Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0001249

Physical Location & Seq

Genomic Coordinates Reverse (-)

4874298 .. 4875086

Gene Structure 789 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00081930.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

ATGGCTTTGCTTACCATTCTTTGGATTCCGGTCGGTTTCGTTTTGGCTTGCTTACGTATTGCTGCCGGTTCATTGCTTCCTATGCCGGTCGTGTACTATGCCTTTTGGGCTTTGGGTGTTAGGGTTTATATCAAGGGCACCCCACCACCTCCAGCTAAGAAGTCAACGGGTCAAACCGGAGTTCTCTTCATTTGCTCACACCGAACCCTACTCGATCCCATTTTCCTCTCCACCGCTCTCGGGCGTCCGATCCCGGCAGTCACATACTCTCTCTCGCGACTCTCGGAGATAATCTCGCCCATCAAAACCGTCCGGCTAACCCGAGACCGGGTTGCCGACGCCAACATGATCAAGAAGCTTCTAGAACAAGGTGACCTAGTCATATGCCCCGAGGGCACAACATGCCGAGAACCCTTTCTGCTGCGGTTCTCCGCGTTGTTTGCCGAGCTCACGGACGAGCTGGTCCCCGTGGCAATGGCAAATCGGATGAGCATGTTCCACGGAACCACCGCGAGGGGGTGGAAGGGAATGGACCCGTTTTACTTCTTCATGAACCCTAGCCCTGCTTATGAAGTAACGTTTTTGAACAAGTTGCCTAGCGAGTTAACTTGCGGAGCAGGCAAGTCGAGCCATGATGTGGCGAACTATATACAAAGGACTATCGCGGCCAGCTTGTCGTACGAGTGCACAACGTTCACGAGGAAAGACAAGTACAGAGCTCTGGCCGGGAATGATGGCACGGTGGCGGAGAAACCAGATGCTAATGCCAAAAAAATTATGGGGTGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0006793 GO:0006796 GO:0007275 GO:0008150 GO:0008152 GO:0008374 GO:0009058 GO:0009059 GO:0009791 GO:0009908 GO:0009987 GO:0010143 GO:0016020 GO:0016311 GO:0016740 GO:0016746 GO:0016747 GO:0016787 GO:0016788 GO:0016791 GO:0022414 GO:0032501 GO:0032502 GO:0042578 GO:0043170 GO:0044237 GO:0048367 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090447 GO:0090567 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00561 ko00564 ko01100 ko01110 map00561 map00564 map01100 map01110

Pfam Domains

Protein Families

Acyltransferase HAD

Protein Analysis

262

Amino Acids

28.78

Weight (kDa)

9.25

Isoelectric Point (pI)

