Rh2DG247400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0006385
Physical Location & Seq
Reverse (-)
25415329 .. 25415967
639 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG247400.1

Sequence Viewer

Length: 639 bp
ATGTTATTAGTAATGATGATGCTGATGATATTGCCGTGGAGTTGCGCGAGGCAGCTTATAAGAGGTCCAAGGTTAATTTATGGTATTCCAATTACAGTCGCTTCGGCTCCAAAATTCTTGTCCCCGGCCGGCGGCTGTAGAAGGCCCCCGCCAGAAGTTGTGGGTCCCGCTATTAACCGTACAGATATTTATTGGTTTGACACGACCCAGGGGAAATTCGAGGTTTCCTCCCCAACGAAAACCAAAATCAAGAGCTTCTCAACAAGTAAACAATGCGTGCTGTTGGGGGAGCTGAACCGCAAACTCTATTGCATCGACAACGACCCCTTTAGCATGACTCCTCCCTCTCAGCCTTTTCAGGTATTGGACCCCGAAAACGACCTCAAGTGGCGGTCACTGGAAGCGCCTCCCTTTATCCGCGGCAGAGAGTCGGAGGACTTCACTGCGTGTTTTTTGGAGGGGAGCAACAAAATCTTAGGTTGGGTGTGGCATCAGCCTGGAGTGTTTTGCTTTGATGACACCAAGCCCGATAATGGATGGATAGAGTCACTTCTTGTCTGGGAAACAGCCTTCCCTTTCTTGACTATGGGTCTTTCTTCGTCCGCCACCATCATCCCAATCTTGGTGCTTTCAACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

212

Amino Acids

23.82

Weight (kDa)

6.58

Isoelectric Point (pI)

