FvH4_2g10590

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0006385
Physical Location & Seq
Forward (+)
9374658 .. 9377642
2985 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g10590.t1

Sequence Viewer

Length: 1089 bp
ATGATGCGGAGGAGGAGTACTTGCGGGAGGCAGCTTATAAGCCGTCGTCCGAGGGTGGCTGGAACTTTTCCTGTCGCTTCGGCTCCCAAATTCTTTTCCCTTTCAGCGCGCGCGCGTGGTTGTGTTGGTGTTTCACATATTAGTTCGCTTGATACGTCGACCCGGCCGCTCAAGTATTCCTCCCGGACGAAACTAACCTTCTCACGTCCTAAGAGTAACCCAGTGCTGAGGGAGCTCAACGGCAAACTCTACTGCATCGACACCAACCCCGAAAGGATTGGGGGGATTGATCCTCAAGCTCGCCCTTTTGAGGTTTTAGATCCCGAAAACGACCTCAAGTGGCGGCCTCTGGATGCTCCTCCCTTTATGCAAAGAGACACGTATCGCTTCTTTGCCTCATTTTTGGAGGGGAGCAACAAAATCTTAGGTTGGGCGTGCAAGCAGCCTGGAGGTTATTTGGGTAAGCTGCCTGCTGGAGAACAAGCGTGCGAGCCGCCTGAGCATCCTGGAGTGTTTTGCTTTGATGCAACCAAGCCTGAAAATGGATGGACCGAGTCATCTTTCAGTTTGGGTAACACCCTTCCCTCTCTTGGCTACCAAATTAGGACTCCTATCTTCATCCAAAACCATCATCCCAATCTTGGTGCTTTCCACCTATTGTTTACCTATGATCCTATCGATGACCCTCTCCGTGTATCCGCCTTTTTCATGTCAGACAATTGTGATAATTTTCATCGCATCATACCCACACCTCTCAAGCTGCCAGATTTGTGTTATGAATATAACGAATTCAGAGAACCACATTCCGACACTACCTATACTGATTTTAAATTTGTCCATCTCGGAGCTCAAAAAGTCTGCCTTGTTTTGAACAAATTCTTCTCTGATGATCATTTTCAAGATAGAAATACGGGGAAGATTCTTCTCATAACATTTGAATATGACATTATTCCTACTACTGTCAAGGACTACTGCTTCAAATCAACAGTCCAGATCCAAACCCGATTGCTGAGGACCCGCCGCTTTCGATACCATTCCAGCAAGCTGCGTAAACCAGATGATACACGCACCACCAGTTTTTTTGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

363

Amino Acids

41.53

Weight (kDa)

9.24

Isoelectric Point (pI)