38.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Acyltransferase	PF01553	58 - 157	5.8e-07	Acyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001249)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g08570 FvH4_4g03930 FvH4_4g35510 FvH4_6g49610
malus_domestica	MD09G1043100.v1.1 MD12G1162100.v1.1 MD13G1082600.v1.1 MD16G1081700.v1.1 MD17G1044600.v1.1
prunus_persica	Prupe.1G264300_v2.0.a1 Prupe.3G274600_v2.0.a1
pyrus_communis	pycom111g03370 pycom16g07050
rosa_chinensis	RchiOBHm_Chr2g0169641 RchiOBHm_Chr4g0393951 RchiOBHm_Chr4g0445161 RchiOBHm_Chr6g0263921
rosa_laevigata	RLG00000005762 RLG00000009723 RLG00000014303 RLG00000021890
rosa_multiflora	Rmu_co8152054.1_g000001 Rmu_co8379785.1_g000001 Rmu_sc0000050.1_g000041 Rmu_sc0000363.1_g000001 Rmu_sc0002112.1_g000017 Rmu_sc0002720.1_g000011 Rmu_sc0013280.1_g000008
rosa_roxburghii	Rroxscaffold_176G00431300 Rroxscaffold_2G00081930 Rroxscaffold_7G00203770
rosa_rugosa	Rorug02G0541700 Rorug03G0369800.1 Rorug04G0359500 Rorug06G0006900
rosa_samantha	Rh2AG614100 Rh2BG626300 Rh2CG595600 Rh2DG637200 Rh4AG050000 Rh4AG420300 Rh4BG046400 Rh4BG432100 Rh4CG053400 Rh4CG446700 Rh4DG047000 Rh4DG428200 Rh6AG127000 Rh6BG123200 Rh6CG121700 Rh6DG109100
rosa_wichuraiana	Rw2G050890 Rw4G003950 Rw4G018340 Rw4G036040 Rw6G011030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	461
AccB1I	GGYRCC	1 cut(s)	137
AccB7I	CCANNNNNTGG	2 cut(s)	21, 637
AccBSI	CCGCTC	1 cut(s)	236
AccII	CGCG	4 cut(s)	277, 434, 512, 665
AciI	CCGC	7 cut(s)	234, 424, 432, 510, 612, 665, 746
AclI	AACGTT	2 cut(s)	578, 692
AclWI	GGATC	2 cut(s)	209, 244
AcoI	YGGCCR	2 cut(s)	666, 723
AcyI	GRCGYC	2 cut(s)	244, 339
AfaI	GTAC	3 cut(s)	95, 680, 713
AfiI	CCNNNNNNNGG	7 cut(s)	21, 240, 327, 328, 513, 516, 637
AgsI	TTSAA	1 cut(s)	586
AluBI	AGCT	6 cut(s)	155, 358, 448, 460, 672, 719
AluI	AGCT	6 cut(s)	155, 358, 448, 460, 672, 719
Alw21I	GWGCWC	3 cut(s)	450, 689, 721
Alw26I	GTCTC	1 cut(s)	318
Alw44I	GTGCAC	1 cut(s)	685
AlwI	GGATC	2 cut(s)	209, 244
Ama87I	CYCGRG	3 cut(s)	239, 321, 389
AoxI	GGCC	2 cut(s)	666, 723
ApaLI	GTGCAC	1 cut(s)	685
ApeKI	GCWGC	2 cut(s)	62, 421
Asp700I	GAANNNNTTC	1 cut(s)	414
AspS9I	GGNCC	2 cut(s)	463, 532
