaII	GGWCC	3 cut(s)	235, 522, 658
BaeGI	GKGCMC	1 cut(s)	266
BanI	GGYRCC	2 cut(s)	28, 263
BanII	GRGCYC	2 cut(s)	588, 847
BbsI	GAAGAC	1 cut(s)	79
Bbv12I	GWGCWC	1 cut(s)	588
BbvI	GCAGC	2 cut(s)	705, 873
BccI	CCATC	7 cut(s)	149, 164, 353, 383, 434, 595, 854
BceAI	ACGGC	4 cut(s)	112, 368, 523, 651
BcgI	CGANNNNNNTGC	4 cut(s)	319, 353, 783, 817
BclI	TGATCA	1 cut(s)	474
BcnI	CCSGG	1 cut(s)	533
BcoDI	GTCTC	1 cut(s)	403
BcuI	ACTAGT	1 cut(s)	815
BfaI	CTAG	4 cut(s)	104, 488, 684, 816
BfmI	CTRYAG	1 cut(s)	786
BfuAI	ACCTGC	1 cut(s)	536
BglI	GCCNNNNNGGC	1 cut(s)	303
BisI	GCNGC	7 cut(s)	100, 189, 370, 468, 719, 792, 887
BlpI	GCTNAGC	1 cut(s)	570
BlsI	GCNGC	7 cut(s)	101, 190, 371, 469, 720, 793, 888
Bme1390I	CCNGG	1 cut(s)	533
Bme18I	GGWCC	3 cut(s)	235, 522, 658
BmeT110I	CYCGRG	1 cut(s)	515
BmgT120I	GGNCC	4 cut(s)	130, 235, 522, 658
BmiI	GGNNCC	8 cut(s)	30, 152, 196, 236, 265, 523, 537, 660
BmrFI	CCNGG	1 cut(s)	533
BpiI	GAAGAC	1 cut(s)	79
BplI	GAGNNNNNCTC	4 cut(s)	54, 86, 404, 436
Bpu10I	CCTNAGC	1 cut(s)	75
Bpu1102I	GCTNAGC	1 cut(s)	570
BpuMI	CCSGG	1 cut(s)	533
BsaHI	GRCGYC	2 cut(s)	306, 465
BsaJI	CCNNGG	4 cut(s)	238, 364, 516, 625
BsaWI	WCCGGW	1 cut(s)	592
Bsc4I	CCNNNNNNNGG	4 cut(s)	46, 147, 531, 763
Bse118I	RCCGGY	2 cut(s)	191, 293
Bse1I	ACTGG	2 cut(s)	212, 298
BseDI	CCNNGG	4 cut(s)	238, 364, 516, 625
BseGI	GGATG	2 cut(s)	141, 375
BseLI	CCNNNNNNNGG	4 cut(s)	46, 147, 531, 763
BseMII	CTCAG	1 cut(s)	561
BseNI	ACTGG	2 cut(s)	212, 298
BseRI	GAGGAG	1 cut(s)	326
BseSI	GKGCMC	1 cut(s)	266
BseX3I	CGGCCG	2 cut(s)	97, 367
BseXI	GCAGC	2 cut(s)	705, 873
BseYI	CCCAGC	1 cut(s)	851
Bsh1236I	CGCG	4 cut(s)	450, 456, 560, 640
Bsh1285I	CGRYCG	3 cut(s)	100, 370, 454
BshFI	GGCC	5 cut(s)	99, 131, 281, 297, 369
BshNI	GGYRCC	2 cut(s)	28, 263
BsiEI	CGRYCG	3 cut(s)	100, 370, 454
BsiHKAI	GWGCWC	1 cut(s)	588
BsiHKCI	CYCGRG	1 cut(s)	515
BsiSI	CCGG	6 cut(s)	192, 278, 294, 303, 532, 593
BslFI	GGGAC	2 cut(s)	535, 643
BslI	CCNNNNNNNGG	4 cut(s)	46, 147, 531, 763
BsmAI	GTCTC	1 cut(s)	403
BsmBI	CGTCTC	1 cut(s)	403
BsmFI	GGGAC	2 cut(s)	535, 643
BsnI	GGCC	5 cut(s)	99, 131, 281, 297, 369
BsoBI	CYCGRG	1 cut(s)	515
Bsp1286I	GDGCHC	3 cut(s)	266, 588, 847
