Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0001249

Physical Location & Seq

Genomic Coordinates Reverse (-)

40770202 .. 40782484

Gene Structure 12283 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G018340.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1098 bp

ATGGCCATATTCCTAACTATTGACAAATGCAAATCAAATTATCGGAAAAGCGTGACGGTTGTGGTAGCTGACATGGTTGGATGCTTGCTCAGAGATGATAGCTCTTTCCCTTACTTTTCCCTCATCGCGTTTGATGTTGGTGGGATCGTAAGGCTCCTCTTGCTACTCTTAGTTTGGCGGTGTATTTTCACTGCAAGTATTCCGAGGATCATGGTGGAGCCATTTCTCAATAGTTACCTTGAATTTGATATGGTTTTAGGGACTCAGATAGCAACTTATAATGGTATGGCCACTGGCTTTCATAAAGCAGACGCTCTTCATAAGGCTCTCGGAGTGAAAGCCCAGATAGATATTGGAATTGGCAATAAGCACACTGATATATGGCATGCGCAAGTGCCAGCTAAACCCACACTAGAAGCTGTGAGAAGGGAAGAGCTCCCAAAGCCCATCATCTTCCATGACGGTCGCCTAGTCCAAAAGCCAACACCTCTCTTAGCGTTCCTCATCATTCTTTGGTTCCCCATAGGTTTCTTCATCACTTGCTGGCGAATTGCTATTATGTTGCTCCTTCCTCAAAACCTCGCCTACTATGCCCTTTGGGCACTTGGTATTCATATCTTTATCTCAAACCATAGAACCGTTCTTGATGCATTTTTCATCTATCTTGCCCTAGGCTGCCCAATAACCGGTCTCACATACTCGAGCACTCGACTCTTGGAGTTCCTTTCACCATTCAATGTTGTCCGAATAAGTCGTAACCAAGAACAGGATGTGGCCACGATCAAGAAGCTTATACAAGAAGGTAATAACATATGTCTTTGCCCGAAAGGAACCACTTGTAGGGAACCATATGTTTTAAGGTTTTCGGCACTATTTGCTGAATTAAGGTGGAAAGCAATGGATCCGTGTTTCTTCGCAATGAACCCGTTTCCATCATATGAAATCACATTCTTAAATAAGTTGGCTCCGGAAAAAACATGCAATGCTACTTCTGGAAAGACTACTGCAACTCTTTCTTACAAGTGCACTAGGATTACAAGGAAGGACAAGTATTGGGTTCTTGCGGGGAATGATGGGAATGTGGTTAGAACAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0006793 GO:0006796 GO:0007275 GO:0008150 GO:0008152 GO:0008374 GO:0009058 GO:0009059 GO:0009791 GO:0009908 GO:0009987 GO:0010143 GO:0016020 GO:0016311 GO:0016740 GO:0016746 GO:0016747 GO:0016787 GO:0016788 GO:0016791 GO:0022414 GO:0032501 GO:0032502 GO:0042578 GO:0043170 GO:0044237 GO:0048367 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090447 GO:0090567 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00561 ko00564 ko01100 ko01110 map00561 map00564 map01100 map01110

Pfam Domains

Protein Families

Acyltransferase HAD

Protein Analysis

365

Amino Acids

41.25

Weight (kDa)

9.19

Isoelectric Point (pI)