AsuC2I	CCSGG	3 cut(s)	254, 329, 727
AsuHPI	GGTGA	1 cut(s)	383
AvaI	CYCGRG	3 cut(s)	239, 321, 389
AvaII	GGWCC	2 cut(s)	463, 532
BaeGI	GKGCMC	3 cut(s)	140, 398, 689
BanI	GGYRCC	1 cut(s)	137
BanII	GRGCYC	2 cut(s)	450, 721
BauI	CACGAG	1 cut(s)	697
Bbv12I	GWGCWC	3 cut(s)	450, 689, 721
BbvI	GCAGC	2 cut(s)	49, 408
BccI	CCATC	2 cut(s)	308, 728
BcgI	CGANNNNNNTGC	2 cut(s)	606, 640
BclI	TGATCA	1 cut(s)	348
BcnI	CCSGG	3 cut(s)	254, 329, 727
BcoDI	GTCTC	1 cut(s)	318
BfaI	CTAG	5 cut(s)	362, 377, 558, 597, 787
BglI	GCCNNNNNGGC	2 cut(s)	107, 393
BisI	GCNGC	3 cut(s)	63, 422, 666
BlsI	GCNGC	3 cut(s)	64, 423, 667
Bme1390I	CCNGG	3 cut(s)	254, 329, 727
Bme18I	GGWCC	2 cut(s)	463, 532
BmeT110I	CYCGRG	3 cut(s)	239, 321, 389
BmgT120I	GGNCC	2 cut(s)	463, 532
BmiI	GGNNCC	4 cut(s)	139, 465, 505, 534
BmrFI	CCNGG	3 cut(s)	254, 329, 727
BmsI	GCATC	1 cut(s)	748
BplI	GAGNNNNNCTC	2 cut(s)	278, 310
BpmI	CTGGAG	1 cut(s)	135
BpuMI	CCSGG	3 cut(s)	254, 329, 727
BsaAI	YACGTR	1 cut(s)	56
BsaHI	GRCGYC	2 cut(s)	244, 339
BsaI	GGTCTC	1 cut(s)	318
BsaJI	CCNNGG	3 cut(s)	390, 468, 499
BsaWI	WCCGGW	2 cut(s)	28, 176
Bsc4I	CCNNNNNNNGG	7 cut(s)	21, 240, 327, 328, 513, 516, 637
Bse118I	RCCGGY	2 cut(s)	65, 85
Bse3DI	GCAATG	2 cut(s)	71, 480
BseDI	CCNNGG	3 cut(s)	390, 468, 499
BseGI	GGATG	1 cut(s)	492
BseLI	CCNNNNNNNGG	7 cut(s)	21, 240, 327, 328, 513, 516, 637
BseMI	GCAATG	2 cut(s)	71, 480
BseSI	GKGCMC	3 cut(s)	140, 398, 689
BseXI	GCAGC	2 cut(s)	49, 408
Bsh1236I	CGCG	4 cut(s)	277, 434, 512, 665
Bsh1285I	CGRYCG	2 cut(s)	33, 90
BshFI	GGCC	2 cut(s)	668, 725
BshNI	GGYRCC	1 cut(s)	137
BsiEI	CGRYCG	2 cut(s)	33, 90
BsiHKAI	GWGCWC	3 cut(s)	450, 689, 721
BsiHKCI	CYCGRG	3 cut(s)	239, 321, 389
BsiSI	CCGG	8 cut(s)	29, 66, 86, 177, 254, 313, 328, 726
BsiWI	CGTACG	1 cut(s)	678
BslFI	GGGAC	1 cut(s)	449
BslI	CCNNNNNNNGG	7 cut(s)	21, 240, 327, 328, 513, 516, 637
BsmAI	GTCTC	1 cut(s)	318
BsmFI	GGGAC	1 cut(s)	449
BsnI	GGCC	2 cut(s)	668, 725
Bso31I	GGTCTC	1 cut(s)	318
BsoBI	CYCGRG	3 cut(s)	239, 321, 389
Bsp1286I	GDGCHC	5 cut(s)	140, 398, 450, 689, 721
Bsp143I	GATC	3 cut(s)	214, 249, 348
Bsp68I	TCGCGA	1 cut(s)	277
BspACI	CCGC	7 cut(s)	234, 424, 432, 510, 612, 665, 746
BspANI	GGCC	2 cut(s)	668, 725
