Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000363.1

Orthogroup ID

OG0001249

Physical Location & Seq

Genomic Coordinates Forward (+)

14332 .. 14925

Gene Structure 594 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000363.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

atgttgctccttcctcaaaacctcgcctactataccctttgggcacttggtattcatgtcactgtgaatggaccccacctacattggctagacactattggtcgtaaaaactcgggtcagatctttatctcaaaccatagaaccgttcttgatgcatttttcatctatcttgccctaggctgcccaataaccggtctcacatactcgagcactcgactcttggagttcctttcaccattcaatgttgtccgaataagtcgtaaccaagaacaggatgtggccacgatcaagaagcttatacaagaaggtaataacatatgtctttgcccgaaaggaaccacttgtagggaaccatatgttttaaggttttcggcactatttgctgaattaagtgaccaacttgtccctgtggccatcatcagccaccaaagcatgtttcatggaaccacagttggagggtggaaagcaatggatccgtgtttcttcgcaatgaacccgtttccatcatatgaaatcacattcttaaataagttggctccggaaaaaacatgcaatgctacttctggaaagactagctttgaggtagcaaattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0006793 GO:0006796 GO:0007275 GO:0008150 GO:0008152 GO:0008374 GO:0009058 GO:0009059 GO:0009791 GO:0009908 GO:0009987 GO:0010143 GO:0016020 GO:0016311 GO:0016740 GO:0016746 GO:0016747 GO:0016787 GO:0016788 GO:0016791 GO:0022414 GO:0032501 GO:0032502 GO:0042578 GO:0043170 GO:0044237 GO:0048367 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090447 GO:0090567 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00561 ko00564 ko01100 ko01110 map00561 map00564 map01100 map01110

Pfam Domains

Protein Families

Acyltransferase HAD

Protein Analysis

197

Amino Acids

22.02

Weight (kDa)

8.22

Isoelectric Point (pI)