35.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HAD_RAM2_N	PF23270	21 - 62	2.9e-10	Glycerol-3-phosphate acyltransferase RAM2-like, HAD-like domain
HAD_RAM2_N	PF23270	60 - 123	2.1e-10	Glycerol-3-phosphate acyltransferase RAM2-like, HAD-like domain
Acyltransferase	PF01553	206 - 295	3e-06	Acyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001249)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g08570 FvH4_4g03930 FvH4_4g35510 FvH4_6g49610
malus_domestica	MD09G1043100.v1.1 MD12G1162100.v1.1 MD13G1082600.v1.1 MD16G1081700.v1.1 MD17G1044600.v1.1
prunus_persica	Prupe.1G264300_v2.0.a1 Prupe.3G274600_v2.0.a1
pyrus_communis	pycom111g03370 pycom16g07050
rosa_chinensis	RchiOBHm_Chr2g0169641 RchiOBHm_Chr4g0393951 RchiOBHm_Chr4g0445161 RchiOBHm_Chr6g0263921
rosa_laevigata	RLG00000005762 RLG00000009723 RLG00000014303 RLG00000021890
rosa_multiflora	Rmu_co8152054.1_g000001 Rmu_co8379785.1_g000001 Rmu_sc0000050.1_g000041 Rmu_sc0000363.1_g000001 Rmu_sc0002112.1_g000017 Rmu_sc0002720.1_g000011 Rmu_sc0013280.1_g000008
rosa_roxburghii	Rroxscaffold_176G00431300 Rroxscaffold_2G00081930 Rroxscaffold_7G00203770
rosa_rugosa	Rorug02G0541700 Rorug03G0369800.1 Rorug04G0359500 Rorug06G0006900
rosa_samantha	Rh2AG614100 Rh2BG626300 Rh2CG595600 Rh2DG637200 Rh4AG050000 Rh4AG420300 Rh4BG046400 Rh4BG432100 Rh4CG053400 Rh4CG446700 Rh4DG047000 Rh4DG428200 Rh6AG127000 Rh6BG123200 Rh6CG121700 Rh6DG109100
rosa_wichuraiana	Rw2G050890 Rw4G003950 Rw4G018340 Rw4G036040 Rw6G011030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	279
Acc16I	TGCGCA	1 cut(s)	390
AccII	CGCG	1 cut(s)	128
AccIII	TCCGGA	1 cut(s)	967
AciI	CCGC	2 cut(s)	178, 1064
AclWI	GGATC	4 cut(s)	152, 215, 896, 909
AcoI	YGGCCR	3 cut(s)	3, 288, 774
AcsI	RAATTY	1 cut(s)	242
AfiI	CCNNNNNNNGG	3 cut(s)	686, 766, 840
AgeI	ACCGGT	1 cut(s)	686
AgsI	TTSAA	2 cut(s)	242, 736
AluBI	AGCT	7 cut(s)	68, 102, 401, 419, 436, 790, 1094
AluI	AGCT	7 cut(s)	68, 102, 401, 419, 436, 790, 1094
Alw21I	GWGCWC	3 cut(s)	438, 707, 1028
Alw26I	GTCTC	1 cut(s)	695
Alw44I	GTGCAC	1 cut(s)	1024
AlwI	GGATC	4 cut(s)	152, 215, 896, 909
Ama87I	CYCGRG	1 cut(s)	700
Aor13HI	TCCGGA	1 cut(s)	967
AoxI	GGCC	3 cut(s)	3, 288, 774
ApaLI	GTGCAC	1 cut(s)	1024
ApeKI	GCWGC	1 cut(s)	675
ApoI	RAATTY	1 cut(s)	242
AsiGI	ACCGGT	1 cut(s)	686
AspA2I	CCTAGG	1 cut(s)	670
AspLEI	GCGC	1 cut(s)	391
AsuHPI	GGTGA	1 cut(s)	720
AvaI	CYCGRG	1 cut(s)	700
AvrII	CCTAGG	1 cut(s)	670
BaeGI	GKGCMC	2 cut(s)	604, 1028
BalI	TGGCCA	3 cut(s)	5, 290, 776
BamHI	GGATCC	1 cut(s)	901
BanII	GRGCYC	1 cut(s)	438