48.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 59
AccII CGCG 2 cut(s) 47, 420
AciI CCGC 8 cut(s) 132, 149, 168, 298, 391, 418, 420, 603
AcoI YGGCCR 1 cut(s) 126
AcsI RAATTY 2 cut(s) 113, 215
AdeI CACNNNGTG 1 cut(s) 447
AfaI GTAC 1 cut(s) 181
AfiI CCNNNNNNNGG 3 cut(s) 131, 533, 622
AgsI TTSAA 1 cut(s) 633
AhdI GACNNNNNGTC 1 cut(s) 588
AjnI CCWGG 2 cut(s) 207, 496
AluBI AGCT 3 cut(s) 55, 255, 292
AluI AGCT 3 cut(s) 55, 255, 292
AoxI GGCC 2 cut(s) 126, 143
ApeKI GCWGC 1 cut(s) 52
ApoI RAATTY 2 cut(s) 113, 215
ArsI GACNNNNNNTTYG 2 cut(s) 104, 136
AspLEI GCGC 2 cut(s) 47, 406
AspS9I GGNCC 4 cut(s) 65, 144, 164, 367
AsuC2I CCSGG 1 cut(s) 125
AvaII GGWCC 3 cut(s) 65, 164, 367
BbvI GCAGC 1 cut(s) 64
BccI CCATC 2 cut(s) 531, 617
BceAI ACGGC 1 cut(s) 19
BciT130I CCWGG 2 cut(s) 209, 498
BcnI CCSGG 1 cut(s) 125
BfmI CTRYAG 1 cut(s) 136
BfoI RGCGCY 1 cut(s) 407
BisI GCNGC 3 cut(s) 53, 133, 421
BlsI GCNGC 3 cut(s) 54, 134, 422
Bme1390I CCNGG 3 cut(s) 125, 209, 498
Bme18I GGWCC 3 cut(s) 65, 164, 367
BmeRI GACNNNNNGTC 1 cut(s) 588
BmgT120I GGNCC 4 cut(s) 65, 144, 164, 367
BmiI GGNNCC 5 cut(s) 108, 146, 165, 166, 369
BmrFI CCNGG 3 cut(s) 125, 209, 498
BmsI GCATC 3 cut(s) 9, 321, 499
BplI GAGNNNNNCTC 2 cut(s) 212, 244
BpmI CTGGAG 1 cut(s) 519
BpuEI CTTGAG 1 cut(s) 368
BpuMI CCSGG 1 cut(s) 125
BsaJI CCNNGG 6 cut(s) 35, 68, 123, 207, 208, 418
Bsc4I CCNNNNNNNGG 3 cut(s) 131, 533, 622
Bse118I RCCGGY 1 cut(s) 128
Bse1I ACTGG 1 cut(s) 402
BseBI CCWGG 2 cut(s) 209, 498
BseDI CCNNGG 6 cut(s) 35, 68, 123, 207, 208, 418
BseGI GGATG 2 cut(s) 542, 612
BseLI CCNNNNNNNGG 3 cut(s) 131, 533, 622
BseMII CTCAG 1 cut(s) 362
BseNI ACTGG 1 cut(s) 402
BseRI GAGGAG 1 cut(s) 330
BseX3I CGGCCG 1 cut(s) 126
BseXI GCAGC 1 cut(s) 64
Bsh1236I CGCG 2 cut(s) 47, 420
Bsh1285I CGRYCG 1 cut(s) 129
BshFI GGCC 2 cut(s) 128, 145
BsiEI CGRYCG 1 cut(s) 129
BsiSI CCGG 2 cut(s) 125, 129
BslFI GGGAC 2 cut(s) 106, 150
BslI CCNNNNNNNGG 3 cut(s) 131, 533, 622
BsmFI GGGAC 2 cut(s) 106, 150
BsnI GGCC 2 cut(s) 128, 145
BspACI CCGC 8 cut(s) 132, 149, 168, 298, 391, 418, 420, 603
BspANI GGCC 2 cut(s) 128, 145
BspCNI CTCAG 1 cut(s) 361
BspFNI CGCG 2 cut(s) 47, 420
BspLI GGNNCC 5 cut(s) 108, 146, 165, 166, 369
BsrFI RCCGGY 1 cut(s) 128
BsrI ACTGG 1 cut(s) 402
BssAI RCCGGY 1 cut(s) 128
BssECI CCNNGG 6 cut(s) 35, 68, 123, 207, 208, 418
BssT1I CCWWGG 1 cut(s) 68
Bst2UI CCWGG 2 cut(s) 209, 498
Bst4CI ACNGT 2 cut(s) 97, 179
BstC8I GCNNGC 2 cut(s) 130, 278
BstDEI CTNAG 2 cut(s) 348, 475
BstDSI CCRYGG 2 cut(s) 35, 418
BstF5I GGATG 2 cut(s) 542, 612
BstFNI CGCG 2 cut(s) 47, 420
BstH2I RGCGCY 1 cut(s) 407
BstHHI GCGC 2 cut(s) 47, 406
BstMCI CGRYCG 1 cut(s) 129
BstNI CCWGG 2 cut(s) 209, 498
BstSCI CCNGG 3 cut(s) 123, 207, 496
BstSFI CTRYAG 1 cut(s) 136
BstUI CGCG 2 cut(s) 47, 420
BstV1I GCAGC 1 cut(s) 64
BstZI CGGCCG 1 cut(s) 126
BsuRI GGCC 2 cut(s) 128, 145
BtgI CCRYGG 2 cut(s) 35, 418
BtsCI GGATG 2 cut(s) 542, 612
BtsI GCAGTG 1 cut(s) 441
BtsIMutI CAGTG 2 cut(s) 395, 441
Cac8I GCNNGC 2 cut(s) 130, 278
CfoI GCGC 2 cut(s) 47, 406
Cfr10I RCCGGY 1 cut(s) 128
Cfr13I GGNCC 4 cut(s) 65, 144, 164, 367
Cfr42I CCGCGG 1 cut(s) 421
Csp6I GTAC 1 cut(s) 180
CviAII CATG 1 cut(s) 334
CviQI GTAC 1 cut(s) 180
DdeI CTNAG 2 cut(s) 348, 475
DraIII CACNNNGTG 1 cut(s) 447
DriI GACNNNNNGTC 1 cut(s) 588
EaeI YGGCCR 1 cut(s) 126
EagI CGGCCG 1 cut(s) 126
Eam1105I GACNNNNNGTC 1 cut(s) 588
