Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8152054.1

Orthogroup ID

OG0001249

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 416

Gene Structure 416 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8152054.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

agggaaccaaatgttttaaggttttcggcactgtttgctgaattaagtgaccaacttgtccttgtagccatcgttagccaccagagcatgtttcatggaaccacagttcgagggtggaaagcaatggacccttttttcttctcgatgaacctgtttccatcatatgaagtcacattcttgaataagttggctccagaacaaatatgcaatgctacttctggaaagactagctttgaggtagcaaattacgtacaaaggattataggtgcaactgtttcttccgagtgcactaaccttacaaggaaggacaagtattgggttcttgcggggaatgattggaatgtggtttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0006793 GO:0006796 GO:0007275 GO:0008150 GO:0008152 GO:0008374 GO:0009058 GO:0009059 GO:0009791 GO:0009908 GO:0009987 GO:0010143 GO:0016020 GO:0016311 GO:0016740 GO:0016746 GO:0016747 GO:0016787 GO:0016788 GO:0016791 GO:0022414 GO:0032501 GO:0032502 GO:0042578 GO:0043170 GO:0044237 GO:0048367 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090447 GO:0090567 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00561 ko00564 ko01100 ko01110 map00561 map00564 map01100 map01110

Pfam Domains

Protein Families

Acyltransferase HAD

Protein Analysis

116

Amino Acids

13.11

Weight (kDa)

6.92

Isoelectric Point (pI)