Bbv12I	GWGCWC	3 cut(s)	438, 707, 1028
BbvI	GCAGC	1 cut(s)	662
BccI	CCATC	3 cut(s)	455, 940, 1067
BcoDI	GTCTC	1 cut(s)	695
BfaI	CTAG	4 cut(s)	413, 470, 671, 1029
BglI	GCCNNNNNGGC	1 cut(s)	599
BisI	GCNGC	1 cut(s)	676
BlnI	CCTAGG	1 cut(s)	670
BlsI	GCNGC	1 cut(s)	677
BmeT110I	CYCGRG	1 cut(s)	700
BmiI	GGNNCC	7 cut(s)	155, 219, 518, 832, 846, 903, 966
BmsI	GCATC	2 cut(s)	71, 637
BsaI	GGTCTC	1 cut(s)	695
BsaJI	CCNNGG	2 cut(s)	203, 670
BsaWI	WCCGGW	2 cut(s)	686, 967
Bsc4I	CCNNNNNNNGG	3 cut(s)	686, 766, 840
Bse118I	RCCGGY	1 cut(s)	686
Bse1I	ACTGG	1 cut(s)	298
Bse3DI	GCAATG	3 cut(s)	903, 924, 988
BseAI	TCCGGA	1 cut(s)	967
BseDI	CCNNGG	2 cut(s)	203, 670
BseGI	GGATG	2 cut(s)	86, 775
BseLI	CCNNNNNNNGG	3 cut(s)	686, 766, 840
BseMI	GCAATG	3 cut(s)	903, 924, 988
BseMII	CTCAG	2 cut(s)	103, 278
BseNI	ACTGG	1 cut(s)	298
BseRI	GAGGAG	1 cut(s)	146
BseSI	GKGCMC	2 cut(s)	604, 1028
BseXI	GCAGC	1 cut(s)	662
Bsh1236I	CGCG	1 cut(s)	128
Bsh1285I	CGRYCG	1 cut(s)	466
BshFI	GGCC	3 cut(s)	5, 290, 776
BshTI	ACCGGT	1 cut(s)	686
BsiEI	CGRYCG	1 cut(s)	466
BsiHKAI	GWGCWC	3 cut(s)	438, 707, 1028
BsiHKCI	CYCGRG	1 cut(s)	700
BsiSI	CCGG	2 cut(s)	687, 968
BslFI	GGGAC	1 cut(s)	274
BslI	CCNNNNNNNGG	3 cut(s)	686, 766, 840
BsmAI	GTCTC	1 cut(s)	695
BsmFI	GGGAC	1 cut(s)	274
BsnI	GGCC	3 cut(s)	5, 290, 776
Bso31I	GGTCTC	1 cut(s)	695
BsoBI	CYCGRG	1 cut(s)	700
Bsp1286I	GDGCHC	4 cut(s)	438, 604, 707, 1028
Bsp13I	TCCGGA	1 cut(s)	967
Bsp143I	GATC	4 cut(s)	144, 207, 780, 901
BspACI	CCGC	2 cut(s)	178, 1064
BspANI	GGCC	3 cut(s)	5, 290, 776
BspCNI	CTCAG	2 cut(s)	102, 277
BspEI	TCCGGA	1 cut(s)	967
BspFNI	CGCG	1 cut(s)	128
BspLI	GGNNCC	7 cut(s)	155, 219, 518, 832, 846, 903, 966
BspPI	GGATC	4 cut(s)	152, 215, 896, 909
BspQI	GCTCTTC	2 cut(s)	321, 426
BspTNI	GGTCTC	1 cut(s)	695
BsrDI	GCAATG	3 cut(s)	903, 924, 988
BsrFI	RCCGGY	1 cut(s)	686
BsrI	ACTGG	1 cut(s)	298
BssAI	RCCGGY	1 cut(s)	686
BssECI	CCNNGG	2 cut(s)	203, 670
BssMI	GATC	4 cut(s)	144, 207, 780, 901
BssT1I	CCWWGG	1 cut(s)	670
Bst4CI	ACNGT	3 cut(s)	58, 464, 640
Bst6I	CTCTTC	2 cut(s)	321, 426
BstAPI	GCANNNNNTGC	1 cut(s)	875
BstC8I	GCNNGC	4 cut(s)	86, 387, 399, 545
BstDEI	CTNAG	4 cut(s)	89, 169, 264, 493
BstF5I	GGATG	2 cut(s)	86, 775
BstFNI	CGCG	1 cut(s)	128
BstHHI	GCGC	1 cut(s)	391
BstKTI	GATC	4 cut(s)	147, 210, 783, 904
BstMAI	GTCTC	1 cut(s)	695
BstMBI	GATC	4 cut(s)	144, 207, 780, 901
BstMCI	CGRYCG	1 cut(s)	466
BstMWI	GCNNNNNNNGC	5 cut(s)	160, 442, 590, 599, 875
BstNSI	RCATGY	2 cut(s)	389, 981
BstSLI	GKGCMC	2 cut(s)	604, 1028
BstUI	CGCG	1 cut(s)	128