34.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001249)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g08570 FvH4_4g03930 FvH4_4g35510 FvH4_6g49610
malus_domestica	MD09G1043100.v1.1 MD12G1162100.v1.1 MD13G1082600.v1.1 MD16G1081700.v1.1 MD17G1044600.v1.1
prunus_persica	Prupe.1G264300_v2.0.a1 Prupe.3G274600_v2.0.a1
pyrus_communis	pycom111g03370 pycom16g07050
rosa_chinensis	RchiOBHm_Chr2g0169641 RchiOBHm_Chr4g0393951 RchiOBHm_Chr4g0445161 RchiOBHm_Chr6g0263921
rosa_laevigata	RLG00000005762 RLG00000009723 RLG00000014303 RLG00000021890
rosa_multiflora	Rmu_co8152054.1_g000001 Rmu_co8379785.1_g000001 Rmu_sc0000050.1_g000041 Rmu_sc0000363.1_g000001 Rmu_sc0002112.1_g000017 Rmu_sc0002720.1_g000011 Rmu_sc0013280.1_g000008
rosa_roxburghii	Rroxscaffold_176G00431300 Rroxscaffold_2G00081930 Rroxscaffold_7G00203770
rosa_rugosa	Rorug02G0541700 Rorug03G0369800.1 Rorug04G0359500 Rorug06G0006900
rosa_samantha	Rh2AG614100 Rh2BG626300 Rh2CG595600 Rh2DG637200 Rh4AG050000 Rh4AG420300 Rh4BG046400 Rh4BG432100 Rh4CG053400 Rh4CG446700 Rh4DG047000 Rh4DG428200 Rh6AG127000 Rh6BG123200 Rh6CG121700 Rh6DG109100
rosa_wichuraiana	Rw2G050890 Rw4G003950 Rw4G018340 Rw4G036040 Rw6G011030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	401
AccIII	TCCGGA	1 cut(s)	538
AclWI	GGATC	2 cut(s)	467, 480
AcoI	YGGCCR	2 cut(s)	279, 411
AfiI	CCNNNNNNNGG	3 cut(s)	191, 271, 345
AgeI	ACCGGT	1 cut(s)	191
AgsI	TTSAA	1 cut(s)	241
AjuI	GAANNNNNNNTTGG	2 cut(s)	420, 452
AluBI	AGCT	2 cut(s)	295, 576
AluI	AGCT	2 cut(s)	295, 576
Alw21I	GWGCWC	1 cut(s)	212
Alw26I	GTCTC	1 cut(s)	200
AlwI	GGATC	2 cut(s)	467, 480
Ama87I	CYCGRG	2 cut(s)	112, 205
Aor13HI	TCCGGA	1 cut(s)	538
AoxI	GGCC	2 cut(s)	279, 411
ApeKI	GCWGC	1 cut(s)	180
AsiGI	ACCGGT	1 cut(s)	191
AspA2I	CCTAGG	1 cut(s)	175
AspS9I	GGNCC	1 cut(s)	71
AsuHPI	GGTGA	1 cut(s)	225
AvaI	CYCGRG	2 cut(s)	112, 205
AvaII	GGWCC	1 cut(s)	71
AvrII	CCTAGG	1 cut(s)	175
BaeGI	GKGCMC	1 cut(s)	46
BalI	TGGCCA	2 cut(s)	281, 413
BamHI	GGATCC	1 cut(s)	472
Bbv12I	GWGCWC	1 cut(s)	212
BbvI	GCAGC	1 cut(s)	167
BccI	CCATC	2 cut(s)	422, 511
BcoDI	GTCTC	1 cut(s)	200
BfaI	CTAG	3 cut(s)	89, 176, 573
BglII	AGATCT	1 cut(s)	120
BisI	GCNGC	1 cut(s)	181
BlnI	CCTAGG	1 cut(s)	175
BlsI	GCNGC	1 cut(s)	182
Bme18I	GGWCC	1 cut(s)	71
BmeT110I	CYCGRG	2 cut(s)	112, 205
BmgT120I	GGNCC	1 cut(s)	71
BmiI	GGNNCC	6 cut(s)	73, 337, 351, 445, 474, 537
BmsI	GCATC	1 cut(s)	142
BsaBI	GATNNNNATC	1 cut(s)	125
BsaI	GGTCTC	1 cut(s)	200
BsaJI	CCNNGG	1 cut(s)	175
BsaWI	WCCGGW	2 cut(s)	191, 538
Bsc4I	CCNNNNNNNGG	3 cut(s)	191, 271, 345
Bse118I	RCCGGY	1 cut(s)	191
Bse3DI	GCAATG	3 cut(s)	474, 495, 559
Bse8I	GATNNNNATC	1 cut(s)	125