BspFNI	CGCG	4 cut(s)	277, 434, 512, 665
BspHI	TCATGA	1 cut(s)	549
BspLI	GGNNCC	4 cut(s)	139, 465, 505, 534
BspPI	GGATC	2 cut(s)	209, 244
BspT107I	GGYRCC	1 cut(s)	137
BspTNI	GGTCTC	1 cut(s)	318
BsrBI	CCGCTC	1 cut(s)	236
BsrDI	GCAATG	2 cut(s)	71, 480
BsrFI	RCCGGY	2 cut(s)	65, 85
BssAI	RCCGGY	2 cut(s)	65, 85
BssECI	CCNNGG	3 cut(s)	390, 468, 499
BssMI	GATC	3 cut(s)	214, 249, 348
BssNI	GRCGYC	2 cut(s)	244, 339
BssSI	CACGAG	1 cut(s)	697
Bst2BI	CACGAG	1 cut(s)	697
Bst4CI	ACNGT	2 cut(s)	310, 742
Bst6I	CTCTTC	1 cut(s)	191
BstACI	GRCGYC	2 cut(s)	244, 339
BstAPI	GCANNNNNTGC	1 cut(s)	402
BstBAI	YACGTR	1 cut(s)	56
BstC8I	GCNNGC	3 cut(s)	49, 619, 670
BstDEI	CTNAG	1 cut(s)	156
BstDSI	CCRYGG	2 cut(s)	468, 499
BstEII	GGTNACC	1 cut(s)	371
BstF5I	GGATG	1 cut(s)	492
BstFNI	CGCG	4 cut(s)	277, 434, 512, 665
BstKTI	GATC	3 cut(s)	217, 252, 351
BstMAI	GTCTC	1 cut(s)	318
BstMBI	GATC	3 cut(s)	214, 249, 348
BstMCI	CGRYCG	2 cut(s)	33, 90
BstMWI	GCNNNNNNNGC	7 cut(s)	82, 107, 393, 402, 440, 618, 627
BstNSI	RCATGY	2 cut(s)	405, 496
BstPI	GGTNACC	1 cut(s)	371
BstSCI	CCNGG	3 cut(s)	252, 327, 725
BstSLI	GKGCMC	3 cut(s)	140, 398, 689
BstSNI	TACGTA	1 cut(s)	56
BstUI	CGCG	4 cut(s)	277, 434, 512, 665
BstV1I	GCAGC	2 cut(s)	49, 408
BsuRI	GGCC	2 cut(s)	668, 725
BtgI	CCRYGG	2 cut(s)	468, 499
BtsCI	GGATG	1 cut(s)	492
BtuMI	TCGCGA	1 cut(s)	277
Cac8I	GCNNGC	3 cut(s)	49, 619, 670
CciI	TCATGA	1 cut(s)	549
Cfr10I	RCCGGY	2 cut(s)	65, 85
Cfr13I	GGNCC	2 cut(s)	463, 532
CseI	GACGC	2 cut(s)	233, 347
Csp6I	GTAC	3 cut(s)	94, 679, 712
CviAII	CATG	5 cut(s)	346, 402, 493, 550, 632
CviQI	GTAC	3 cut(s)	94, 679, 712
DdeI	CTNAG	1 cut(s)	156
DpnI	GATC	3 cut(s)	216, 251, 350
DpnII	GATC	3 cut(s)	214, 249, 348
DrdI	GACNNNNNNGTC	1 cut(s)	461
DseDI	GACNNNNNNGTC	1 cut(s)	461
EaeI	YGGCCR	2 cut(s)	666, 723
Eam1104I	CTCTTC	1 cut(s)	191
EarI	CTCTTC	1 cut(s)	191
EciI	GGCGGA	1 cut(s)	761
Ecl136II	GAGCTC	2 cut(s)	448, 719
Eco105I	TACGTA	1 cut(s)	56
Eco24I	GRGCYC	2 cut(s)	450, 721
Eco31I	GGTCTC	1 cut(s)	318
Eco47I	GGWCC	2 cut(s)	463, 532
Eco53kI	GAGCTC	2 cut(s)	448, 719
Eco88I	CYCGRG	3 cut(s)	239, 321, 389
Eco91I	GGTNACC	1 cut(s)	371
EcoICRI	GAGCTC	2 cut(s)	448, 719
EcoO65I	GGTNACC	1 cut(s)	371
