Rh2AG308700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0006385
Physical Location & Seq
Reverse (-)
39175997 .. 39180544
4548 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG308700.1

Sequence Viewer

Length: 1383 bp
ATGGGACTGAGGACAGCCGCGGCAAGATTAGGGTTAGAATTAGCGAGTGCAAGGAAGGATCCGAAGCAGAAATTGATGATGATCAAGAAAATTAGCAGCAGCAGCAGCCTTTCGCAGTTTATGAGAAGATCCAGTAGTTTAGCAAGGGCAGCAGATACATGGGAGAAGAAGGGTATGAAATCGGAATCGGAAATGGAATTGGAATTGAATAAGGAGAAGACTGTATACTTATGTTTCCTTGAGTCGAGTCAATGCGGTGCTGTTGAATACCTGAATCAAGTTATTCGCCCCATCAAATTGAGCCAGGTTAATAGTAATGATGATGCCGATGATGATATTGCCGGGGAGTTGCGCGAAGCAGCTTATAAGAGGTCCAAGGTTAATTTATGGTATTCCAATTGCAGTCGCTTCGGCTCCCAAATTCTTGTCGCCGGCGGCCGTAGAAGGCCCCCGCCAGACGTTATGGGTCCTGCTATTGCCCGTAGAGATATTTATTGGTTTGACACGGCCCAGGGGAAATTCCAGGTTTCCTCCCCAACGAAAACCAAAATCAAGAGCTTCTCAACTGGTAAAGAAACCGTGCTGTTGGGGGAGCTGAACCGCAAACTCTATTGCATCGAGAACGACCCCTTTAGCATGACTCCTCCCTCTCAGCCTTTTCAGGTATTGGACCCCGAAAACGACCTCAAGTGGCGGTCTCTGGAAGCGCCTCCCTTTATCCGCGGCCAGGAGTCGGAGGACTTCACTGCTTCTTTTTTGGAGGGGAGCAACAAAATCTTAGGTTGGGTGTGGCAGCAGCCTGGAGTGTTTTGCTTTGATGACACCAAGCCTGAAAATGGATGGATAGAGTCACCTTCTTGTCTGGGAAACAGCCTTCCCTTTCTTGACCATGGGCATTTCTTCGTCCGCCACCATCATCCCAATCTTGGTGCTTTCAACATAATGTTTCACTATCATCCTGACAATGCACCTCTCCTTGTATCCACCTTTTTCATGCCAGACAACTGTGATTCTTTCCATCCTATCAACAAACCTCTTCAGCTGCCAGAATTGTGTTATGAATTTCGAGAGGATGAGTATGATGACACCTTCTCTACCGATTTTCAATTTGTCCATCTCGGTGCTCAAAAAGTATGCCTTATTTTGCACAAATTCTTCTGCCCATCAACAGGGGAGGTTCAATGTGGAAACATGGGGAGTCTTCTTCTCATAACATTTGAATATGACGTTATTAGTAATACTACTGTCGACTCCAAATCCACCTTGGAGGTCCAGACCCGATTGCTCGGGACCCACCGCCGTCGATACTTTACCAGGCAGCTGCGTAAACCAGATTATACATGGACCAACATATCATACCTGACTGGTGCATTTCTGATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

460

Amino Acids

52.47

Weight (kDa)

6.61

Isoelectric Point (pI)