BseAI	TCCGGA	1 cut(s)	538
BseDI	CCNNGG	1 cut(s)	175
BseGI	GGATG	1 cut(s)	280
BseJI	GATNNNNATC	1 cut(s)	125
BseLI	CCNNNNNNNGG	3 cut(s)	191, 271, 345
BseMI	GCAATG	3 cut(s)	474, 495, 559
BseSI	GKGCMC	1 cut(s)	46
BseXI	GCAGC	1 cut(s)	167
BshFI	GGCC	2 cut(s)	281, 413
BshTI	ACCGGT	1 cut(s)	191
BsiHKAI	GWGCWC	1 cut(s)	212
BsiHKCI	CYCGRG	2 cut(s)	112, 205
BsiSI	CCGG	2 cut(s)	192, 539
BslFI	GGGAC	1 cut(s)	389
BslI	CCNNNNNNNGG	3 cut(s)	191, 271, 345
BsmAI	GTCTC	1 cut(s)	200
BsmFI	GGGAC	1 cut(s)	389
BsnI	GGCC	2 cut(s)	281, 413
Bso31I	GGTCTC	1 cut(s)	200
BsoBI	CYCGRG	2 cut(s)	112, 205
Bsp1286I	GDGCHC	2 cut(s)	46, 212
Bsp13I	TCCGGA	1 cut(s)	538
Bsp143I	GATC	3 cut(s)	120, 285, 472
BspANI	GGCC	2 cut(s)	281, 413
BspEI	TCCGGA	1 cut(s)	538
BspLI	GGNNCC	6 cut(s)	73, 337, 351, 445, 474, 537
BspPI	GGATC	2 cut(s)	467, 480
BspTNI	GGTCTC	1 cut(s)	200
BsrDI	GCAATG	3 cut(s)	474, 495, 559
BsrFI	RCCGGY	1 cut(s)	191
BssAI	RCCGGY	1 cut(s)	191
BssECI	CCNNGG	1 cut(s)	175
BssMI	GATC	3 cut(s)	120, 285, 472
BssT1I	CCWWGG	1 cut(s)	175
Bst4CI	ACNGT	3 cut(s)	64, 145, 451
BstAPI	GCANNNNNTGC	1 cut(s)	380
BstF5I	GGATG	1 cut(s)	280
BstKTI	GATC	3 cut(s)	123, 288, 475
BstMAI	GTCTC	1 cut(s)	200
BstMBI	GATC	3 cut(s)	120, 285, 472
BstMWI	GCNNNNNNNGC	2 cut(s)	380, 429
BstNSI	RCATGY	2 cut(s)	436, 552
BstSLI	GKGCMC	1 cut(s)	46
BstV1I	GCAGC	1 cut(s)	167
BstX2I	RGATCY	2 cut(s)	120, 472
BstYI	RGATCY	2 cut(s)	120, 472
BsuRI	GGCC	2 cut(s)	281, 413
BtsCI	GGATG	1 cut(s)	280
BtsIMutI	CAGTG	1 cut(s)	60
Cfr10I	RCCGGY	1 cut(s)	191
Cfr13I	GGNCC	1 cut(s)	71
CspAI	ACCGGT	1 cut(s)	191
CspCI	CAANNNNNGTGG	2 cut(s)	65, 100
CviAII	CATG	4 cut(s)	56, 433, 440, 549
CviJI	RGCY	8 cut(s)	88, 180, 281, 295, 413, 423, 536, 576
CviKI_1	RGCY	8 cut(s)	88, 180, 281, 295, 413, 423, 536, 576
DpnI	GATC	3 cut(s)	122, 287, 474
DpnII	GATC	3 cut(s)	120, 285, 472
DrdI	GACNNNNNNGTC	1 cut(s)	401
DseDI	GACNNNNNNGTC	1 cut(s)	401
EaeI	YGGCCR	2 cut(s)	279, 411
Eco130I	CCWWGG	1 cut(s)	175
Eco31I	GGTCTC	1 cut(s)	200
Eco47I	GGWCC	1 cut(s)	71
Eco88I	CYCGRG	2 cut(s)	112, 205
EcoT14I	CCWWGG	1 cut(s)	175
EcoT22I	ATGCAT	1 cut(s)	157
ErhI	CCWWGG	1 cut(s)	175
FaeI	CATG	4 cut(s)	59, 436, 443, 552
FalI	AAGNNNNNCTT	2 cut(s)	560, 592
FaqI	GGGAC	1 cut(s)	389
FatI	CATG	4 cut(s)	55, 432, 439, 548
FauNDI	CATATG	3 cut(s)	317, 355, 508
Fnu4HI	GCNGC	1 cut(s)	181
FokI	GGATG	1 cut(s)	287
Fsp4HI	GCNGC	1 cut(s)	181
FspBI	CTAG	3 cut(s)	89, 176, 573
GluI	GCNGC	1 cut(s)	181
HaeIII	GGCC	2 cut(s)	281, 413
HapII	CCGG	2 cut(s)	192, 539
Hin1II	CATG	4 cut(s)	59, 436, 443, 552
HindIII	AAGCTT	1 cut(s)	293
HinfI	GANTC	1 cut(s)	216
HpaII	CCGG	2 cut(s)	192, 539
HphI	GGTGA	1 cut(s)	225
Hpy188I	TCNGA	2 cut(s)	120, 251
