FvH4_4g03930

Glycerol-3-phosphate 2-O-acyltransferase 6-like

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
Physical Location & Seq
Forward (+)
3422290 .. 3423857
1568 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g03930.t1

Sequence Viewer

Length: 1491 bp
ATGGCCGCATTTCCAACTGTTGACAAATGCAAATCAAACGACCGGAAAAGCGCGACGGTTGTGGTGGCCGAAATGGTTGGATGCTTGCTCAGAGATGGTAGCTCCTTCCCTTACTTTGCCCTTGTCGCCTTCGACGTTGGCGGGATCTCGAGGCTCCTCGTGCTGCTCTTAGTTTGGCCATTATCTAGACTCCTCTATTACTTTGTATCGGAATCCGCAGCAACACAAGTCCTCATATTCACAACATTTGCTGGCGTGAATGTGTCTAAGATCGAGTCAGCAGCAACTGCCGTGCTGCCCAAGTTTTACTCGAGTGATCTACACCCCGAGACTTGGCGTGTGGTTTCTGAGTGCCAAAGGCGGTGTATTGTCACTGCAAGTATTCCGAGGATCATGGCTGAGCCATTTCTCAAGAGTTTCCTTGGATTTGATACGGTTTTGGGGACTGAGATAGCAACTTATAATGGTATAGCCACTGGCTTTGTTTGCTCATCTGGGCTACTTATAGGGCAGCACAAAGCAGATGCTCTTCACAAGGCTCTCGGAGCCAAAGCTCAGCCGGATATTGGAATTGGCAATAGGCAGTCTGATATTGGTTTGATTGCTCTGTGCAAGGAGGGTTATGTAGTGCCAGCCAAACCCAAACTAGAAGCTGTAAGAAGGGAGGAGCTGCCAAAGCCTATAATTTTCCATGACGGTCGCCTAGTGCAAAAGCCAACACCTCTCATAGCGCTCCTCATCATTCTTTGGTTCCCCATAGGTTTCTTCCTCGCTTGCTTGCGAATTGCTATTGTGCAGCTCCTGCCTCTGAGCCTCGCCTACTACTCCCTTTGGGCACTTGGTGTGCATGTCACTGTGAAGGGCACCCCACCAACATTGGCTAAACATCCTATGGATCGCAAAAACTCTGGTCAGATCTTTGTCATGAACCATAGAACCGTTTTTGATTCATTTTTCCTCTACCTCGCCCTAGGCTGCCCCATAACCGCTCCTACGTACTCAAGCTCCCGAATCATCGAGTTCATTTCACCCTTCAAGACCGTCCGAATAAGTCGTGATCGGAAACAGGATACAGCTATGATCAAGAAGCTTCTGCAAGAAGGCGATAACATAGCCATTTGCCCGGAGGGAACTACTTGTAGGGAACCATACGTTTTGCGATTTTCAGCATTGTTTGCTGAACTAAGTGATCAACTTGTCCCTGTGGCCTTGGTCGACCACCAGAGCATGTTTCATGGAACCACAGCTCGAGGGTGGAAAGCAATGGACACGTTTTTCTTCACGATGAACCCGAGGCCATCATATGAAGTCACATTCTTGAATAAGTTGGCTCCAGACCAAACATGCAATGCTACTTCTGGAAAGAATAGCTTTGAAGTTGCAAATTACGTACAAAGGGTCATAGCTGCAACTCTTTCCTACGAGTGCACTAGCTTTACAAGGAAGGACAAGTATCGGGCTCTTGCAGGGAATGATGGAAACGTGGTTTGA

Protein Analysis

497

Amino Acids

54.76

Weight (kDa)

9.08

Isoelectric Point (pI)