48.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 366
AccI GTMKAC 2 cut(s) 225, 1248
AccII CGCG 3 cut(s) 20, 354, 723
AclWI GGATC 3 cut(s) 53, 66, 123
AcoI YGGCCR 2 cut(s) 436, 724
AcsI RAATTY 4 cut(s) 420, 518, 1061, 1151
AcuI CTGAAG 1 cut(s) 1022
AfiI CCNNNNNNNGG 5 cut(s) 727, 733, 836, 926, 1169
AgsI TTSAA 6 cut(s) 208, 266, 937, 1106, 1181, 1220
AjnI CCWGG 6 cut(s) 303, 510, 522, 726, 799, 1313
AluBI AGCT 5 cut(s) 362, 558, 595, 1042, 1321
AluI AGCT 5 cut(s) 362, 558, 595, 1042, 1321
Alw21I GWGCWC 1 cut(s) 1126
Alw26I GTCTC 1 cut(s) 702
AlwI GGATC 3 cut(s) 53, 66, 123
Ama87I CYCGRG 1 cut(s) 1286
AoxI GGCC 4 cut(s) 436, 446, 507, 724
ApoI RAATTY 4 cut(s) 420, 518, 1061, 1151
AspLEI GCGC 2 cut(s) 354, 709
AspS9I GGNCC 8 cut(s) 372, 447, 467, 508, 670, 1270, 1290, 1344
AsuC2I CCSGG 1 cut(s) 343
AsuHPI GGTGA 1 cut(s) 843
AvaI CYCGRG 1 cut(s) 1286
AvaII GGWCC 6 cut(s) 372, 467, 670, 1270, 1290, 1344
BamHI GGATCC 1 cut(s) 58
BarI GAAGNNNNNNTAC 2 cut(s) 209, 241
BbsI GAAGAC 2 cut(s) 224, 1193
Bbv12I GWGCWC 1 cut(s) 1126
BccI CCATC 6 cut(s) 299, 834, 921, 1026, 1122, 1171
BceAI ACGGC 3 cut(s) 423, 522, 1284
BcgI CGANNNNNNTGC 2 cut(s) 391, 425
BciT130I CCWGG 6 cut(s) 305, 512, 524, 728, 801, 1315
BciVI GTATCC 1 cut(s) 991
BclI TGATCA 1 cut(s) 81
BcnI CCSGG 1 cut(s) 343
BcoDI GTCTC 1 cut(s) 702
BfoI RGCGCY 1 cut(s) 710
BfuI GTATCC 1 cut(s) 991
Bme1390I CCNGG 7 cut(s) 305, 343, 512, 524, 728, 801, 1315
Bme18I GGWCC 6 cut(s) 372, 467, 670, 1270, 1290, 1344
BmeT110I CYCGRG 1 cut(s) 1286
BmgT120I GGNCC 8 cut(s) 372, 447, 467, 508, 670, 1270, 1290, 1344
BmiI GGNNCC 7 cut(s) 60, 415, 449, 468, 672, 1291, 1292
BmrFI CCNGG 7 cut(s) 305, 343, 512, 524, 728, 801, 1315
BmsI GCATC 2 cut(s) 313, 624
BpiI GAAGAC 2 cut(s) 224, 1193
BpmI CTGGAG 1 cut(s) 822
BpuEI CTTGAG 2 cut(s) 260, 671
BpuMI CCSGG 1 cut(s) 343
BsaBI GATNNNNATC 1 cut(s) 80
BsaI GGTCTC 1 cut(s) 702
BsaJI CCNNGG 8 cut(s) 18, 342, 375, 510, 511, 721, 889, 1263
Bsc4I CCNNNNNNNGG 5 cut(s) 727, 733, 836, 926, 1169
Bse118I RCCGGY 1 cut(s) 431
Bse1I ACTGG 3 cut(s) 132, 571, 1369
Bse8I GATNNNNATC 1 cut(s) 80
BseBI CCWGG 6 cut(s) 305, 512, 524, 728, 801, 1315
BseDI CCNNGG 8 cut(s) 18, 342, 375, 510, 511, 721, 889, 1263
BseGI GGATG 5 cut(s) 845, 916, 955, 1018, 1078
BseJI GATNNNNATC 1 cut(s) 80
BseLI CCNNNNNNNGG 5 cut(s) 727, 733, 836, 926, 1169
BseMII CTCAG 1 cut(s) 665
BseNI ACTGG 3 cut(s) 132, 571, 1369
BseRI GAGGAG 1 cut(s) 633
BseX3I CGGCCG 1 cut(s) 436