Bsp143I	GATC	1 cut(s)	474
Bsp1720I	GCTNAGC	1 cut(s)	570
BspANI	GGCC	5 cut(s)	99, 131, 281, 297, 369
BspCNI	CTCAG	1 cut(s)	562
BspFNI	CGCG	4 cut(s)	450, 456, 560, 640
BspHI	TCATGA	1 cut(s)	675
BspLI	GGNNCC	8 cut(s)	30, 152, 196, 236, 265, 523, 537, 660
BspMI	ACCTGC	1 cut(s)	536
BspT107I	GGYRCC	2 cut(s)	28, 263
BsrFI	RCCGGY	2 cut(s)	191, 293
BsrI	ACTGG	2 cut(s)	212, 298
BssAI	RCCGGY	2 cut(s)	191, 293
BssECI	CCNNGG	4 cut(s)	238, 364, 516, 625
BssMI	GATC	1 cut(s)	474
BssNI	GRCGYC	2 cut(s)	306, 465
Bst4CI	ACNGT	2 cut(s)	256, 436
Bst6I	CTCTTC	1 cut(s)	317
BstACI	GRCGYC	2 cut(s)	306, 465
BstC8I	GCNNGC	5 cut(s)	175, 193, 723, 745, 796
BstDEI	CTNAG	2 cut(s)	75, 570
BstDSI	CCRYGG	1 cut(s)	625
BstEII	GGTNACC	1 cut(s)	497
BstF5I	GGATG	2 cut(s)	141, 375
BstFNI	CGCG	4 cut(s)	450, 456, 560, 640
BstHHI	GCGC	3 cut(s)	458, 562, 640
BstKTI	GATC	1 cut(s)	477
BstMAI	GTCTC	1 cut(s)	403
BstMBI	GATC	1 cut(s)	474
BstMCI	CGRYCG	3 cut(s)	100, 370, 454
BstMWI	GCNNNNNNNGC	9 cut(s)	76, 303, 327, 447, 464, 566, 744, 753, 791
BstPI	GGTNACC	1 cut(s)	497
BstSCI	CCNGG	1 cut(s)	531
BstSFI	CTRYAG	1 cut(s)	786
BstSLI	GKGCMC	1 cut(s)	266
BstUI	CGCG	4 cut(s)	450, 456, 560, 640
BstV1I	GCAGC	2 cut(s)	705, 873
BstV2I	GAAGAC	1 cut(s)	79
BstZI	CGGCCG	2 cut(s)	97, 367
BsuRI	GGCC	5 cut(s)	99, 131, 281, 297, 369
BtgI	CCRYGG	1 cut(s)	625
BtgZI	GCGATG	1 cut(s)	614
BtsCI	GGATG	2 cut(s)	141, 375
BtsIMutI	CAGTG	1 cut(s)	252
BveI	ACCTGC	1 cut(s)	536
Cac8I	GCNNGC	5 cut(s)	175, 193, 723, 745, 796
CciI	TCATGA	1 cut(s)	675
CfoI	GCGC	3 cut(s)	458, 562, 640
Cfr10I	RCCGGY	2 cut(s)	191, 293
Cfr13I	GGNCC	4 cut(s)	130, 235, 522, 658
CseI	GACGC	2 cut(s)	295, 473
Csp6I	GTAC	1 cut(s)	29
CviAII	CATG	8 cut(s)	25, 127, 208, 472, 619, 676, 758, 904
CviQI	GTAC	1 cut(s)	29
DdeI	CTNAG	2 cut(s)	75, 570
DpnI	GATC	1 cut(s)	476
DpnII	GATC	1 cut(s)	474
EaeI	YGGCCR	4 cut(s)	97, 279, 295, 367
EagI	CGGCCG	2 cut(s)	97, 367
Eam1104I	CTCTTC	1 cut(s)	317
EarI	CTCTTC	1 cut(s)	317
Ecl136II	GAGCTC	1 cut(s)	586
EclXI	CGGCCG	2 cut(s)	97, 367
Eco24I	GRGCYC	2 cut(s)	588, 847
Eco32I	GATATC	1 cut(s)	811
Eco47I	GGWCC	3 cut(s)	235, 522, 658
Eco52I	CGGCCG	2 cut(s)	97, 367
Eco53kI	GAGCTC	1 cut(s)	586
Eco88I	CYCGRG	1 cut(s)	515