36.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HAD_RAM2_N PF23270 21 - 210 2.9e-55 Glycerol-3-phosphate acyltransferase RAM2-like, HAD-like domain
HAD PF12710 30 - 200 1.3e-16 haloacid dehalogenase-like hydrolase
Acyltransferase PF01553 301 - 403 1.6e-08 Acyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 462
AccB1I GGYRCC 1 cut(s) 863
AccBSI CCGCTC 1 cut(s) 989
AccI GTMKAC 1 cut(s) 1215
AccII CGCG 1 cut(s) 53
AciI CCGC 5 cut(s) 6, 141, 216, 361, 987
AclWI GGATC 3 cut(s) 152, 398, 903
AcoI YGGCCR 3 cut(s) 3, 66, 176
AdeI CACNNNGTG 1 cut(s) 842
AfaI GTAC 2 cut(s) 998, 1392
AfeI AGCGCT 1 cut(s) 732
AfiI CCNNNNNNNGG 2 cut(s) 333, 566
AflIII ACRYGT 1 cut(s) 1269
AgsI TTSAA 3 cut(s) 1036, 1321, 1376
Alw21I GWGCWC 1 cut(s) 1430
Alw26I GTCTC 1 cut(s) 323
Alw44I GTGCAC 1 cut(s) 1426
AlwI GGATC 3 cut(s) 152, 398, 903
AlwNI CAGNNNCTG 2 cut(s) 287, 802
Ama87I CYCGRG 5 cut(s) 148, 310, 326, 1248, 1291
Aor51HI AGCGCT 1 cut(s) 732
AoxI GGCC 5 cut(s) 3, 66, 176, 1206, 1295
ApaLI GTGCAC 1 cut(s) 1426
ApeKI GCWGC 9 cut(s) 163, 218, 281, 295, 511, 670, 796, 975, 1406
AspA2I CCTAGG 1 cut(s) 970
AspLEI GCGC 2 cut(s) 53, 733
AsuC2I CCSGG 1 cut(s) 1124
AsuHPI GGTGA 1 cut(s) 1020
AvaI CYCGRG 5 cut(s) 148, 310, 326, 1248, 1291
AvrII CCTAGG 1 cut(s) 970
BaeGI GKGCMC 3 cut(s) 838, 866, 1430
BalI TGGCCA 1 cut(s) 178
BanI GGYRCC 1 cut(s) 863
BanII GRGCYC 1 cut(s) 1462
BauI CACGAG 1 cut(s) 158
Bbv12I GWGCWC 1 cut(s) 1430
BbvI GCAGC 9 cut(s) 150, 230, 282, 293, 523, 657, 808, 962, 1393
BccI CCATC 3 cut(s) 89, 1306, 1469
BceAI ACGGC 1 cut(s) 275
BciVI GTATCC 1 cut(s) 1063
BclI TGATCA 2 cut(s) 1080, 1189
BcnI CCSGG 1 cut(s) 1124
BcoDI GTCTC 1 cut(s) 323
BfaI CTAG 5 cut(s) 186, 647, 704, 971, 1431
BfoI RGCGCY 1 cut(s) 734
BfuI GTATCC 1 cut(s) 1063
BglII AGATCT 1 cut(s) 915
BlnI CCTAGG 1 cut(s) 970
BlpI GCTNAGC 2 cut(s) 399, 555
Bme1390I CCNGG 1 cut(s) 1124
BmeT110I CYCGRG 5 cut(s) 148, 310, 326, 1248, 1291
BmiI GGNNCC 7 cut(s) 155, 547, 752, 865, 1146, 1240, 1332
BmrFI CCNGG 1 cut(s) 1124
BmsI GCATC 2 cut(s) 71, 514
BpmI CTGGAG 1 cut(s) 1317
Bpu1102I GCTNAGC 2 cut(s) 399, 555
BpuEI CTTGAG 2 cut(s) 395, 985
BpuMI CCSGG 1 cut(s) 1124
