Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0006385

Physical Location & Seq

Genomic Coordinates Reverse (-)

26103021 .. 26103410

Gene Structure 390 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG252900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ATGCCAAACAACTGTGATTCTTTCCATCCTATCAACAAACCTCTTCAGCTGCCAAAATTGTGTTATGAATTTCGAGGGGATGAGTATGATGACACCGTCTCTACCGATTTTCAATTTGTCCATCTCGGAGCTCAAAAAGTCTGCCTTGTTTTGCACAAATTCTTCTACCCATCAACAAGGAAGGCTCAATGTGGAAACATGGGGAGTCTTCTTCTCATAACATTTGAATATGACATCATTAGTAATACTACTGTCGACTCCAAATCCACCTTGGAGATCCAGACCCGATTGCTCGGGACCCACCGCCGTCGATACTTTACCAGGCAGCTGCGTAAGCCAGATGATACATGGACCAACACAGCATGCCTGACTGGTGCATTTCTGATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

129

Amino Acids

14.93

Weight (kDa)

8.3

Isoelectric Point (pI)

36.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006385)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g10590 FvH4_7g04900 FvH4_7g04900 FvH4_7g06271
rosa_chinensis	RchiOBHm_Chr2g0124211
rosa_laevigata	RLG00000018039 RLG00000018795 RLG00000022953
rosa_multiflora	Rmu_sc0002968.1_g000024 Rmu_sc0005472.1_g000005 Rmu_sc0005949.1_g000011 Rmu_sc0018337.1_g000004
rosa_roxburghii	Rroxscaffold_2G00120080
rosa_rugosa	Rorug02G0249000
rosa_samantha	Rh2AG239400 Rh2AG308700 Rh2BG252900 Rh2BG253000 Rh2BG253300 Rh2BG317700 Rh2CG243500 Rh2CG295800 Rh2DG247300 Rh2DG247400 Rh2DG332700 Rh5CG553900
rosa_wichuraiana	Rw2G018750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	255
AciI	CCGC	1 cut(s)	304
AclWI	GGATC	1 cut(s)	271
AcsI	RAATTY	2 cut(s)	68, 158
AcuI	CTGAAG	1 cut(s)	29
AgsI	TTSAA	2 cut(s)	113, 227
AjnI	CCWGG	1 cut(s)	320
AluBI	AGCT	3 cut(s)	49, 131, 328
AluI	AGCT	3 cut(s)	49, 131, 328
Alw21I	GWGCWC	1 cut(s)	133
Alw26I	GTCTC	1 cut(s)	103
AlwI	GGATC	1 cut(s)	271
Ama87I	CYCGRG	1 cut(s)	293
ApeKI	GCWGC	3 cut(s)	49, 325, 328
ApoI	RAATTY	2 cut(s)	68, 158
AspS9I	GGNCC	2 cut(s)	297, 351
AvaI	CYCGRG	1 cut(s)	293
AvaII	GGWCC	2 cut(s)	297, 351
BanII	GRGCYC	1 cut(s)	133
BbsI	GAAGAC	1 cut(s)	200
Bbv12I	GWGCWC	1 cut(s)	133
BbvI	GCAGC	3 cut(s)	36, 315, 337
BccI	CCATC	3 cut(s)	33, 129, 178
BceAI	ACGGC	1 cut(s)	291
BciT130I	CCWGG	1 cut(s)	322
BcoDI	GTCTC	1 cut(s)	103
BisI	GCNGC	3 cut(s)	50, 326, 329
BlsI	GCNGC	3 cut(s)	51, 327, 330
Bme1390I	CCNGG	1 cut(s)	322
Bme18I	GGWCC	2 cut(s)	297, 351
BmeT110I	CYCGRG	1 cut(s)	293