Eco91I	GGTNACC	1 cut(s)	497
EcoICRI	GAGCTC	1 cut(s)	586
EcoO109I	RGGNCCY	1 cut(s)	235
EcoO65I	GGTNACC	1 cut(s)	497
EcoRV	GATATC	1 cut(s)	811
EcoT38I	GRGCYC	2 cut(s)	588, 847
Esp3I	CGTCTC	1 cut(s)	403
FaeI	CATG	8 cut(s)	28, 130, 211, 475, 622, 679, 761, 907
FalI	AAGNNNNNCTT	2 cut(s)	486, 518
FaqI	GGGAC	2 cut(s)	535, 643
FatI	CATG	8 cut(s)	24, 126, 207, 471, 618, 675, 757, 903
FauI	CCCGC	3 cut(s)	388, 731, 736
FbaI	TGATCA	1 cut(s)	474
Fnu4HI	GCNGC	7 cut(s)	100, 189, 370, 468, 719, 792, 887
FokI	GGATG	2 cut(s)	128, 362
FriOI	GRGCYC	2 cut(s)	588, 847
Fsp4HI	GCNGC	7 cut(s)	100, 189, 370, 468, 719, 792, 887
FspBI	CTAG	4 cut(s)	104, 488, 684, 816
GlaI	GCGC	3 cut(s)	457, 561, 639
GluI	GCNGC	7 cut(s)	100, 189, 370, 468, 719, 792, 887
GsaI	CCCAGC	1 cut(s)	855
HaeIII	GGCC	5 cut(s)	99, 131, 281, 297, 369
HapII	CCGG	6 cut(s)	192, 278, 294, 303, 532, 593
HgaI	GACGC	2 cut(s)	295, 473
HhaI	GCGC	3 cut(s)	458, 562, 640
Hin1I	GRCGYC	2 cut(s)	306, 465
Hin1II	CATG	8 cut(s)	28, 130, 211, 475, 622, 679, 761, 907
Hin6I	GCGC	3 cut(s)	456, 560, 638
HinP1I	GCGC	3 cut(s)	456, 560, 638
HincII	GTYRAC	1 cut(s)	732
HindII	GTYRAC	1 cut(s)	732
HinfI	GANTC	1 cut(s)	183
HpaII	CCGG	6 cut(s)	192, 278, 294, 303, 532, 593
HphI	GGTGA	3 cut(s)	379, 509, 616
Hpy166II	GTNNAC	1 cut(s)	732
Hpy188I	TCNGA	2 cut(s)	182, 412
Hpy188III	TCNNGA	4 cut(s)	14, 430, 478, 676
Hpy8I	GTNNAC	1 cut(s)	732
Hpy99I	CGWCG	3 cut(s)	98, 584, 637
HpyAV	CCTTC	3 cut(s)	238, 488, 643
HpyCH4III	ACNGT	2 cut(s)	256, 436
HpyCH4V	TGCA	2 cut(s)	506, 889
HpyF10VI	GCNNNNNNNGC	9 cut(s)	76, 303, 327, 447, 464, 566, 744, 753, 791
HpyF3I	CTNAG	2 cut(s)	75, 570
Hsp92I	GRCGYC	2 cut(s)	306, 465
Hsp92II	CATG	8 cut(s)	28, 130, 211, 475, 622, 679, 761, 907
HspAI	GCGC	3 cut(s)	456, 560, 638
KpnI	GGTACC	1 cut(s)	32
KroI	GCCGGC	1 cut(s)	191
KroNI	GCCGGC	1 cut(s)	193
Ksp22I	TGATCA	1 cut(s)	474
Kzo9I	GATC	1 cut(s)	474
LmnI	GCTCC	5 cut(s)	75, 156, 200, 326, 535
Lsp1109I	GCAGC	2 cut(s)	705, 873
MaeI	CTAG	4 cut(s)	104, 488, 684, 816
MaeIII	GTNAC	6 cut(s)	20, 55, 250, 385, 497, 700
MalI	GATC	1 cut(s)	476
MboI	GATC	1 cut(s)	474
MboII	GAAGA	6 cut(s)	79, 157, 304, 340, 503, 664
MhlI	GDGCHC	3 cut(s)	266, 588, 847