BsaAI YACGTR 2 cut(s) 996, 1390
BsaJI CCNNGG 5 cut(s) 386, 421, 970, 1209, 1292
BsaWI WCCGGW 1 cut(s) 42
BsaXI ACNNNNNCTCC 2 cut(s) 989, 1019
Bsc4I CCNNNNNNNGG 2 cut(s) 333, 566
Bse1I ACTGG 1 cut(s) 481
Bse3DI GCAATG 2 cut(s) 1269, 1354
BseDI CCNNGG 5 cut(s) 386, 421, 970, 1209, 1292
BseGI GGATG 2 cut(s) 86, 886
BseLI CCNNNNNNNGG 2 cut(s) 333, 566
BseMI GCAATG 2 cut(s) 1269, 1354
BseMII CTCAG 6 cut(s) 103, 339, 390, 438, 569, 800
BseNI ACTGG 1 cut(s) 481
BseRI GAGGAG 4 cut(s) 146, 182, 680, 725
BseSI GKGCMC 3 cut(s) 838, 866, 1430
BseXI GCAGC 9 cut(s) 150, 230, 282, 293, 523, 657, 808, 962, 1393
BsgI GTGCAG 1 cut(s) 815
Bsh1236I CGCG 1 cut(s) 53
Bsh1285I CGRYCG 2 cut(s) 43, 700
BshFI GGCC 5 cut(s) 5, 68, 178, 1208, 1297
BshNI GGYRCC 1 cut(s) 863
BsiEI CGRYCG 2 cut(s) 43, 700
BsiHKAI GWGCWC 1 cut(s) 1430
BsiHKCI CYCGRG 5 cut(s) 148, 310, 326, 1248, 1291
BsiSI CCGG 3 cut(s) 43, 560, 1124
BslFI GGGAC 2 cut(s) 457, 1184
BslI CCNNNNNNNGG 2 cut(s) 333, 566
BsmAI GTCTC 1 cut(s) 323
BsmFI GGGAC 2 cut(s) 457, 1184
BsnI GGCC 5 cut(s) 5, 68, 178, 1208, 1297
BsoBI CYCGRG 5 cut(s) 148, 310, 326, 1248, 1291
Bsp1286I GDGCHC 4 cut(s) 838, 866, 1430, 1462
Bsp143I GATC 9 cut(s) 144, 270, 316, 390, 895, 915, 1057, 1080, 1189
Bsp1720I GCTNAGC 2 cut(s) 399, 555
BspACI CCGC 5 cut(s) 6, 141, 216, 361, 987
BspANI GGCC 5 cut(s) 5, 68, 178, 1208, 1297
BspCNI CTCAG 6 cut(s) 102, 340, 391, 439, 568, 801
BspFNI CGCG 1 cut(s) 53
BspHI TCATGA 1 cut(s) 924
BspLI GGNNCC 7 cut(s) 155, 547, 752, 865, 1146, 1240, 1332
BspPI GGATC 3 cut(s) 152, 398, 903
BspQI GCTCTTC 1 cut(s) 534
BspT107I GGYRCC 1 cut(s) 863
BsrBI CCGCTC 1 cut(s) 989
BsrDI GCAATG 2 cut(s) 1269, 1354
BsrI ACTGG 1 cut(s) 481
BssECI CCNNGG 5 cut(s) 386, 421, 970, 1209, 1292
BssMI GATC 9 cut(s) 144, 270, 316, 390, 895, 915, 1057, 1080, 1189
BssSI CACGAG 1 cut(s) 158
BssT1I CCWWGG 3 cut(s) 421, 970, 1209
Bst2BI CACGAG 1 cut(s) 158
Bst4CI ACNGT 7 cut(s) 19, 58, 436, 698, 856, 940, 1042
Bst6I CTCTTC 1 cut(s) 534
BstAPI GCANNNNNTGC 3 cut(s) 287, 802, 1175
BstBAI YACGTR 2 cut(s) 996, 1390
BstC8I GCNNGC 5 cut(s) 86, 253, 633, 775, 779
BstDEI CTNAG 9 cut(s) 89, 169, 267, 348, 399, 447, 555, 809, 1184