37.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 38
AccBSI CCGCTC 1 cut(s) 169
AccI GTMKAC 1 cut(s) 158
AccII CGCG 4 cut(s) 109, 111, 113, 115
AciI CCGC 8 cut(s) 7, 24, 167, 343, 494, 699, 1018, 1021
AclWI GGATC 4 cut(s) 284, 314, 665, 988
AcoI YGGCCR 1 cut(s) 164
AcsI RAATTY 4 cut(s) 89, 788, 830, 875
AfaI GTAC 1 cut(s) 19
AfiI CCNNNNNNNGG 4 cut(s) 310, 542, 590, 641
AflIII ACRYGT 1 cut(s) 378
AgsI TTSAA 4 cut(s) 871, 899, 938, 979
AjiI CACGTC 1 cut(s) 206
AjnI CCWGG 2 cut(s) 445, 505
AluBI AGCT 7 cut(s) 34, 235, 299, 466, 760, 848, 1045
AluI AGCT 7 cut(s) 34, 235, 299, 466, 760, 848, 1045
Alw21I GWGCWC 2 cut(s) 237, 850
Alw26I GTCTC 1 cut(s) 369
AlwI GGATC 4 cut(s) 284, 314, 665, 988
AoxI GGCC 2 cut(s) 164, 344
ApeKI GCWGC 5 cut(s) 31, 442, 466, 760, 1045
ApoI RAATTY 4 cut(s) 89, 788, 830, 875
ArsI GACNNNNNNTTYG 2 cut(s) 972, 1004
Asp700I GAANNNNTTC 1 cut(s) 875
AspLEI GCGC 4 cut(s) 109, 111, 113, 115
AspS9I GGNCC 2 cut(s) 549, 1014
AsuC2I CCSGG 2 cut(s) 163, 184
AvaII GGWCC 2 cut(s) 549, 1014
BanII GRGCYC 2 cut(s) 237, 850
Bbv12I GWGCWC 2 cut(s) 237, 850
BbvCI CCTCAGC 2 cut(s) 227, 1010
BbvI GCAGC 5 cut(s) 43, 453, 454, 747, 1032
BccI CCATC 3 cut(s) 540, 636, 846
BceAI ACGGC 2 cut(s) 27, 256
BciT130I CCWGG 2 cut(s) 447, 507
BciVI GTATCC 1 cut(s) 706
BclI TGATCA 1 cut(s) 889
BcnI CCSGG 2 cut(s) 163, 184
BcoDI GTCTC 1 cut(s) 369
BfuI GTATCC 1 cut(s) 706
BisI GCNGC 9 cut(s) 32, 167, 344, 443, 467, 494, 761, 1021, 1046
BlsI GCNGC 9 cut(s) 33, 168, 345, 444, 468, 495, 762, 1022, 1047
BmcAI AGTACT 1 cut(s) 19
Bme1390I CCNGG 4 cut(s) 163, 184, 447, 507
Bme18I GGWCC 2 cut(s) 549, 1014
BmgBI CACGTC 1 cut(s) 206
BmgT120I GGNCC 2 cut(s) 549, 1014
BmiI GGNNCC 2 cut(s) 84, 1016
BmrFI CCNGG 4 cut(s) 163, 184, 447, 507
BmrI ACTGGG 1 cut(s) 215
BmsI GCATC 5 cut(s) 264, 343, 511, 514, 747
BmuI ACTGGG 1 cut(s) 215
BpmI CTGGAG 3 cut(s) 468, 495, 528
Bpu10I CCTNAGC 3 cut(s) 227, 498, 1010
BpuEI CTTGAG 4 cut(s) 155, 279, 320, 740
BpuMI CCSGG 2 cut(s) 163, 184
Bsa29I ATCGAT 1 cut(s) 678
BsaAI YACGTR 1 cut(s) 381
BsaJI CCNNGG 1 cut(s) 50
BsaXI ACNNNNNCTCC 1 cut(s) 31
Bsc4I CCNNNNNNNGG 4 cut(s) 310, 542, 590, 641
Bse1I ACTGG 2 cut(s) 221, 1074
BseBI CCWGG 2 cut(s) 447, 507
BseCI ATCGAT 1 cut(s) 678
BseDI CCNNGG 1 cut(s) 50
BseGI GGATG 5 cut(s) 358, 502, 551, 618, 631
BseLI CCNNNNNNNGG 4 cut(s) 310, 542, 590, 641
BseMII CTCAG 3 cut(s) 218, 489, 1001
BseNI ACTGG 2 cut(s) 221, 1074