EcoT38I	GRGCYC	2 cut(s)	450, 721
FaeI	CATG	5 cut(s)	349, 405, 496, 553, 635
FaqI	GGGAC	1 cut(s)	449
FatI	CATG	5 cut(s)	345, 401, 492, 549, 631
FauNDI	CATATG	1 cut(s)	383
FbaI	TGATCA	1 cut(s)	348
Fnu4HI	GCNGC	3 cut(s)	63, 422, 666
FokI	GGATG	1 cut(s)	499
FriOI	GRGCYC	2 cut(s)	450, 721
Fsp4HI	GCNGC	3 cut(s)	63, 422, 666
FspBI	CTAG	5 cut(s)	362, 377, 558, 597, 787
GluI	GCNGC	3 cut(s)	63, 422, 666
GsuI	CTGGAG	1 cut(s)	135
HaeIII	GGCC	2 cut(s)	668, 725
HapII	CCGG	8 cut(s)	29, 66, 86, 177, 254, 313, 328, 726
HgaI	GACGC	2 cut(s)	233, 347
Hin1I	GRCGYC	2 cut(s)	244, 339
Hin1II	CATG	5 cut(s)	349, 405, 496, 553, 635
HincII	GTYRAC	2 cut(s)	165, 606
HindII	GTYRAC	2 cut(s)	165, 606
HindIII	AAGCTT	1 cut(s)	356
HinfI	GANTC	2 cut(s)	25, 279
HpaI	GTTAAC	1 cut(s)	606
HpaII	CCGG	8 cut(s)	29, 66, 86, 177, 254, 313, 328, 726
HphI	GGTGA	1 cut(s)	383
Hpy166II	GTNNAC	5 cut(s)	94, 165, 606, 687, 696
Hpy188I	TCNGA	3 cut(s)	249, 286, 486
Hpy188III	TCNNGA	5 cut(s)	276, 352, 362, 550, 697
Hpy8I	GTNNAC	5 cut(s)	94, 165, 606, 687, 696
Hpy99I	CGWCG	1 cut(s)	341
HpyAV	CCTTC	1 cut(s)	517
HpyCH4III	ACNGT	2 cut(s)	310, 742
HpyCH4IV	ACGT	3 cut(s)	55, 578, 692
HpyCH4V	TGCA	1 cut(s)	687
HpyF10VI	GCNNNNNNNGC	7 cut(s)	82, 107, 393, 402, 440, 618, 627
HpyF3I	CTNAG	1 cut(s)	156
HpySE526I	ACGT	3 cut(s)	55, 578, 692
Hsp92I	GRCGYC	2 cut(s)	244, 339
Hsp92II	CATG	5 cut(s)	349, 405, 496, 553, 635
Ksp22I	TGATCA	1 cut(s)	348
KspAI	GTTAAC	1 cut(s)	606
Kzo9I	GATC	3 cut(s)	214, 249, 348
LmnI	GCTCC	1 cut(s)	614
Lsp1109I	GCAGC	2 cut(s)	49, 408
LweI	GCATC	1 cut(s)	748
MaeI	CTAG	5 cut(s)	362, 377, 558, 597, 787
MaeII	ACGT	3 cut(s)	55, 578, 692
MaeIII	GTNAC	3 cut(s)	259, 371, 574
MalI	GATC	3 cut(s)	216, 251, 350
MbiI	CCGCTC	1 cut(s)	236
MboI	GATC	3 cut(s)	214, 249, 348
MboII	GAAGA	2 cut(s)	178, 538
MhlI	GDGCHC	5 cut(s)	140, 398, 450, 689, 721
MluCI	AATT	1 cut(s)	774
MlyI	GAGTC	1 cut(s)	273
MnlI	CCTC	5 cut(s)	159, 236, 385, 507, 693
MroXI	GAANNNNTTC	1 cut(s)	414
MseI	TTAA	1 cut(s)	605
MspI	CCGG	8 cut(s)	29, 66, 86, 177, 254, 313, 328, 726
MspR9I	CCNGG	3 cut(s)	254, 329, 727
MvnI	CGCG	4 cut(s)	277, 434, 512, 665
MwoI	GCNNNNNNNGC	7 cut(s)	82, 107, 393, 402, 440, 618, 627