BstF5I GGATG 2 cut(s) 86, 886
BstFNI CGCG 1 cut(s) 53
BstH2I RGCGCY 1 cut(s) 734
BstHHI GCGC 2 cut(s) 53, 733
BstKTI GATC 9 cut(s) 147, 273, 319, 393, 898, 918, 1060, 1083, 1192
BstMAI GTCTC 1 cut(s) 323
BstMBI GATC 9 cut(s) 144, 270, 316, 390, 895, 915, 1057, 1080, 1189
BstMCI CGRYCG 2 cut(s) 43, 700
BstMWI GCNNNNNNNGC 8 cut(s) 125, 160, 287, 486, 545, 676, 802, 1175
BstNSI RCATGY 3 cut(s) 851, 1231, 1347
BstSCI CCNGG 1 cut(s) 1122
BstSLI GKGCMC 3 cut(s) 838, 866, 1430
BstSNI TACGTA 2 cut(s) 996, 1390
BstUI CGCG 1 cut(s) 53
BstV1I GCAGC 9 cut(s) 150, 230, 282, 293, 523, 657, 808, 962, 1393
BstX2I RGATCY 2 cut(s) 144, 915
BstYI RGATCY 2 cut(s) 144, 915
BsuI GTATCC 1 cut(s) 1063
BsuRI GGCC 5 cut(s) 5, 68, 178, 1208, 1297
BtsCI GGATG 2 cut(s) 86, 886
BtsI GCAGTG 1 cut(s) 372
BtsIMutI CAGTG 3 cut(s) 372, 474, 852
Cac8I GCNNGC 5 cut(s) 86, 253, 633, 775, 779
CaiI CAGNNNCTG 2 cut(s) 287, 802
CciI TCATGA 1 cut(s) 924
CfoI GCGC 2 cut(s) 53, 733
Csp6I GTAC 2 cut(s) 997, 1391
CspCI CAANNNNNGTGG 4 cut(s) 463, 498, 858, 893
CviAII CATG 7 cut(s) 394, 692, 848, 925, 1228, 1235, 1344
CviQI GTAC 2 cut(s) 997, 1391
DdeI CTNAG 9 cut(s) 89, 169, 267, 348, 399, 447, 555, 809, 1184
DpnI GATC 9 cut(s) 146, 272, 318, 392, 897, 917, 1059, 1082, 1191
DpnII GATC 9 cut(s) 144, 270, 316, 390, 895, 915, 1057, 1080, 1189
DraIII CACNNNGTG 1 cut(s) 842
EaeI YGGCCR 3 cut(s) 3, 66, 176
Eam1104I CTCTTC 1 cut(s) 534
EarI CTCTTC 1 cut(s) 534
Eco105I TACGTA 2 cut(s) 996, 1390
Eco130I CCWWGG 3 cut(s) 421, 970, 1209
Eco24I GRGCYC 1 cut(s) 1462
Eco47III AGCGCT 1 cut(s) 732
Eco88I CYCGRG 5 cut(s) 148, 310, 326, 1248, 1291
EcoT14I CCWWGG 3 cut(s) 421, 970, 1209
EcoT38I GRGCYC 1 cut(s) 1462
ErhI CCWWGG 3 cut(s) 421, 970, 1209
FaeI CATG 7 cut(s) 397, 695, 851, 928, 1231, 1238, 1347
FalI AAGNNNNNCTT 2 cut(s) 1355, 1387
FaqI GGGAC 2 cut(s) 457, 1184
FatI CATG 7 cut(s) 393, 691, 847, 924, 1227, 1234, 1343
FauI CCCGC 1 cut(s) 134
FauNDI CATATG 1 cut(s) 1303
FbaI TGATCA 2 cut(s) 1080, 1189
FblI GTMKAC 1 cut(s) 1215
FokI GGATG 2 cut(s) 93, 873
FriOI GRGCYC 1 cut(s) 1462
FspBI CTAG 5 cut(s) 186, 647, 704, 971, 1431
GlaI GCGC 2 cut(s) 52, 732
GsuI CTGGAG 1 cut(s) 1317