BmgT120I	GGNCC	2 cut(s)	297, 351
BmiI	GGNNCC	2 cut(s)	298, 299
BmrFI	CCNGG	1 cut(s)	322
BpiI	GAAGAC	1 cut(s)	200
BsaJI	CCNNGG	1 cut(s)	270
Bse1I	ACTGG	1 cut(s)	376
BseBI	CCWGG	1 cut(s)	322
BseDI	CCNNGG	1 cut(s)	270
BseGI	GGATG	2 cut(s)	25, 85
BseNI	ACTGG	1 cut(s)	376
BseXI	GCAGC	3 cut(s)	36, 315, 337
BsiHKAI	GWGCWC	1 cut(s)	133
BsiHKCI	CYCGRG	1 cut(s)	293
BslFI	GGGAC	1 cut(s)	310
BsmAI	GTCTC	1 cut(s)	103
BsmBI	CGTCTC	1 cut(s)	103
BsmFI	GGGAC	1 cut(s)	310
BsoBI	CYCGRG	1 cut(s)	293
Bsp1286I	GDGCHC	1 cut(s)	133
Bsp143I	GATC	2 cut(s)	276, 384
BspACI	CCGC	1 cut(s)	304
BspLI	GGNNCC	2 cut(s)	298, 299
BspPI	GGATC	1 cut(s)	271
BsrI	ACTGG	1 cut(s)	376
BssECI	CCNNGG	1 cut(s)	270
BssMI	GATC	2 cut(s)	276, 384
BssT1I	CCWWGG	1 cut(s)	270
Bst2UI	CCWGG	1 cut(s)	322
Bst4CI	ACNGT	3 cut(s)	14, 97, 253
Bst6I	CTCTTC	1 cut(s)	48
BstC8I	GCNNGC	1 cut(s)	364
BstF5I	GGATG	2 cut(s)	25, 85
BstKTI	GATC	2 cut(s)	279, 387
BstMAI	GTCTC	1 cut(s)	103
BstMBI	GATC	2 cut(s)	276, 384
BstMWI	GCNNNNNNNGC	1 cut(s)	334
BstNI	CCWGG	1 cut(s)	322
BstNSI	RCATGY	1 cut(s)	366
BstSCI	CCNGG	1 cut(s)	320
BstV1I	GCAGC	3 cut(s)	36, 315, 337
BstV2I	GAAGAC	1 cut(s)	200
BstX2I	RGATCY	1 cut(s)	276
BstYI	RGATCY	1 cut(s)	276
BtsCI	GGATG	2 cut(s)	25, 85
Cac8I	GCNNGC	1 cut(s)	364
Cfr13I	GGNCC	2 cut(s)	297, 351
CviAII	CATG	3 cut(s)	199, 348, 363
CviJI	RGCY	5 cut(s)	49, 131, 185, 328, 337
CviKI_1	RGCY	5 cut(s)	49, 131, 185, 328, 337
DpnI	GATC	2 cut(s)	278, 386
DpnII	GATC	2 cut(s)	276, 384
Eam1104I	CTCTTC	1 cut(s)	48
EarI	CTCTTC	1 cut(s)	48
Ecl136II	GAGCTC	1 cut(s)	131
Eco130I	CCWWGG	1 cut(s)	270
Eco24I	GRGCYC	1 cut(s)	133
Eco47I	GGWCC	2 cut(s)	297, 351
Eco53kI	GAGCTC	1 cut(s)	131
Eco57I	CTGAAG	1 cut(s)	29
Eco88I	CYCGRG	1 cut(s)	293
EcoICRI	GAGCTC	1 cut(s)	131
EcoO109I	RGGNCCY	1 cut(s)	297
EcoRII	CCWGG	1 cut(s)	320
EcoT14I	CCWWGG	1 cut(s)	270
EcoT38I	GRGCYC	1 cut(s)	133
ErhI	CCWWGG	1 cut(s)	270
Esp3I	CGTCTC	1 cut(s)	103
FaeI	CATG	3 cut(s)	202, 351, 366
FaiI	YATR	7 cut(s)	66, 87, 200, 218, 231, 349, 364
FalI	AAGNNNNNCTT	2 cut(s)	129, 161
FaqI	GGGAC	1 cut(s)	310
FatI	CATG	3 cut(s)	198, 347, 362
FblI	GTMKAC	1 cut(s)	255
Fnu4HI	GCNGC	3 cut(s)	50, 326, 329
FokI	GGATG	2 cut(s)	12, 92
FriOI	GRGCYC	1 cut(s)	133
Fsp4HI	GCNGC	3 cut(s)	50, 326, 329
GluI	GCNGC	3 cut(s)	50, 326, 329
Hin1II	CATG	3 cut(s)	202, 351, 366
HincII	GTYRAC	1 cut(s)	256
HindII	GTYRAC	1 cut(s)	256