Bsh1236I CGCG 3 cut(s) 20, 354, 723
Bsh1285I CGRYCG 1 cut(s) 439
BshFI GGCC 4 cut(s) 438, 448, 509, 726
BsiEI CGRYCG 1 cut(s) 439
BsiHKAI GWGCWC 1 cut(s) 1126
BsiHKCI CYCGRG 1 cut(s) 1286
BsiSI CCGG 2 cut(s) 342, 432
BslFI GGGAC 2 cut(s) 18, 1303
BslI CCNNNNNNNGG 5 cut(s) 727, 733, 836, 926, 1169
BsmAI GTCTC 1 cut(s) 702
BsmFI GGGAC 2 cut(s) 18, 1303
BsnI GGCC 4 cut(s) 438, 448, 509, 726
Bso31I GGTCTC 1 cut(s) 702
BsoBI CYCGRG 1 cut(s) 1286
Bsp1286I GDGCHC 1 cut(s) 1126
Bsp143I GATC 4 cut(s) 58, 81, 128, 1377
Bsp19I CCATGG 1 cut(s) 889
BspANI GGCC 4 cut(s) 438, 448, 509, 726
BspCNI CTCAG 1 cut(s) 664
BspFNI CGCG 3 cut(s) 20, 354, 723
BspLI GGNNCC 7 cut(s) 60, 415, 449, 468, 672, 1291, 1292
BspPI GGATC 3 cut(s) 53, 66, 123
BspTNI GGTCTC 1 cut(s) 702
BsrFI RCCGGY 1 cut(s) 431
BsrI ACTGG 3 cut(s) 132, 571, 1369
BssAI RCCGGY 1 cut(s) 431
BssECI CCNNGG 8 cut(s) 18, 342, 375, 510, 511, 721, 889, 1263
BssMI GATC 4 cut(s) 58, 81, 128, 1377
BssNAI GTATAC 1 cut(s) 226
BssT1I CCWWGG 3 cut(s) 375, 889, 1263
Bst1107I GTATAC 1 cut(s) 226
Bst2UI CCWGG 6 cut(s) 305, 512, 524, 728, 801, 1315
Bst4CI ACNGT 4 cut(s) 223, 580, 1007, 1246
Bst6I CTCTTC 1 cut(s) 1041
BstC8I GCNNGC 1 cut(s) 433
BstDEI CTNAG 3 cut(s) 8, 651, 778
BstDSI CCRYGG 3 cut(s) 18, 721, 889
BstF5I GGATG 5 cut(s) 845, 916, 955, 1018, 1078
BstFNI CGCG 3 cut(s) 20, 354, 723
BstH2I RGCGCY 1 cut(s) 710
BstHHI GCGC 2 cut(s) 354, 709
BstKTI GATC 4 cut(s) 61, 84, 131, 1380
BstMAI GTCTC 1 cut(s) 702
BstMBI GATC 4 cut(s) 58, 81, 128, 1377
BstMCI CGRYCG 1 cut(s) 439
BstMWI GCNNNNNNNGC 3 cut(s) 102, 105, 149
BstNI CCWGG 6 cut(s) 305, 512, 524, 728, 801, 1315
BstSCI CCNGG 7 cut(s) 303, 341, 510, 522, 726, 799, 1313
BstUI CGCG 3 cut(s) 20, 354, 723
BstV2I GAAGAC 2 cut(s) 224, 1193
BstX2I RGATCY 2 cut(s) 58, 128
BstYI RGATCY 2 cut(s) 58, 128
BstZ17I GTATAC 1 cut(s) 226
BstZI CGGCCG 1 cut(s) 436
BsuI GTATCC 1 cut(s) 991
BsuRI GGCC 4 cut(s) 438, 448, 509, 726
BtgI CCRYGG 3 cut(s) 18, 721, 889
BtsCI GGATG 5 cut(s) 845, 916, 955, 1018, 1078
BtsI GCAGTG 1 cut(s) 744
BtsIMutI CAGTG 1 cut(s) 744
Cac8I GCNNGC 1 cut(s) 433
CfoI GCGC 2 cut(s) 354, 709
Cfr10I RCCGGY 1 cut(s) 431
Cfr13I GGNCC 8 cut(s) 372, 447, 467, 508, 670, 1270, 1290, 1344
Cfr42I CCGCGG 2 cut(s) 21, 724
CviAII CATG 6 cut(s) 159, 637, 890, 994, 1192, 1341
DdeI CTNAG 3 cut(s) 8, 651, 778
DpnI GATC 4 cut(s) 60, 83, 130, 1379
DpnII GATC 4 cut(s) 58, 81, 128, 1377
EaeI YGGCCR 2 cut(s) 436, 724
EagI CGGCCG 1 cut(s) 436
Eam1104I CTCTTC 1 cut(s) 1041