HaeII RGCGCY 1 cut(s) 734
HaeIII GGCC 5 cut(s) 5, 68, 178, 1208, 1297
HapII CCGG 3 cut(s) 43, 560, 1124
HhaI GCGC 2 cut(s) 53, 733
Hin1II CATG 7 cut(s) 397, 695, 851, 928, 1231, 1238, 1347
Hin6I GCGC 2 cut(s) 51, 731
HinP1I GCGC 2 cut(s) 51, 731
HincII GTYRAC 2 cut(s) 22, 1216
HindII GTYRAC 2 cut(s) 22, 1216
HindIII AAGCTT 1 cut(s) 1088
HinfI GANTC 5 cut(s) 189, 212, 275, 947, 1011
HpaII CCGG 3 cut(s) 43, 560, 1124
HphI GGTGA 1 cut(s) 1020
Hpy166II GTNNAC 3 cut(s) 22, 1216, 1428
Hpy8I GTNNAC 3 cut(s) 22, 1216, 1428
Hpy99I CGWCG 2 cut(s) 58, 137
HpyAV CCTTC 7 cut(s) 115, 139, 654, 853, 1042, 1094, 1438
HpyCH4III ACNGT 7 cut(s) 19, 58, 436, 698, 856, 940, 1042
HpyCH4IV ACGT 6 cut(s) 135, 995, 1152, 1271, 1389, 1482
HpyF10VI GCNNNNNNNGC 8 cut(s) 125, 160, 287, 486, 545, 676, 802, 1175
HpyF3I CTNAG 9 cut(s) 89, 169, 267, 348, 399, 447, 555, 809, 1184
HpySE526I ACGT 6 cut(s) 135, 995, 1152, 1271, 1389, 1482
Hsp92II CATG 7 cut(s) 397, 695, 851, 928, 1231, 1238, 1347
HspAI GCGC 2 cut(s) 51, 731
Ksp22I TGATCA 2 cut(s) 1080, 1189
Kzo9I GATC 9 cut(s) 144, 270, 316, 390, 895, 915, 1057, 1080, 1189
LguI GCTCTTC 1 cut(s) 534
LmnI GCTCC 9 cut(s) 107, 159, 545, 667, 738, 804, 994, 1010, 1336
Lsp1109I GCAGC 9 cut(s) 150, 230, 282, 293, 523, 657, 808, 962, 1393
LweI GCATC 2 cut(s) 71, 514
MaeI CTAG 5 cut(s) 186, 647, 704, 971, 1431
MaeII ACGT 6 cut(s) 135, 995, 1152, 1271, 1389, 1482
MaeIII GTNAC 3 cut(s) 370, 850, 1309
MalI GATC 9 cut(s) 146, 272, 318, 392, 897, 917, 1059, 1082, 1191
MbiI CCGCTC 1 cut(s) 989
MboI GATC 9 cut(s) 144, 270, 316, 390, 895, 915, 1057, 1080, 1189
MboII GAAGA 3 cut(s) 521, 757, 1270
MflI RGATCY 2 cut(s) 144, 915
MhlI GDGCHC 4 cut(s) 838, 866, 1430, 1462
MlsI TGGCCA 1 cut(s) 178
MluCI AATT 4 cut(s) 570, 684, 783, 1384
MluNI TGGCCA 1 cut(s) 178
MlyI GAGTC 2 cut(s) 183, 284
MmeI TCCRAC 2 cut(s) 38, 58
Mox20I TGGCCA 1 cut(s) 178
MscI TGGCCA 1 cut(s) 178
Msp20I TGGCCA 1 cut(s) 178
MspI CCGG 3 cut(s) 43, 560, 1124
MspR9I CCNGG 1 cut(s) 1124
MvnI CGCG 1 cut(s) 53
MwoI GCNNNNNNNGC 8 cut(s) 125, 160, 287, 486, 545, 676, 802, 1175
NciI CCSGG 1 cut(s) 1124
NdeI CATATG 1 cut(s) 1303