HinfI	GANTC	3 cut(s)	17, 205, 257
Hpy166II	GTNNAC	1 cut(s)	256
Hpy188I	TCNGA	2 cut(s)	128, 384
Hpy188III	TCNNGA	2 cut(s)	280, 295
Hpy8I	GTNNAC	1 cut(s)	256
Hpy99I	CGWCG	1 cut(s)	312
HpyAV	CCTTC	1 cut(s)	175
HpyCH4III	ACNGT	3 cut(s)	14, 97, 253
HpyCH4V	TGCA	2 cut(s)	154, 377
HpyF10VI	GCNNNNNNNGC	1 cut(s)	334
Hsp92II	CATG	3 cut(s)	202, 351, 366
KflI	GGGWCCC	1 cut(s)	297
Kzo9I	GATC	2 cut(s)	276, 384
LmnI	GCTCC	1 cut(s)	128
LpnPI	CCDG	6 cut(s)	293, 307, 334, 351, 357, 380
Lsp1109I	GCAGC	3 cut(s)	36, 315, 337
MalI	GATC	2 cut(s)	278, 386
MboI	GATC	2 cut(s)	276, 384
MboII	GAAGA	4 cut(s)	35, 154, 200, 203
MflI	RGATCY	1 cut(s)	276
MhlI	GDGCHC	1 cut(s)	133
MluCI	AATT	4 cut(s)	56, 68, 113, 158
MlyI	GAGTC	2 cut(s)	214, 251
MnlI	CCTC	2 cut(s)	51, 68
MspA1I	CMGCKG	2 cut(s)	49, 328
MspR9I	CCNGG	1 cut(s)	322
MvaI	CCWGG	1 cut(s)	322
MwoI	GCNNNNNNNGC	1 cut(s)	334
NdeII	GATC	2 cut(s)	276, 384
NlaIII	CATG	3 cut(s)	202, 351, 366
NlaIV	GGNNCC	2 cut(s)	298, 299
NspI	RCATGY	1 cut(s)	366
PaeI	GCATGC	1 cut(s)	366
PfeI	GAWTC	1 cut(s)	17
PflFI	GACNNNGTC	1 cut(s)	95
PkrI	GCNGC	3 cut(s)	51, 327, 330
PleI	GAGTC	2 cut(s)	213, 251
PpsI	GAGTC	2 cut(s)	213, 251
PpuMI	RGGWCCY	1 cut(s)	297
Psp124BI	GAGCTC	1 cut(s)	133
Psp5II	RGGWCCY	1 cut(s)	297
Psp6I	CCWGG	1 cut(s)	320
PspGI	CCWGG	1 cut(s)	320
PspN4I	GGNNCC	2 cut(s)	298, 299
PspPI	GGNCC	2 cut(s)	297, 351
PspPPI	RGGWCCY	1 cut(s)	297
PsuI	RGATCY	1 cut(s)	276
PsyI	GACNNNGTC	1 cut(s)	95
PvuII	CAGCTG	2 cut(s)	49, 328
SacI	GAGCTC	1 cut(s)	133
SalI	GTCGAC	1 cut(s)	254
SatI	GCNGC	3 cut(s)	50, 326, 329
Sau3AI	GATC	2 cut(s)	276, 384
Sau96I	GGNCC	2 cut(s)	297, 351
SchI	GAGTC	2 cut(s)	214, 251
ScrFI	CCNGG	1 cut(s)	322
SduI	GDGCHC	1 cut(s)	133
SetI	ASST	5 cut(s)	43, 51, 133, 272, 330
SinI	GGWCC	2 cut(s)	297, 351
SphI	GCATGC	1 cut(s)	366
Sse9I	AATT	4 cut(s)	56, 68, 113, 158
SsiI	CCGC	1 cut(s)	304
SstI	GAGCTC	1 cut(s)	133
StyD4I	CCNGG	1 cut(s)	320
StyI	CCWWGG	1 cut(s)	270
TaaI	ACNGT	3 cut(s)	14, 97, 253
TaqI	TCGA	3 cut(s)	73, 255, 310
TasI	AATT	4 cut(s)	56, 68, 113, 158
TfiI	GAWTC	1 cut(s)	17
TseI	GCWGC	3 cut(s)	49, 325, 328
TspDTI	ATGAA	1 cut(s)	81
Tth111I	GACNNNGTC	1 cut(s)	95
VpaK11BI	GGWCC	2 cut(s)	297, 351
XapI	RAATTY	2 cut(s)	68, 158
XceI	RCATGY	1 cut(s)	366
XcmI	CCANNNNNNNNNTGG	2 cut(s)	268, 345
XmiI	GTMKAC	1 cut(s)	255

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.