EarI CTCTTC 1 cut(s) 1041
EciI GGCGGA 1 cut(s) 896
EclXI CGGCCG 1 cut(s) 436
Eco130I CCWWGG 3 cut(s) 375, 889, 1263
Eco31I GGTCTC 1 cut(s) 702
Eco47I GGWCC 6 cut(s) 372, 467, 670, 1270, 1290, 1344
Eco52I CGGCCG 1 cut(s) 436
Eco57I CTGAAG 1 cut(s) 1022
Eco88I CYCGRG 1 cut(s) 1286
EcoO109I RGGNCCY 3 cut(s) 447, 467, 1290
EcoRII CCWGG 6 cut(s) 303, 510, 522, 726, 799, 1313
EcoT14I CCWWGG 3 cut(s) 375, 889, 1263
ErhI CCWWGG 3 cut(s) 375, 889, 1263
FaeI CATG 6 cut(s) 162, 640, 893, 997, 1195, 1344
FalI AAGNNNNNCTT 2 cut(s) 1122, 1154
FaqI GGGAC 2 cut(s) 18, 1303
FatI CATG 6 cut(s) 158, 636, 889, 993, 1191, 1340
FauI CCCGC 1 cut(s) 459
FbaI TGATCA 1 cut(s) 81
FblI GTMKAC 2 cut(s) 225, 1248
FokI GGATG 5 cut(s) 852, 903, 942, 1005, 1085
GlaI GCGC 2 cut(s) 353, 708
GsuI CTGGAG 1 cut(s) 822
HaeII RGCGCY 1 cut(s) 710
HaeIII GGCC 4 cut(s) 438, 448, 509, 726
HapII CCGG 2 cut(s) 342, 432
HhaI GCGC 2 cut(s) 354, 709
Hin1II CATG 6 cut(s) 162, 640, 893, 997, 1195, 1344
Hin6I GCGC 2 cut(s) 352, 707
HinP1I GCGC 2 cut(s) 352, 707
HincII GTYRAC 1 cut(s) 1249
HindII GTYRAC 1 cut(s) 1249
HpaII CCGG 2 cut(s) 342, 432
HphI GGTGA 1 cut(s) 843
Hpy166II GTNNAC 3 cut(s) 226, 1249, 1328
Hpy188I TCNGA 5 cut(s) 63, 184, 190, 736, 1377
Hpy188III TCNNGA 9 cut(s) 85, 553, 619, 701, 884, 959, 1067, 1273, 1288
Hpy8I GTNNAC 3 cut(s) 226, 1249, 1328
Hpy99I CGWCG 1 cut(s) 1305
HpyAV CCTTC 6 cut(s) 49, 163, 438, 864, 884, 1099
HpyCH4III ACNGT 4 cut(s) 223, 580, 1007, 1246
HpyCH4IV ACGT 2 cut(s) 459, 1227
HpyCH4V TGCA 6 cut(s) 50, 402, 615, 968, 1147, 1370
HpyF10VI GCNNNNNNNGC 3 cut(s) 102, 105, 149
HpyF3I CTNAG 3 cut(s) 8, 651, 778
HpySE526I ACGT 2 cut(s) 459, 1227
Hsp92II CATG 6 cut(s) 162, 640, 893, 997, 1195, 1344
HspAI GCGC 2 cut(s) 352, 707
KflI GGGWCCC 1 cut(s) 1290
KroI GCCGGC 1 cut(s) 431
KroNI GCCGGC 1 cut(s) 433
Ksp22I TGATCA 1 cut(s) 81
KspI CCGCGG 2 cut(s) 21, 724
Kzo9I GATC 4 cut(s) 58, 81, 128, 1377
LmnI GCTCC 3 cut(s) 419, 592, 765
LweI GCATC 2 cut(s) 313, 624
MaeII ACGT 2 cut(s) 459, 1227
MaeIII GTNAC 1 cut(s) 849
MalI GATC 4 cut(s) 60, 83, 130, 1379
MboI GATC 4 cut(s) 58, 81, 128, 1377
MboII GAAGA 8 cut(s) 138, 178, 229, 892, 1028, 1147, 1193, 1196
MfeI CAATTG 1 cut(s) 397
MflI RGATCY 2 cut(s) 58, 128
MhlI GDGCHC 1 cut(s) 1126
MlyI GAGTC 7 cut(s) 251, 256, 634, 740, 857, 1207, 1244
MmeI TCCRAC 1 cut(s) 714
MreI CGCCGGCG 1 cut(s) 431
MroNI GCCGGC 1 cut(s) 431
MseI TTAA 2 cut(s) 309, 381
MslI CAYNNNNRTG 1 cut(s) 1119