Hpy188III	TCNNGA	4 cut(s)	149, 289, 539, 564
HpyAV	CCTTC	2 cut(s)	20, 299
HpyCH4III	ACNGT	3 cut(s)	64, 145, 451
HpyCH4V	TGCA	2 cut(s)	155, 552
HpyF10VI	GCNNNNNNNGC	2 cut(s)	380, 429
Hsp92II	CATG	4 cut(s)	59, 436, 443, 552
Kpn2I	TCCGGA	1 cut(s)	538
Kzo9I	GATC	3 cut(s)	120, 285, 472
LmnI	GCTCC	2 cut(s)	12, 541
LpnPI	CCDG	5 cut(s)	205, 257, 420, 549, 552
Lsp1109I	GCAGC	1 cut(s)	167
LweI	GCATC	1 cut(s)	142
MaeI	CTAG	3 cut(s)	89, 176, 573
MaeIII	GTNAC	3 cut(s)	58, 260, 392
MalI	GATC	3 cut(s)	122, 287, 474
MboI	GATC	3 cut(s)	120, 285, 472
MboII	GAAGA	1 cut(s)	475
MflI	RGATCY	2 cut(s)	120, 472
MhlI	GDGCHC	2 cut(s)	46, 212
MlsI	TGGCCA	2 cut(s)	281, 413
MluCI	AATT	2 cut(s)	386, 589
MluNI	TGGCCA	2 cut(s)	281, 413
MlyI	GAGTC	1 cut(s)	210
MmeI	TCCRAC	1 cut(s)	433
MnlI	CCTC	4 cut(s)	24, 32, 449, 574
Mox20I	TGGCCA	2 cut(s)	281, 413
Mph1103I	ATGCAT	1 cut(s)	157
MroI	TCCGGA	1 cut(s)	538
MscI	TGGCCA	2 cut(s)	281, 413
MseI	TTAA	4 cut(s)	362, 389, 524, 592
Msp20I	TGGCCA	2 cut(s)	281, 413
MspI	CCGG	2 cut(s)	192, 539
MwoI	GCNNNNNNNGC	2 cut(s)	380, 429
NdeI	CATATG	3 cut(s)	317, 355, 508
NdeII	GATC	3 cut(s)	120, 285, 472
NlaIII	CATG	4 cut(s)	59, 436, 443, 552
NlaIV	GGNNCC	6 cut(s)	73, 337, 351, 445, 474, 537
NmuCI	GTSAC	2 cut(s)	58, 392
NsiI	ATGCAT	1 cut(s)	157
NspI	RCATGY	2 cut(s)	436, 552
PaeR7I	CTCGAG	1 cut(s)	205
PinAI	ACCGGT	1 cut(s)	191
PkrI	GCNGC	1 cut(s)	182
PleI	GAGTC	1 cut(s)	210
PpsI	GAGTC	1 cut(s)	210
PspN4I	GGNNCC	6 cut(s)	73, 337, 351, 445, 474, 537
PspPI	GGNCC	1 cut(s)	71
PspXI	VCTCGAGB	1 cut(s)	205
PsuI	RGATCY	2 cut(s)	120, 472
SaqAI	TTAA	4 cut(s)	362, 389, 524, 592
SatI	GCNGC	1 cut(s)	181
Sau3AI	GATC	3 cut(s)	120, 285, 472
Sau96I	GGNCC	1 cut(s)	71
SchI	GAGTC	1 cut(s)	210
SduI	GDGCHC	2 cut(s)	46, 212
SetI	ASST	7 cut(s)	24, 81, 297, 310, 368, 578, 585
SfaNI	GCATC	1 cut(s)	142
Sfr274I	CTCGAG	1 cut(s)	205
SinI	GGWCC	1 cut(s)	71
SlaI	CTCGAG	1 cut(s)	205
SmlI	CTYRAG	1 cut(s)	205
SmoI	CTYRAG	1 cut(s)	205
Sse9I	AATT	2 cut(s)	386, 589
SspMI	CTAG	3 cut(s)	89, 176, 573
StyI	CCWWGG	1 cut(s)	175
TaaI	ACNGT	3 cut(s)	64, 145, 451
TaqI	TCGA	2 cut(s)	206, 214
TasI	AATT	2 cut(s)	386, 589
Tru1I	TTAA	4 cut(s)	362, 389, 524, 592
Tru9I	TTAA	4 cut(s)	362, 389, 524, 592
TscAI	CASTG	1 cut(s)	67
TseFI	GTSAC	2 cut(s)	58, 392
TseI	GCWGC	1 cut(s)	180
Tsp45I	GTSAC	2 cut(s)	58, 392
TspDTI	ATGAA	5 cut(s)	44, 151, 428, 506, 525
TspGWI	ACGGA	1 cut(s)	465
TspRI	CASTG	1 cut(s)	67
VpaK11BI	GGWCC	1 cut(s)	71
XceI	RCATGY	2 cut(s)	436, 552
XhoI	CTCGAG	1 cut(s)	205
XmaJI	CCTAGG	1 cut(s)	175
XspI	CTAG	3 cut(s)	89, 176, 573
Zsp2I	ATGCAT	1 cut(s)	157

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.