BsePI GCGCGC 3 cut(s) 107, 109, 111
BseRI GAGGAG 3 cut(s) 25, 28, 348
BseX3I CGGCCG 1 cut(s) 164
BseXI GCAGC 5 cut(s) 43, 453, 454, 747, 1032
Bsh1236I CGCG 4 cut(s) 109, 111, 113, 115
Bsh1285I CGRYCG 1 cut(s) 167
BshFI GGCC 2 cut(s) 166, 346
BshVI ATCGAT 1 cut(s) 678
BsiEI CGRYCG 1 cut(s) 167
BsiHKAI GWGCWC 2 cut(s) 237, 850
BsiSI CCGG 2 cut(s) 163, 184
BslI CCNNNNNNNGG 4 cut(s) 310, 542, 590, 641
BsmAI GTCTC 1 cut(s) 369
BsnI GGCC 2 cut(s) 166, 346
Bsp1286I GDGCHC 2 cut(s) 237, 850
Bsp143I GATC 5 cut(s) 289, 319, 670, 889, 993
BspACI CCGC 8 cut(s) 7, 24, 167, 343, 494, 699, 1018, 1021
BspANI GGCC 2 cut(s) 166, 346
BspCNI CTCAG 3 cut(s) 219, 490, 1002
BspDI ATCGAT 1 cut(s) 678
BspFNI CGCG 4 cut(s) 109, 111, 113, 115
BspLI GGNNCC 2 cut(s) 84, 1016
BspPI GGATC 4 cut(s) 284, 314, 665, 988
BsrBI CCGCTC 1 cut(s) 169
BsrI ACTGG 2 cut(s) 221, 1074
BssECI CCNNGG 1 cut(s) 50
BssHII GCGCGC 3 cut(s) 107, 109, 111
BssMI GATC 5 cut(s) 289, 319, 670, 889, 993
Bst2UI CCWGG 2 cut(s) 447, 507
Bst4CI ACNGT 2 cut(s) 961, 988
BstBAI YACGTR 1 cut(s) 381
BstDEI CTNAG 5 cut(s) 210, 227, 424, 498, 1010
BstF5I GGATG 5 cut(s) 358, 502, 551, 618, 631
BstFNI CGCG 4 cut(s) 109, 111, 113, 115
BstHHI GCGC 4 cut(s) 109, 111, 113, 115
BstKTI GATC 5 cut(s) 292, 322, 673, 892, 996
BstMAI GTCTC 1 cut(s) 369
BstMBI GATC 5 cut(s) 289, 319, 670, 889, 993
BstMCI CGRYCG 1 cut(s) 167
BstMWI GCNNNNNNNGC 2 cut(s) 232, 499
BstNI CCWGG 2 cut(s) 447, 507
BstSCI CCNGG 4 cut(s) 161, 182, 445, 505
BstUI CGCG 4 cut(s) 109, 111, 113, 115
BstV1I GCAGC 5 cut(s) 43, 453, 454, 747, 1032
BstX2I RGATCY 2 cut(s) 319, 993
BstYI RGATCY 2 cut(s) 319, 993
BstZI CGGCCG 1 cut(s) 164
Bsu15I ATCGAT 1 cut(s) 678
BsuI GTATCC 1 cut(s) 706
BsuRI GGCC 2 cut(s) 166, 346
BsuTUI ATCGAT 1 cut(s) 678
BtgZI GCGATG 1 cut(s) 719
BtrI CACGTC 1 cut(s) 206
BtsCI GGATG 5 cut(s) 358, 502, 551, 618, 631
BtsIMutI CAGTG 1 cut(s) 228
CfoI GCGC 4 cut(s) 109, 111, 113, 115
Cfr13I GGNCC 2 cut(s) 549, 1014
ClaI ATCGAT 1 cut(s) 678
Csp6I GTAC 1 cut(s) 18
CviAII CATG 2 cut(s) 709, 1086
CviQI GTAC 1 cut(s) 18
DdeI CTNAG 5 cut(s) 210, 227, 424, 498, 1010
DpnI GATC 5 cut(s) 291, 321, 672, 891, 995
DpnII GATC 5 cut(s) 289, 319, 670, 889, 993
DraI TTTAAA 1 cut(s) 829
EaeI YGGCCR 1 cut(s) 164
EagI CGGCCG 1 cut(s) 164
EciI GGCGGA 1 cut(s) 688
Ecl136II GAGCTC 2 cut(s) 235, 848
EclXI CGGCCG 1 cut(s) 164
Eco24I GRGCYC 2 cut(s) 237, 850
