MD12G1162100.v1.1

Glycerol-3-phosphate 2-O-acyltransferase

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr12
Physical Location & Seq
Reverse (-)
24325715 .. 24326773
1059 bp
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UTR
Exon/CDS
Intron
MD12G1162100.v1.1.491

Sequence Viewer

Length: 243 bp
ATGAATCCGATGCCAACTTACGAAATTACGTTCTTGAACCAGCTACCGTCGGAGCTCACTTGCAAAGGTGGGAAATCTGCCTATGAAGTTGCAAATTATATTCAGAGGGTGTTGGCTGGGACTTTGGGATTTGAGTGCACAAATTTAACTAGGAAGGACAAATATAGCATACTTGCAGGGACAGATGGCAGAGTGTCATCATCCAACAAGGAAAAGGAAAAGGAAAAGCAAAGGGCTTATTAA

Protein Analysis

81

Amino Acids

8.98

Weight (kDa)

8.95

Isoelectric Point (pI)

39.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 142
AgsI TTSAA 1 cut(s) 37
AluBI AGCT 2 cut(s) 43, 55
AluI AGCT 2 cut(s) 43, 55
Alw21I GWGCWC 2 cut(s) 57, 140
Alw44I GTGCAC 1 cut(s) 136
ApaLI GTGCAC 1 cut(s) 136
ApoI RAATTY 1 cut(s) 142
BaeGI GKGCMC 1 cut(s) 140
BanII GRGCYC 1 cut(s) 57
Bbv12I GWGCWC 2 cut(s) 57, 140
BccI CCATC 1 cut(s) 179
BfaI CTAG 1 cut(s) 150
BseGI GGATG 1 cut(s) 200
BseSI GKGCMC 1 cut(s) 140
BseYI CCCAGC 1 cut(s) 116
BsiHKAI GWGCWC 2 cut(s) 57, 140
BslFI GGGAC 2 cut(s) 133, 193
BsmFI GGGAC 2 cut(s) 133, 193
Bsp1286I GDGCHC 2 cut(s) 57, 140
Bst4CI ACNGT 1 cut(s) 48
BstF5I GGATG 1 cut(s) 200
BstSLI GKGCMC 1 cut(s) 140
BtsCI GGATG 1 cut(s) 200
CviJI RGCY 4 cut(s) 43, 55, 116, 236
CviKI_1 RGCY 4 cut(s) 43, 55, 116, 236
Ecl136II GAGCTC 1 cut(s) 55
Eco24I GRGCYC 1 cut(s) 57
Eco53kI GAGCTC 1 cut(s) 55
EcoICRI GAGCTC 1 cut(s) 55
EcoT38I GRGCYC 1 cut(s) 57
FaiI YATR 4 cut(s) 84, 99, 165, 170
FaqI GGGAC 2 cut(s) 133, 193
FokI GGATG 1 cut(s) 187
FriOI GRGCYC 1 cut(s) 57
FspBI CTAG 1 cut(s) 150
GsaI CCCAGC 1 cut(s) 120
HinfI GANTC 1 cut(s) 4
Hpy166II GTNNAC 1 cut(s) 138
Hpy188I TCNGA 3 cut(s) 9, 52, 105
Hpy188III TCNNGA 1 cut(s) 34
Hpy8I GTNNAC 1 cut(s) 138
Hpy99I CGWCG 1 cut(s) 52
HpyAV CCTTC 1 cut(s) 148
HpyCH4III ACNGT 1 cut(s) 48
HpyCH4IV ACGT 1 cut(s) 29
HpyCH4V TGCA 4 cut(s) 63, 92, 138, 176
HpySE526I ACGT 1 cut(s) 29
LmnI GCTCC 1 cut(s) 52
LpnPI CCDG 3 cut(s) 53, 102, 162
MaeI CTAG 1 cut(s) 150
MaeII ACGT 1 cut(s) 29
MhlI GDGCHC 2 cut(s) 57, 140
MluCI AATT 3 cut(s) 24, 94, 142
MmeI TCCRAC 2 cut(s) 30, 228
MnlI CCTC 1 cut(s) 99
MseI TTAA 2 cut(s) 146, 241
PfeI GAWTC 1 cut(s) 4
Psp124BI GAGCTC 1 cut(s) 57
PspFI CCCAGC 1 cut(s) 116
SacI GAGCTC 1 cut(s) 57
SaqAI TTAA 2 cut(s) 146, 241
SduI GDGCHC 2 cut(s) 57, 140
SetI ASST 4 cut(s) 32, 45, 57, 70
SgeI CNNG 8 cut(s) 46, 52, 72, 129, 162, 185, 189, 220
Sse9I AATT 3 cut(s) 24, 94, 142
SspMI CTAG 1 cut(s) 150
SstI GAGCTC 1 cut(s) 57
TaaI ACNGT 1 cut(s) 48
TaiI ACGT 1 cut(s) 32
TasI AATT 3 cut(s) 24, 94, 142
TfiI GAWTC 1 cut(s) 4
Tru1I TTAA 2 cut(s) 146, 241
Tru9I TTAA 2 cut(s) 146, 241
TspDTI ATGAA 2 cut(s) 17, 99
VneI GTGCAC 1 cut(s) 136
XapI RAATTY 1 cut(s) 142
XspI CTAG 1 cut(s) 150
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.