30.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001249)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g08570 FvH4_4g03930 FvH4_4g35510 FvH4_6g49610
malus_domestica	MD09G1043100.v1.1 MD12G1162100.v1.1 MD13G1082600.v1.1 MD16G1081700.v1.1 MD17G1044600.v1.1
prunus_persica	Prupe.1G264300_v2.0.a1 Prupe.3G274600_v2.0.a1
pyrus_communis	pycom111g03370 pycom16g07050
rosa_chinensis	RchiOBHm_Chr2g0169641 RchiOBHm_Chr4g0393951 RchiOBHm_Chr4g0445161 RchiOBHm_Chr6g0263921
rosa_laevigata	RLG00000005762 RLG00000009723 RLG00000014303 RLG00000021890
rosa_multiflora	Rmu_co8152054.1_g000001 Rmu_co8379785.1_g000001 Rmu_sc0000050.1_g000041 Rmu_sc0000363.1_g000001 Rmu_sc0002112.1_g000017 Rmu_sc0002720.1_g000011 Rmu_sc0013280.1_g000008
rosa_roxburghii	Rroxscaffold_176G00431300 Rroxscaffold_2G00081930 Rroxscaffold_7G00203770
rosa_rugosa	Rorug02G0541700 Rorug03G0369800.1 Rorug04G0359500 Rorug06G0006900
rosa_samantha	Rh2AG614100 Rh2BG626300 Rh2CG595600 Rh2DG637200 Rh4AG050000 Rh4AG420300 Rh4BG046400 Rh4BG432100 Rh4CG053400 Rh4CG446700 Rh4DG047000 Rh4DG428200 Rh6AG127000 Rh6BG123200 Rh6CG121700 Rh6DG109100
rosa_wichuraiana	Rw2G050890 Rw4G003950 Rw4G018340 Rw4G036040 Rw6G011030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	56
AciI	CCGC	1 cut(s)	326
AfaI	GTAC	1 cut(s)	252
AgsI	TTSAA	1 cut(s)	181
AloI	GAACNNNNNNTCC	2 cut(s)	90, 122
AluBI	AGCT	1 cut(s)	231
AluI	AGCT	1 cut(s)	231
Alw21I	GWGCWC	1 cut(s)	290
Alw44I	GTGCAC	1 cut(s)	286
ApaLI	GTGCAC	1 cut(s)	286
AspS9I	GGNCC	1 cut(s)	127
AvaII	GGWCC	1 cut(s)	127
BaeGI	GKGCMC	1 cut(s)	290
Bbv12I	GWGCWC	1 cut(s)	290
BccI	CCATC	2 cut(s)	77, 166
BfaI	CTAG	1 cut(s)	228
Bme18I	GGWCC	1 cut(s)	127
BmgT120I	GGNCC	1 cut(s)	127
BmiI	GGNNCC	4 cut(s)	6, 100, 129, 192
BpmI	CTGGAG	1 cut(s)	177
BsaAI	YACGTR	1 cut(s)	250
Bse3DI	GCAATG	2 cut(s)	129, 214
BseMI	GCAATG	2 cut(s)	129, 214
BseSI	GKGCMC	1 cut(s)	290
BsiHKAI	GWGCWC	1 cut(s)	290
Bsp1286I	GDGCHC	1 cut(s)	290
BspACI	CCGC	1 cut(s)	326
BspLI	GGNNCC	4 cut(s)	6, 100, 129, 192
BsrDI	GCAATG	2 cut(s)	129, 214
Bst4CI	ACNGT	3 cut(s)	33, 106, 274
BstAPI	GCANNNNNTGC	1 cut(s)	35
BstBAI	YACGTR	1 cut(s)	250
BstMWI	GCNNNNNNNGC	2 cut(s)	35, 84
BstNSI	RCATGY	1 cut(s)	91
BstSLI	GKGCMC	1 cut(s)	290
BstSNI	TACGTA	1 cut(s)	250
BtsIMutI	CAGTG	1 cut(s)	29
Cfr13I	GGNCC	1 cut(s)	127
Csp6I	GTAC	1 cut(s)	251
CviAII	CATG	2 cut(s)	88, 95
CviJI	RGCY	4 cut(s)	68, 78, 191, 231
CviKI_1	RGCY	4 cut(s)	68, 78, 191, 231
CviQI	GTAC	1 cut(s)	251
DrdI	GACNNNNNNGTC	1 cut(s)	56
DseDI	GACNNNNNNGTC	1 cut(s)	56
Eco105I	TACGTA	1 cut(s)	250
Eco47I	GGWCC	1 cut(s)	127
FaeI	CATG	2 cut(s)	91, 98
FaiI	YATR	6 cut(s)	89, 96, 163, 165, 205, 263
FalI	AAGNNNNNCTT	2 cut(s)	215, 247
FatI	CATG	2 cut(s)	87, 94
FauI	CCCGC	1 cut(s)	319
FauNDI	CATATG	1 cut(s)	163
FspBI	CTAG	1 cut(s)	228
GsuI	CTGGAG	1 cut(s)	177
Hin1II	CATG	2 cut(s)	91, 98
Hpy166II	GTNNAC	1 cut(s)	288
Hpy188I	TCNGA	1 cut(s)	283
Hpy188III	TCNNGA	4 cut(s)	142, 178, 194, 219
Hpy8I	GTNNAC	1 cut(s)	288
HpyAV	CCTTC	1 cut(s)	298
HpyCH4III	ACNGT	3 cut(s)	33, 106, 274
HpyCH4IV	ACGT	1 cut(s)	249
HpyCH4V	TGCA	3 cut(s)	207, 269, 288
HpyF10VI	GCNNNNNNNGC	2 cut(s)	35, 84
HpySE526I	ACGT	1 cut(s)	249
Hsp92II	CATG	2 cut(s)	91, 98
LmnI	GCTCC	1 cut(s)	196
LpnPI	CCDG	4 cut(s)	95, 164, 204, 207
MaeI	CTAG	1 cut(s)	228
MaeII	ACGT	1 cut(s)	249
MaeIII	GTNAC	2 cut(s)	47, 169
MboII	GAAGA	2 cut(s)	130, 270
MhlI	GDGCHC	1 cut(s)	290
MluCI	AATT	2 cut(s)	41, 244
MnlI	CCTC	2 cut(s)	104, 229
MseI	TTAA	2 cut(s)	17, 44
MwoI	GCNNNNNNNGC	2 cut(s)	35, 84
NdeI	CATATG	1 cut(s)	163
NlaIII	CATG	2 cut(s)	91, 98
NlaIV	GGNNCC	4 cut(s)	6, 100, 129, 192
NmuCI	GTSAC	2 cut(s)	47, 169
NspI	RCATGY	1 cut(s)	91
Ppu21I	YACGTR	1 cut(s)	250
PspN4I	GGNNCC	4 cut(s)	6, 100, 129, 192
PspPI	GGNCC	1 cut(s)	127
RsaI	GTAC	1 cut(s)	252
RsaNI	GTAC	1 cut(s)	251
SaqAI	TTAA	2 cut(s)	17, 44
Sau96I	GGNCC	1 cut(s)	127
SduI	GDGCHC	1 cut(s)	290
SetI	ASST	7 cut(s)	23, 153, 233, 240, 252, 268, 297
SinI	GGWCC	1 cut(s)	127
SnaBI	TACGTA	1 cut(s)	250
Sse9I	AATT	2 cut(s)	41, 244
SsiI	CCGC	1 cut(s)	326
SspMI	CTAG	1 cut(s)	228
TaaI	ACNGT	3 cut(s)	33, 106, 274
TaiI	ACGT	1 cut(s)	252
TaqI	TCGA	2 cut(s)	109, 143
TasI	AATT	2 cut(s)	41, 244
Tru1I	TTAA	2 cut(s)	17, 44
Tru9I	TTAA	2 cut(s)	17, 44
TscAI	CASTG	1 cut(s)	36
TseFI	GTSAC	2 cut(s)	47, 169
Tsp45I	GTSAC	2 cut(s)	47, 169
TspDTI	ATGAA	3 cut(s)	83, 161, 180
TspRI	CASTG	1 cut(s)	36
VneI	GTGCAC	1 cut(s)	286
VpaK11BI	GGWCC	1 cut(s)	127
XceI	RCATGY	1 cut(s)	91
XspI	CTAG	1 cut(s)	228

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.