NdeII GATC 9 cut(s) 144, 270, 316, 390, 895, 915, 1057, 1080, 1189
NlaIII CATG 7 cut(s) 397, 695, 851, 928, 1231, 1238, 1347
NlaIV GGNNCC 7 cut(s) 155, 547, 752, 865, 1146, 1240, 1332
NmuCI GTSAC 3 cut(s) 370, 850, 1309
NspI RCATGY 3 cut(s) 851, 1231, 1347
PaeR7I CTCGAG 3 cut(s) 148, 310, 1248
PagI TCATGA 1 cut(s) 924
PciSI GCTCTTC 1 cut(s) 534
PcsI WCGNNNNNNNCGW 2 cut(s) 132, 1289
PfeI GAWTC 3 cut(s) 212, 947, 1011
PleI GAGTC 2 cut(s) 183, 283
PpsI GAGTC 2 cut(s) 183, 283
Ppu21I YACGTR 2 cut(s) 996, 1390
PsiI TTATAA 1 cut(s) 462
PspN4I GGNNCC 7 cut(s) 155, 547, 752, 865, 1146, 1240, 1332
PspXI VCTCGAGB 2 cut(s) 310, 1248
PstNI CAGNNNCTG 2 cut(s) 287, 802
PsuI RGATCY 2 cut(s) 144, 915
RsaI GTAC 2 cut(s) 998, 1392
RsaNI GTAC 2 cut(s) 997, 1391
SalI GTCGAC 1 cut(s) 1214
SapI GCTCTTC 1 cut(s) 534
Sau3AI GATC 9 cut(s) 144, 270, 316, 390, 895, 915, 1057, 1080, 1189
SchI GAGTC 2 cut(s) 183, 284
ScrFI CCNGG 1 cut(s) 1124
SduI GDGCHC 4 cut(s) 838, 866, 1430, 1462
SfaNI GCATC 2 cut(s) 71, 514
Sfr274I CTCGAG 3 cut(s) 148, 310, 1248
SlaI CTCGAG 3 cut(s) 148, 310, 1248
SmlI CTYRAG 5 cut(s) 148, 310, 410, 1000, 1248
SmoI CTYRAG 5 cut(s) 148, 310, 410, 1000, 1248
SnaBI TACGTA 2 cut(s) 996, 1390
Sse9I AATT 4 cut(s) 570, 684, 783, 1384
SsiI CCGC 5 cut(s) 6, 141, 216, 361, 987
SspMI CTAG 5 cut(s) 186, 647, 704, 971, 1431
StyD4I CCNGG 1 cut(s) 1122
StyI CCWWGG 3 cut(s) 421, 970, 1209
TaaI ACNGT 7 cut(s) 19, 58, 436, 698, 856, 940, 1042
TaiI ACGT 6 cut(s) 138, 998, 1155, 1274, 1392, 1485
TaqI TCGA 7 cut(s) 132, 149, 273, 311, 1017, 1215, 1249
TasI AATT 4 cut(s) 570, 684, 783, 1384
TauI GCSGC 1 cut(s) 8
TfiI GAWTC 3 cut(s) 212, 947, 1011
TscAI CASTG 3 cut(s) 379, 481, 859
TseFI GTSAC 3 cut(s) 370, 850, 1309
TseI GCWGC 9 cut(s) 163, 218, 281, 295, 511, 670, 796, 975, 1406
Tsp45I GTSAC 3 cut(s) 370, 850, 1309
TspDTI ATGAA 6 cut(s) 939, 941, 1012, 1223, 1301, 1320
TspRI CASTG 3 cut(s) 379, 481, 859
VneI GTGCAC 1 cut(s) 1426
XbaI TCTAGA 1 cut(s) 185
XceI RCATGY 3 cut(s) 851, 1231, 1347
XhoI CTCGAG 3 cut(s) 148, 310, 1248
XmaJI CCTAGG 1 cut(s) 970
XmiI GTMKAC 1 cut(s) 1215
XspI CTAG 5 cut(s) 186, 647, 704, 971, 1431
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.