EciI GGCGGA 1 cut(s) 592
EclXI CGGCCG 1 cut(s) 126
Eco130I CCWWGG 1 cut(s) 68
Eco47I GGWCC 3 cut(s) 65, 164, 367
Eco52I CGGCCG 1 cut(s) 126
EcoO109I RGGNCCY 2 cut(s) 144, 164
EcoRII CCWGG 2 cut(s) 207, 496
EcoT14I CCWWGG 1 cut(s) 68
ErhI CCWWGG 1 cut(s) 68
FaeI CATG 1 cut(s) 337
FaiI YATR 4 cut(s) 59, 81, 335, 587
FaqI GGGAC 2 cut(s) 106, 150
FatI CATG 1 cut(s) 333
FauI CCCGC 2 cut(s) 156, 175
Fnu4HI GCNGC 3 cut(s) 53, 133, 421
FokI GGATG 2 cut(s) 549, 599
Fsp4HI GCNGC 3 cut(s) 53, 133, 421
GlaI GCGC 2 cut(s) 46, 405
GluI GCNGC 3 cut(s) 53, 133, 421
GsuI CTGGAG 1 cut(s) 519
HaeII RGCGCY 1 cut(s) 407
HaeIII GGCC 2 cut(s) 128, 145
HapII CCGG 2 cut(s) 125, 129
HhaI GCGC 2 cut(s) 47, 406
Hin1II CATG 1 cut(s) 337
Hin6I GCGC 2 cut(s) 45, 404
HinP1I GCGC 2 cut(s) 45, 404
HinfI GANTC 3 cut(s) 337, 428, 545
HpaII CCGG 2 cut(s) 125, 129
Hpy166II GTNNAC 1 cut(s) 269
Hpy188I TCNGA 1 cut(s) 433
Hpy188III TCNNGA 2 cut(s) 250, 580
Hpy8I GTNNAC 1 cut(s) 269
HpyAV CCTTC 2 cut(s) 135, 580
HpyCH4III ACNGT 2 cut(s) 97, 179
HpyCH4V TGCA 1 cut(s) 312
HpyF3I CTNAG 2 cut(s) 348, 475
Hsp92II CATG 1 cut(s) 337
HspAI GCGC 2 cut(s) 45, 404
KflI GGGWCCC 1 cut(s) 164
KroI GCCGGC 1 cut(s) 128
KroNI GCCGGC 1 cut(s) 130
KspI CCGCGG 1 cut(s) 421
LmnI GCTCC 3 cut(s) 112, 289, 462
Lsp1109I GCAGC 1 cut(s) 64
LweI GCATC 3 cut(s) 9, 321, 499
MaeIII GTNAC 2 cut(s) 393, 546
MboII GAAGA 1 cut(s) 588
MluCI AATT 4 cut(s) 75, 90, 113, 215
MlyI GAGTC 3 cut(s) 331, 437, 554
MmeI TCCRAC 1 cut(s) 411
MroNI GCCGGC 1 cut(s) 128
MseI TTAA 3 cut(s) 74, 174, 637
MspA1I CMGCKG 1 cut(s) 420
MspI CCGG 2 cut(s) 125, 129
MspR9I CCNGG 3 cut(s) 125, 209, 498
MvaI CCWGG 2 cut(s) 209, 498
MvnI CGCG 2 cut(s) 47, 420
NaeI GCCGGC 1 cut(s) 130
NciI CCSGG 1 cut(s) 125
NgoMIV GCCGGC 1 cut(s) 128
NlaIII CATG 1 cut(s) 337
NlaIV GGNNCC 5 cut(s) 108, 146, 165, 166, 369
NmuCI GTSAC 2 cut(s) 393, 546
PasI CCCWGGG 1 cut(s) 208
PdiI GCCGGC 1 cut(s) 130
PkrI GCNGC 3 cut(s) 54, 134, 422
PleI GAGTC 3 cut(s) 331, 436, 553
PpsI GAGTC 3 cut(s) 331, 436, 553
PpuMI RGGWCCY 1 cut(s) 164
PsiI TTATAA 1 cut(s) 59
Psp5II RGGWCCY 1 cut(s) 164
Psp6I CCWGG 2 cut(s) 207, 496
PspGI CCWGG 2 cut(s) 207, 496
PspN4I GGNNCC 5 cut(s) 108, 146, 165, 166, 369
PspPI GGNCC 4 cut(s) 65, 144, 164, 367
PspPPI RGGWCCY 1 cut(s) 164
RsaI GTAC 1 cut(s) 181
RsaNI GTAC 1 cut(s) 180
SacII CCGCGG 1 cut(s) 421
SaqAI TTAA 3 cut(s) 74, 174, 637
SatI GCNGC 3 cut(s) 53, 133, 421
Sau96I GGNCC 4 cut(s) 65, 144, 164, 367
SchI GAGTC 3 cut(s) 331, 437, 554
ScrFI CCNGG 3 cut(s) 125, 209, 498
SetI ASST 9 cut(s) 57, 67, 74, 225, 257, 294, 363, 384, 481
SfaNI GCATC 3 cut(s) 9, 321, 499
SfcI CTRYAG 1 cut(s) 136
Sfr303I CCGCGG 1 cut(s) 421
SgrBI CCGCGG 1 cut(s) 421
SinI GGWCC 3 cut(s) 65, 164, 367
SmlI CTYRAG 1 cut(s) 383
SmoI CTYRAG 1 cut(s) 383
Sse9I AATT 4 cut(s) 75, 90, 113, 215
SsiI CCGC 8 cut(s) 132, 149, 168, 298, 391, 418, 420, 603
StyD4I CCNGG 3 cut(s) 123, 207, 496
StyI CCWWGG 1 cut(s) 68
TaaI ACNGT 2 cut(s) 97, 179
TaqI TCGA 2 cut(s) 219, 315
TasI AATT 4 cut(s) 75, 90, 113, 215
TauI GCSGC 2 cut(s) 135, 423
Tru1I TTAA 3 cut(s) 74, 174, 637
Tru9I TTAA 3 cut(s) 74, 174, 637
TscAI CASTG 2 cut(s) 402, 448
TseFI GTSAC 2 cut(s) 393, 546
TseI GCWGC 1 cut(s) 52
Tsp45I GTSAC 2 cut(s) 393, 546
TspRI CASTG 2 cut(s) 402, 448
VpaK11BI GGWCC 3 cut(s) 65, 164, 367
XapI RAATTY 2 cut(s) 113, 215
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.