Eco47I GGWCC 2 cut(s) 549, 1014
Eco52I CGGCCG 1 cut(s) 164
Eco53kI GAGCTC 2 cut(s) 235, 848
EcoICRI GAGCTC 2 cut(s) 235, 848
EcoO109I RGGNCCY 1 cut(s) 1014
EcoRI GAATTC 1 cut(s) 788
EcoRII CCWGG 2 cut(s) 445, 505
EcoT38I GRGCYC 2 cut(s) 237, 850
FaeI CATG 2 cut(s) 712, 1089
FalI AAGNNNNNCTT 2 cut(s) 846, 878
FatI CATG 2 cut(s) 708, 1085
FauI CCCGC 2 cut(s) 17, 1025
FbaI TGATCA 1 cut(s) 889
FblI GTMKAC 1 cut(s) 158
Fnu4HI GCNGC 9 cut(s) 32, 167, 344, 443, 467, 494, 761, 1021, 1046
FokI GGATG 5 cut(s) 365, 489, 558, 605, 618
FriOI GRGCYC 2 cut(s) 237, 850
Fsp4HI GCNGC 9 cut(s) 32, 167, 344, 443, 467, 494, 761, 1021, 1046
GlaI GCGC 4 cut(s) 108, 110, 112, 114
GluI GCNGC 9 cut(s) 32, 167, 344, 443, 467, 494, 761, 1021, 1046
GsuI CTGGAG 3 cut(s) 468, 495, 528
HaeIII GGCC 2 cut(s) 166, 346
HapII CCGG 2 cut(s) 163, 184
HhaI GCGC 4 cut(s) 109, 111, 113, 115
Hin1II CATG 2 cut(s) 712, 1089
Hin6I GCGC 4 cut(s) 107, 109, 111, 113
HinP1I GCGC 4 cut(s) 107, 109, 111, 113
HincII GTYRAC 1 cut(s) 159
HindII GTYRAC 1 cut(s) 159
HinfI GANTC 3 cut(s) 554, 607, 919
HpaII CCGG 2 cut(s) 163, 184
Hpy166II GTNNAC 3 cut(s) 159, 663, 1052
Hpy188I TCNGA 6 cut(s) 51, 715, 794, 808, 845, 886
Hpy188III TCNNGA 4 cut(s) 323, 350, 899, 991
Hpy8I GTNNAC 3 cut(s) 159, 663, 1052
Hpy99I CGWCG 2 cut(s) 48, 160
HpyAV CCTTC 2 cut(s) 208, 590
HpyCH4III ACNGT 2 cut(s) 961, 988
HpyCH4IV ACGT 3 cut(s) 155, 205, 380
HpyCH4V TGCA 5 cut(s) 255, 370, 438, 527, 1085
HpyF10VI GCNNNNNNNGC 2 cut(s) 232, 499
HpyF3I CTNAG 5 cut(s) 210, 227, 424, 498, 1010
HpySE526I ACGT 3 cut(s) 155, 205, 380
Hsp92II CATG 2 cut(s) 712, 1089
HspAI GCGC 4 cut(s) 107, 109, 111, 113
Ksp22I TGATCA 1 cut(s) 889
Kzo9I GATC 5 cut(s) 289, 319, 670, 889, 993
LmnI GCTCC 5 cut(s) 88, 232, 361, 411, 845
Lsp1109I GCAGC 5 cut(s) 43, 453, 454, 747, 1032
LweI GCATC 5 cut(s) 264, 343, 511, 514, 747
MaeII ACGT 3 cut(s) 155, 205, 380
MaeIII GTNAC 2 cut(s) 215, 572
MalI GATC 5 cut(s) 291, 321, 672, 891, 995
MauBI CGCGCGCG 2 cut(s) 109, 111
MbiI CCGCTC 1 cut(s) 169
MboI GATC 5 cut(s) 289, 319, 670, 889, 993
MboII GAAGA 4 cut(s) 607, 871, 914, 928
MfeI CAATTG 1 cut(s) 718
MflI RGATCY 2 cut(s) 319, 993
MhlI GDGCHC 2 cut(s) 237, 850
MluCI AATT 7 cut(s) 89, 600, 718, 727, 788, 830, 875
MlyI GAGTC 2 cut(s) 563, 601
MmeI TCCRAC 1 cut(s) 831
MroXI GAANNNNTTC 1 cut(s) 875
MseI TTAA 1 cut(s) 828
MspI CCGG 2 cut(s) 163, 184
MspR9I CCNGG 4 cut(s) 163, 184, 447, 507