NciI	CCSGG	3 cut(s)	254, 329, 727
NdeI	CATATG	1 cut(s)	383
NdeII	GATC	3 cut(s)	214, 249, 348
NlaIII	CATG	5 cut(s)	349, 405, 496, 553, 635
NlaIV	GGNNCC	4 cut(s)	139, 465, 505, 534
NmeAIII	GCCGAG	2 cut(s)	431, 469
NmuCI	GTSAC	2 cut(s)	259, 371
NruI	TCGCGA	1 cut(s)	277
NspI	RCATGY	2 cut(s)	405, 496
PagI	TCATGA	1 cut(s)	549
PdmI	GAANNNNTTC	1 cut(s)	414
PfeI	GAWTC	1 cut(s)	25
Pfl23II	CGTACG	1 cut(s)	678
PflFI	GACNNNGTC	1 cut(s)	377
PflMI	CCANNNNNTGG	2 cut(s)	21, 637
PkrI	GCNGC	3 cut(s)	64, 423, 667
PleI	GAGTC	1 cut(s)	273
PpsI	GAGTC	1 cut(s)	273
Ppu21I	YACGTR	1 cut(s)	56
Psp124BI	GAGCTC	2 cut(s)	450, 721
Psp1406I	AACGTT	2 cut(s)	578, 692
PspEI	GGTNACC	1 cut(s)	371
PspLI	CGTACG	1 cut(s)	678
PspN4I	GGNNCC	4 cut(s)	139, 465, 505, 534
PspPI	GGNCC	2 cut(s)	463, 532
PsyI	GACNNNGTC	1 cut(s)	377
RruI	TCGCGA	1 cut(s)	277
RsaI	GTAC	3 cut(s)	95, 680, 713
RsaNI	GTAC	3 cut(s)	94, 679, 712
SacI	GAGCTC	2 cut(s)	450, 721
SaqAI	TTAA	1 cut(s)	605
SatI	GCNGC	3 cut(s)	63, 422, 666
Sau3AI	GATC	3 cut(s)	214, 249, 348
Sau96I	GGNCC	2 cut(s)	463, 532
SchI	GAGTC	1 cut(s)	273
ScrFI	CCNGG	3 cut(s)	254, 329, 727
SduI	GDGCHC	5 cut(s)	140, 398, 450, 689, 721
SfaNI	GCATC	1 cut(s)	748
SinI	GGWCC	2 cut(s)	463, 532
SnaBI	TACGTA	1 cut(s)	56
Sse9I	AATT	1 cut(s)	774
SsiI	CCGC	7 cut(s)	234, 424, 432, 510, 612, 665, 746
SspMI	CTAG	5 cut(s)	362, 377, 558, 597, 787
SstI	GAGCTC	2 cut(s)	450, 721
StyD4I	CCNGG	3 cut(s)	252, 327, 725
TaaI	ACNGT	2 cut(s)	310, 742
TaiI	ACGT	3 cut(s)	58, 581, 695
TaqI	TCGA	2 cut(s)	213, 626
TasI	AATT	1 cut(s)	774
TatI	WGTACW	2 cut(s)	93, 711
TauI	GCSGC	1 cut(s)	668
TfiI	GAWTC	1 cut(s)	25
Tru1I	TTAA	1 cut(s)	605
Tru9I	TTAA	1 cut(s)	605
TseFI	GTSAC	2 cut(s)	259, 371
TseI	GCWGC	2 cut(s)	62, 421
Tsp45I	GTSAC	2 cut(s)	259, 371
TspDTI	ATGAA	5 cut(s)	60, 178, 538, 566, 585
TspGWI	ACGGA	2 cut(s)	467, 516
Tth111I	GACNNNGTC	1 cut(s)	377
Van91I	CCANNNNNTGG	2 cut(s)	21, 637
VneI	GTGCAC	1 cut(s)	685
VpaK11BI	GGWCC	2 cut(s)	463, 532
XbaI	TCTAGA	1 cut(s)	361
XceI	RCATGY	2 cut(s)	405, 496
XcmI	CCANNNNNNNNNTGG	1 cut(s)	775
XmnI	GAANNNNTTC	1 cut(s)	414
XspI	CTAG	5 cut(s)	362, 377, 558, 597, 787

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.