BstV1I	GCAGC	1 cut(s)	662
BstX2I	RGATCY	1 cut(s)	901
BstYI	RGATCY	1 cut(s)	901
BsuRI	GGCC	3 cut(s)	5, 290, 776
BtgZI	GCGATG	1 cut(s)	109
BtsCI	GGATG	2 cut(s)	86, 775
BtsI	GCAGTG	1 cut(s)	189
BtsIMutI	CAGTG	3 cut(s)	189, 291, 372
Cac8I	GCNNGC	4 cut(s)	86, 387, 399, 545
CfoI	GCGC	1 cut(s)	391
Cfr10I	RCCGGY	1 cut(s)	686
CseI	GACGC	1 cut(s)	320
CspAI	ACCGGT	1 cut(s)	686
CviAII	CATG	5 cut(s)	73, 211, 386, 458, 978
DdeI	CTNAG	4 cut(s)	89, 169, 264, 493
DpnI	GATC	4 cut(s)	146, 209, 782, 903
DpnII	GATC	4 cut(s)	144, 207, 780, 901
EaeI	YGGCCR	3 cut(s)	3, 288, 774
Eam1104I	CTCTTC	2 cut(s)	321, 426
EarI	CTCTTC	2 cut(s)	321, 426
Ecl136II	GAGCTC	1 cut(s)	436
Eco130I	CCWWGG	1 cut(s)	670
Eco24I	GRGCYC	1 cut(s)	438
Eco31I	GGTCTC	1 cut(s)	695
Eco53kI	GAGCTC	1 cut(s)	436
Eco88I	CYCGRG	1 cut(s)	700
EcoICRI	GAGCTC	1 cut(s)	436
EcoT14I	CCWWGG	1 cut(s)	670
EcoT22I	ATGCAT	1 cut(s)	652
EcoT38I	GRGCYC	1 cut(s)	438
ErhI	CCWWGG	1 cut(s)	670
FaeI	CATG	5 cut(s)	76, 214, 389, 461, 981
FaqI	GGGAC	1 cut(s)	274
FatI	CATG	5 cut(s)	72, 210, 385, 457, 977
FauI	CCCGC	1 cut(s)	1057
FauNDI	CATATG	3 cut(s)	812, 850, 937
Fnu4HI	GCNGC	1 cut(s)	676
FokI	GGATG	2 cut(s)	93, 782
FriOI	GRGCYC	1 cut(s)	438
Fsp4HI	GCNGC	1 cut(s)	676
FspBI	CTAG	4 cut(s)	413, 470, 671, 1029
FspI	TGCGCA	1 cut(s)	390
GlaI	GCGC	1 cut(s)	390
GluI	GCNGC	1 cut(s)	676
HaeIII	GGCC	3 cut(s)	5, 290, 776
HapII	CCGG	2 cut(s)	687, 968
HgaI	GACGC	1 cut(s)	320
HhaI	GCGC	1 cut(s)	391
Hin1II	CATG	5 cut(s)	76, 214, 389, 461, 981
Hin6I	GCGC	1 cut(s)	389
HinP1I	GCGC	1 cut(s)	389
HindIII	AAGCTT	1 cut(s)	788
HinfI	GANTC	2 cut(s)	262, 711
HpaII	CCGG	2 cut(s)	687, 968
HphI	GGTGA	1 cut(s)	720
Hpy166II	GTNNAC	1 cut(s)	1026
Hpy188I	TCNGA	6 cut(s)	45, 92, 204, 267, 332, 746
Hpy188III	TCNNGA	4 cut(s)	644, 784, 968, 993
Hpy8I	GTNNAC	1 cut(s)	1026
HpyAV	CCTTC	4 cut(s)	420, 578, 794, 1036
HpyCH4III	ACNGT	3 cut(s)	58, 464, 640
HpyCH4V	TGCA	6 cut(s)	30, 194, 650, 981, 1007, 1026
HpyF10VI	GCNNNNNNNGC	5 cut(s)	160, 442, 590, 599, 875
HpyF3I	CTNAG	4 cut(s)	89, 169, 264, 493
Hsp92II	CATG	5 cut(s)	76, 214, 389, 461, 981
HspAI	GCGC	1 cut(s)	389
Kpn2I	TCCGGA	1 cut(s)	967
Kzo9I	GATC	4 cut(s)	144, 207, 780, 901
LguI	GCTCTTC	2 cut(s)	321, 426
LmnI	GCTCC	5 cut(s)	159, 217, 441, 570, 970
LpnPI	CCDG	8 cut(s)	279, 356, 411, 529, 700, 752, 978, 981
Lsp1109I	GCAGC	1 cut(s)	662
LweI	GCATC	2 cut(s)	71, 637
MaeI	CTAG	4 cut(s)	413, 470, 671, 1029
MaeIII	GTNAC	3 cut(s)	52, 233, 755
MalI	GATC	4 cut(s)	146, 209, 782, 903
MboI	GATC	4 cut(s)	144, 207, 780, 901