MunI CAATTG 1 cut(s) 718
MvaI CCWGG 2 cut(s) 447, 507
MvnI CGCG 4 cut(s) 109, 111, 113, 115
MwoI GCNNNNNNNGC 2 cut(s) 232, 499
NciI CCSGG 2 cut(s) 163, 184
NdeII GATC 5 cut(s) 289, 319, 670, 889, 993
NlaIII CATG 2 cut(s) 712, 1089
NlaIV GGNNCC 2 cut(s) 84, 1016
PauI GCGCGC 3 cut(s) 107, 109, 111
PcsI WCGNNNNNNNCGW 1 cut(s) 152
PdmI GAANNNNTTC 1 cut(s) 875
PfeI GAWTC 1 cut(s) 919
PflFI GACNNNGTC 1 cut(s) 553
PfoI TCCNGGA 2 cut(s) 182, 505
PkrI GCNGC 9 cut(s) 33, 168, 345, 444, 468, 495, 762, 1022, 1047
PleI GAGTC 2 cut(s) 562, 601
PpsI GAGTC 2 cut(s) 562, 601
Ppu21I YACGTR 1 cut(s) 381
PpuMI RGGWCCY 1 cut(s) 1014
PsiI TTATAA 1 cut(s) 38
Psp124BI GAGCTC 2 cut(s) 237, 850
Psp5II RGGWCCY 1 cut(s) 1014
Psp6I CCWGG 2 cut(s) 445, 505
PspGI CCWGG 2 cut(s) 445, 505
PspN4I GGNNCC 2 cut(s) 84, 1016
PspPI GGNCC 2 cut(s) 549, 1014
PspPPI RGGWCCY 1 cut(s) 1014
PsuI RGATCY 2 cut(s) 319, 993
PsyI GACNNNGTC 1 cut(s) 553
PteI GCGCGC 3 cut(s) 107, 109, 111
RsaI GTAC 1 cut(s) 19
RsaNI GTAC 1 cut(s) 18
SacI GAGCTC 2 cut(s) 237, 850
SalI GTCGAC 1 cut(s) 157
SaqAI TTAA 1 cut(s) 828
SatI GCNGC 9 cut(s) 32, 167, 344, 443, 467, 494, 761, 1021, 1046
Sau3AI GATC 5 cut(s) 289, 319, 670, 889, 993
Sau96I GGNCC 2 cut(s) 549, 1014
ScaI AGTACT 1 cut(s) 19
SchI GAGTC 2 cut(s) 563, 601
ScrFI CCNGG 4 cut(s) 163, 184, 447, 507
SduI GDGCHC 2 cut(s) 237, 850
SfaNI GCATC 5 cut(s) 264, 343, 511, 514, 747
SinI GGWCC 2 cut(s) 549, 1014
SmlI CTYRAG 4 cut(s) 170, 294, 335, 755
SmoI CTYRAG 4 cut(s) 170, 294, 335, 755
Sse9I AATT 7 cut(s) 89, 600, 718, 727, 788, 830, 875
SsiI CCGC 8 cut(s) 7, 24, 167, 343, 494, 699, 1018, 1021
SstI GAGCTC 2 cut(s) 237, 850
StyD4I CCNGG 4 cut(s) 161, 182, 445, 505
TaaI ACNGT 2 cut(s) 961, 988
TaiI ACGT 3 cut(s) 158, 208, 383
TaqI TCGA 4 cut(s) 158, 258, 678, 1027
TaqII GACCGA 1 cut(s) 566
TasI AATT 7 cut(s) 89, 600, 718, 727, 788, 830, 875
TatI WGTACW 1 cut(s) 17
TauI GCSGC 4 cut(s) 169, 346, 496, 1023
TfiI GAWTC 1 cut(s) 919
Tru1I TTAA 1 cut(s) 828
Tru9I TTAA 1 cut(s) 828
TscAI CASTG 1 cut(s) 228
TseI GCWGC 5 cut(s) 31, 442, 466, 760, 1045
TspDTI ATGAA 4 cut(s) 607, 697, 722, 792
TspGWI ACGGA 1 cut(s) 680
TspRI CASTG 1 cut(s) 228
Tth111I GACNNNGTC 1 cut(s) 553
VpaK11BI GGWCC 2 cut(s) 549, 1014
XapI RAATTY 4 cut(s) 89, 788, 830, 875
XmiI GTMKAC 1 cut(s) 158
XmnI GAANNNNTTC 1 cut(s) 875
ZrmI AGTACT 1 cut(s) 19
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.