MluCI	AATT	1 cut(s)	769
MmeI	TCCRAC	1 cut(s)	390
MroNI	GCCGGC	1 cut(s)	191
MseI	TTAA	1 cut(s)	258
MspI	CCGG	6 cut(s)	192, 278, 294, 303, 532, 593
MspR9I	CCNGG	1 cut(s)	533
MvnI	CGCG	4 cut(s)	450, 456, 560, 640
MwoI	GCNNNNNNNGC	9 cut(s)	76, 303, 327, 447, 464, 566, 744, 753, 791
NaeI	GCCGGC	1 cut(s)	193
NciI	CCSGG	1 cut(s)	533
NdeII	GATC	1 cut(s)	474
NgoMIV	GCCGGC	1 cut(s)	191
NlaIII	CATG	8 cut(s)	28, 130, 211, 475, 622, 679, 761, 907
NlaIV	GGNNCC	8 cut(s)	30, 152, 196, 236, 265, 523, 537, 660
NmeAIII	GCCGAG	1 cut(s)	345
NmuCI	GTSAC	4 cut(s)	250, 385, 497, 700
PagI	TCATGA	1 cut(s)	675
PaqCI	CACCTGC	1 cut(s)	536
PdiI	GCCGGC	1 cut(s)	193
PfeI	GAWTC	1 cut(s)	183
PflMI	CCANNNNNTGG	2 cut(s)	147, 763
PkrI	GCNGC	7 cut(s)	101, 190, 371, 469, 720, 793, 888
PpuMI	RGGWCCY	1 cut(s)	235
Psp124BI	GAGCTC	1 cut(s)	588
Psp5II	RGGWCCY	1 cut(s)	235
PspEI	GGTNACC	1 cut(s)	497
PspFI	CCCAGC	1 cut(s)	851
PspN4I	GGNNCC	8 cut(s)	30, 152, 196, 236, 265, 523, 537, 660
PspPI	GGNCC	4 cut(s)	130, 235, 522, 658
PspPPI	RGGWCCY	1 cut(s)	235
RsaI	GTAC	1 cut(s)	30
RsaNI	GTAC	1 cut(s)	29
SacI	GAGCTC	1 cut(s)	588
SaqAI	TTAA	1 cut(s)	258
SatI	GCNGC	7 cut(s)	100, 189, 370, 468, 719, 792, 887
Sau3AI	GATC	1 cut(s)	474
Sau96I	GGNCC	4 cut(s)	130, 235, 522, 658
ScrFI	CCNGG	1 cut(s)	533
SduI	GDGCHC	3 cut(s)	266, 588, 847
SfcI	CTRYAG	1 cut(s)	786
SinI	GGWCC	3 cut(s)	235, 522, 658
SpeI	ACTAGT	1 cut(s)	815
Sse9I	AATT	1 cut(s)	769
SspMI	CTAG	4 cut(s)	104, 488, 684, 816
SstI	GAGCTC	1 cut(s)	588
StyD4I	CCNGG	1 cut(s)	531
TaaI	ACNGT	2 cut(s)	256, 436
TaqI	TCGA	2 cut(s)	339, 752
TasI	AATT	1 cut(s)	769
TauI	GCSGC	5 cut(s)	102, 191, 372, 470, 794
TfiI	GAWTC	1 cut(s)	183
Tru1I	TTAA	1 cut(s)	258
Tru9I	TTAA	1 cut(s)	258
TscAI	CASTG	1 cut(s)	259
TseFI	GTSAC	4 cut(s)	250, 385, 497, 700
TseI	GCWGC	2 cut(s)	718, 886
Tsp45I	GTSAC	4 cut(s)	250, 385, 497, 700
TspDTI	ATGAA	5 cut(s)	21, 304, 406, 664, 692
TspGWI	ACGGA	2 cut(s)	236, 385
TspRI	CASTG	1 cut(s)	259
Van91I	CCANNNNNTGG	2 cut(s)	147, 763
VpaK11BI	GGWCC	3 cut(s)	235, 522, 658
XcmI	CCANNNNNNNNNTGG	2 cut(s)	43, 901
XspI	CTAG	4 cut(s)	104, 488, 684, 816

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.