MboII	GAAGA	5 cut(s)	308, 443, 445, 523, 904
MflI	RGATCY	1 cut(s)	901
MhlI	GDGCHC	4 cut(s)	438, 604, 707, 1028
MlsI	TGGCCA	3 cut(s)	5, 290, 776
MluCI	AATT	5 cut(s)	37, 242, 357, 549, 881
MluNI	TGGCCA	3 cut(s)	5, 290, 776
MlyI	GAGTC	2 cut(s)	256, 705
MmeI	TCCRAC	1 cut(s)	58
MnlI	CCTC	7 cut(s)	131, 167, 198, 498, 512, 582, 590
Mox20I	TGGCCA	3 cut(s)	5, 290, 776
Mph1103I	ATGCAT	1 cut(s)	652
MroI	TCCGGA	1 cut(s)	967
MscI	TGGCCA	3 cut(s)	5, 290, 776
MseI	TTAA	4 cut(s)	857, 884, 953, 1096
Msp20I	TGGCCA	3 cut(s)	5, 290, 776
MspI	CCGG	2 cut(s)	687, 968
MvnI	CGCG	1 cut(s)	128
MwoI	GCNNNNNNNGC	5 cut(s)	160, 442, 590, 599, 875
NdeI	CATATG	3 cut(s)	812, 850, 937
NdeII	GATC	4 cut(s)	144, 207, 780, 901
NlaIII	CATG	5 cut(s)	76, 214, 389, 461, 981
NlaIV	GGNNCC	7 cut(s)	155, 219, 518, 832, 846, 903, 966
NmuCI	GTSAC	1 cut(s)	52
NsbI	TGCGCA	1 cut(s)	390
NsiI	ATGCAT	1 cut(s)	652
NspI	RCATGY	2 cut(s)	389, 981
PaeI	GCATGC	1 cut(s)	389
PaeR7I	CTCGAG	1 cut(s)	700
PciSI	GCTCTTC	2 cut(s)	321, 426
PinAI	ACCGGT	1 cut(s)	686
PkrI	GCNGC	1 cut(s)	677
PleI	GAGTC	2 cut(s)	256, 705
PpsI	GAGTC	2 cut(s)	256, 705
PsiI	TTATAA	1 cut(s)	279
Psp124BI	GAGCTC	1 cut(s)	438
PspN4I	GGNNCC	7 cut(s)	155, 219, 518, 832, 846, 903, 966
PspXI	VCTCGAGB	1 cut(s)	700
PsuI	RGATCY	1 cut(s)	901
SacI	GAGCTC	1 cut(s)	438
SapI	GCTCTTC	2 cut(s)	321, 426
SaqAI	TTAA	4 cut(s)	857, 884, 953, 1096
SatI	GCNGC	1 cut(s)	676
Sau3AI	GATC	4 cut(s)	144, 207, 780, 901
SchI	GAGTC	2 cut(s)	256, 705
SduI	GDGCHC	4 cut(s)	438, 604, 707, 1028
SfaNI	GCATC	2 cut(s)	71, 637
Sfr274I	CTCGAG	1 cut(s)	700
SlaI	CTCGAG	1 cut(s)	700
SmlI	CTYRAG	1 cut(s)	700
SmoI	CTYRAG	1 cut(s)	700
SphI	GCATGC	1 cut(s)	389
Sse9I	AATT	5 cut(s)	37, 242, 357, 549, 881
SsiI	CCGC	2 cut(s)	178, 1064
SspMI	CTAG	4 cut(s)	413, 470, 671, 1029
SstI	GAGCTC	1 cut(s)	438
StyI	CCWWGG	1 cut(s)	670
TaaI	ACNGT	3 cut(s)	58, 464, 640
TaqI	TCGA	2 cut(s)	701, 709
TasI	AATT	5 cut(s)	37, 242, 357, 549, 881
Tru1I	TTAA	4 cut(s)	857, 884, 953, 1096
Tru9I	TTAA	4 cut(s)	857, 884, 953, 1096
TscAI	CASTG	3 cut(s)	196, 298, 379
TseFI	GTSAC	1 cut(s)	52
TseI	GCWGC	1 cut(s)	675
Tsp45I	GTSAC	1 cut(s)	52
TspDTI	ATGAA	7 cut(s)	290, 308, 523, 602, 646, 935, 954
TspGWI	ACGGA	1 cut(s)	894
TspRI	CASTG	3 cut(s)	196, 298, 379
VneI	GTGCAC	1 cut(s)	1024
XapI	RAATTY	1 cut(s)	242
XceI	RCATGY	2 cut(s)	389, 981
XcmI	CCANNNNNNNNNTGG	1 cut(s)	350
XhoI	CTCGAG	1 cut(s)	700
XmaJI	CCTAGG	1 cut(s)	670
XspI	CTAG	4 cut(s)	413, 470, 671, 1029
Zsp2I	ATGCAT	1 cut(s)	652

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.