MspA1I CMGCKG 4 cut(s) 20, 723, 1042, 1321
MspI CCGG 2 cut(s) 342, 432
MspR9I CCNGG 7 cut(s) 305, 343, 512, 524, 728, 801, 1315
MunI CAATTG 1 cut(s) 397
MvaI CCWGG 6 cut(s) 305, 512, 524, 728, 801, 1315
MvnI CGCG 3 cut(s) 20, 354, 723
MwoI GCNNNNNNNGC 3 cut(s) 102, 105, 149
NaeI GCCGGC 1 cut(s) 433
NciI CCSGG 1 cut(s) 343
NcoI CCATGG 1 cut(s) 889
NdeII GATC 4 cut(s) 58, 81, 128, 1377
NgoMIV GCCGGC 1 cut(s) 431
NlaIII CATG 6 cut(s) 162, 640, 893, 997, 1195, 1344
NlaIV GGNNCC 7 cut(s) 60, 415, 449, 468, 672, 1291, 1292
NmuCI GTSAC 1 cut(s) 849
PasI CCCWGGG 1 cut(s) 511
PdiI GCCGGC 1 cut(s) 433
PfeI GAWTC 3 cut(s) 185, 274, 1010
PleI GAGTC 7 cut(s) 250, 255, 634, 739, 856, 1206, 1244
PpsI GAGTC 7 cut(s) 250, 255, 634, 739, 856, 1206, 1244
PpuMI RGGWCCY 2 cut(s) 467, 1290
PsiI TTATAA 1 cut(s) 366
Psp5II RGGWCCY 2 cut(s) 467, 1290
Psp6I CCWGG 6 cut(s) 303, 510, 522, 726, 799, 1313
PspGI CCWGG 6 cut(s) 303, 510, 522, 726, 799, 1313
PspN4I GGNNCC 7 cut(s) 60, 415, 449, 468, 672, 1291, 1292
PspPI GGNCC 8 cut(s) 372, 447, 467, 508, 670, 1270, 1290, 1344
PspPPI RGGWCCY 2 cut(s) 467, 1290
PsuI RGATCY 2 cut(s) 58, 128
PvuII CAGCTG 2 cut(s) 1042, 1321
RseI CAYNNNNRTG 1 cut(s) 1119
SacII CCGCGG 2 cut(s) 21, 724
SalI GTCGAC 1 cut(s) 1247
SaqAI TTAA 2 cut(s) 309, 381
Sau3AI GATC 4 cut(s) 58, 81, 128, 1377
Sau96I GGNCC 8 cut(s) 372, 447, 467, 508, 670, 1270, 1290, 1344
SchI GAGTC 7 cut(s) 251, 256, 634, 740, 857, 1207, 1244
ScrFI CCNGG 7 cut(s) 305, 343, 512, 524, 728, 801, 1315
SduI GDGCHC 1 cut(s) 1126
SfaNI GCATC 2 cut(s) 313, 624
Sfr303I CCGCGG 2 cut(s) 21, 724
SgrAI CRCCGGYG 1 cut(s) 431
SgrBI CCGCGG 2 cut(s) 21, 724
SinI GGWCC 6 cut(s) 372, 467, 670, 1270, 1290, 1344
SmiMI CAYNNNNRTG 1 cut(s) 1119
SmlI CTYRAG 2 cut(s) 239, 686
SmoI CTYRAG 2 cut(s) 239, 686
StyD4I CCNGG 7 cut(s) 303, 341, 510, 522, 726, 799, 1313
StyI CCWWGG 3 cut(s) 375, 889, 1263
TaaI ACNGT 4 cut(s) 223, 580, 1007, 1246
TaiI ACGT 2 cut(s) 462, 1230
TaqI TCGA 5 cut(s) 245, 618, 1066, 1248, 1303
TauI GCSGC 4 cut(s) 20, 23, 438, 726
TfiI GAWTC 3 cut(s) 185, 274, 1010
Tru1I TTAA 2 cut(s) 309, 381
Tru9I TTAA 2 cut(s) 309, 381
TscAI CASTG 1 cut(s) 751
TseFI GTSAC 1 cut(s) 849
Tsp45I GTSAC 1 cut(s) 849
TspDTI ATGAA 3 cut(s) 191, 982, 1074
TspRI CASTG 1 cut(s) 751
VpaK11BI GGWCC 6 cut(s) 372, 467, 670, 1270, 1290, 1344
XapI RAATTY 4 cut(s) 420, 518, 1061, 1151
XcmI CCANNNNNNNNNTGG 2 cut(s) 1261, 1338
XmiI GTMKAC 2 cut(s) 225, 1248
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.