Rh2DG247300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0006385
Physical Location & Seq
Reverse (-)
25414494 .. 25415080
587 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG247300.1

Sequence Viewer

Length: 258 bp
ATGGGGAGTCTTCTTCTCATAACATTTGAATATGACATTATTAGTAATACTACTGTCGATTCCAAATCCACCTTGGAGATCCAGACCCGATTGCTCGGGACCCACCGCCGTCGATACTTCACCAGGCAGCTGCGTAAACCAGATGATACATGGACCAACACAGCATACCTGACTGTGGTGTTCTCAAGTATATCAGTTATAAGTTCGGATTCCAGATTTCTTTGCCTCAATTCCTGCTTGTCAGTGAGATGGTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

85

Amino Acids

9.83

Weight (kDa)

9.23

Isoelectric Point (pI)

46.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 200
AciI CCGC 1 cut(s) 106
AclWI GGATC 1 cut(s) 73
AfiI CCNNNNNNNGG 1 cut(s) 175
AgsI TTSAA 1 cut(s) 29
AjnI CCWGG 1 cut(s) 122
AluBI AGCT 1 cut(s) 130
AluI AGCT 1 cut(s) 130
AlwI GGATC 1 cut(s) 73
Ama87I CYCGRG 1 cut(s) 95
ApeKI GCWGC 2 cut(s) 127, 130
AspS9I GGNCC 2 cut(s) 99, 153
AsuHPI GGTGA 1 cut(s) 112
AvaI CYCGRG 1 cut(s) 95
AvaII GGWCC 2 cut(s) 99, 153
BbsI GAAGAC 1 cut(s) 2
BbvI GCAGC 2 cut(s) 117, 139
BccI CCATC 1 cut(s) 243
BceAI ACGGC 1 cut(s) 93
BciT130I CCWGG 1 cut(s) 124
BisI GCNGC 2 cut(s) 128, 131
BlsI GCNGC 2 cut(s) 129, 132
Bme1390I CCNGG 1 cut(s) 124
Bme18I GGWCC 2 cut(s) 99, 153
BmeT110I CYCGRG 1 cut(s) 95
BmgT120I GGNCC 2 cut(s) 99, 153
BmiI GGNNCC 2 cut(s) 100, 101
BmrFI CCNGG 1 cut(s) 124
BpiI GAAGAC 1 cut(s) 2
BpuEI CTTGAG 1 cut(s) 169
BsaJI CCNNGG 1 cut(s) 72
Bsc4I CCNNNNNNNGG 1 cut(s) 175
BseBI CCWGG 1 cut(s) 124
BseDI CCNNGG 1 cut(s) 72
BseLI CCNNNNNNNGG 1 cut(s) 175
BseXI GCAGC 2 cut(s) 117, 139
BsiHKCI CYCGRG 1 cut(s) 95
BslFI GGGAC 1 cut(s) 112
BslI CCNNNNNNNGG 1 cut(s) 175
BsmFI GGGAC 1 cut(s) 112
BsoBI CYCGRG 1 cut(s) 95
Bsp143I GATC 1 cut(s) 78
BspACI CCGC 1 cut(s) 106
BspLI GGNNCC 2 cut(s) 100, 101
BspPI GGATC 1 cut(s) 73
BssECI CCNNGG 1 cut(s) 72
BssMI GATC 1 cut(s) 78
BssT1I CCWWGG 1 cut(s) 72
Bst2UI CCWGG 1 cut(s) 124
Bst4CI ACNGT 2 cut(s) 55, 175
BstKTI GATC 1 cut(s) 81
BstMBI GATC 1 cut(s) 78
BstNI CCWGG 1 cut(s) 124
BstSCI CCNGG 1 cut(s) 122
BstV1I GCAGC 2 cut(s) 117, 139
BstV2I GAAGAC 1 cut(s) 2
BstX2I RGATCY 1 cut(s) 78
BstYI RGATCY 1 cut(s) 78
BtsIMutI CAGTG 1 cut(s) 249
Cfr13I GGNCC 2 cut(s) 99, 153
CviAII CATG 1 cut(s) 150
CviJI RGCY 1 cut(s) 130
CviKI_1 RGCY 1 cut(s) 130
DpnI GATC 1 cut(s) 80
DpnII GATC 1 cut(s) 78
Eco130I CCWWGG 1 cut(s) 72
Eco47I GGWCC 2 cut(s) 99, 153
Eco88I CYCGRG 1 cut(s) 95
EcoO109I RGGNCCY 1 cut(s) 99
EcoRII CCWGG 1 cut(s) 122
EcoT14I CCWWGG 1 cut(s) 72
ErhI CCWWGG 1 cut(s) 72
FaeI CATG 1 cut(s) 153
FaiI YATR 6 cut(s) 20, 33, 151, 166, 191, 200
FaqI GGGAC 1 cut(s) 112
FatI CATG 1 cut(s) 149
Fnu4HI GCNGC 2 cut(s) 128, 131
Fsp4HI GCNGC 2 cut(s) 128, 131
GluI GCNGC 2 cut(s) 128, 131
Hin1II CATG 1 cut(s) 153
HinfI GANTC 3 cut(s) 7, 59, 209
HphI GGTGA 1 cut(s) 112
Hpy166II GTNNAC 1 cut(s) 137
Hpy188I TCNGA 1 cut(s) 208
Hpy188III TCNNGA 3 cut(s) 82, 97, 213
Hpy8I GTNNAC 1 cut(s) 137
Hpy99I CGWCG 1 cut(s) 114
HpyCH4III ACNGT 2 cut(s) 55, 175
Hsp92II CATG 1 cut(s) 153
KflI GGGWCCC 1 cut(s) 99
Kzo9I GATC 1 cut(s) 78
LpnPI CCDG 7 cut(s) 95, 109, 136, 153, 182, 226, 247
Lsp1109I GCAGC 2 cut(s) 117, 139
MalI GATC 1 cut(s) 80
MboI GATC 1 cut(s) 78
MboII GAAGA 1 cut(s) 5
MflI RGATCY 1 cut(s) 78
MluCI AATT 1 cut(s) 229
MlyI GAGTC 1 cut(s) 16
MnlI CCTC 1 cut(s) 236
MseI TTAA 1 cut(s) 256
MspA1I CMGCKG 1 cut(s) 130
MspR9I CCNGG 1 cut(s) 124
MvaI CCWGG 1 cut(s) 124
NdeII GATC 1 cut(s) 78
NlaIII CATG 1 cut(s) 153
NlaIV GGNNCC 2 cut(s) 100, 101
PfeI GAWTC 2 cut(s) 59, 209
PkrI GCNGC 2 cut(s) 129, 132
PleI GAGTC 1 cut(s) 15
PpsI GAGTC 1 cut(s) 15
PpuMI RGGWCCY 1 cut(s) 99
PsiI TTATAA 1 cut(s) 200
Psp5II RGGWCCY 1 cut(s) 99
Psp6I CCWGG 1 cut(s) 122
PspGI CCWGG 1 cut(s) 122
PspN4I GGNNCC 2 cut(s) 100, 101
PspPI GGNCC 2 cut(s) 99, 153
PspPPI RGGWCCY 1 cut(s) 99
PsuI RGATCY 1 cut(s) 78
PvuII CAGCTG 1 cut(s) 130
SaqAI TTAA 1 cut(s) 256
SatI GCNGC 2 cut(s) 128, 131
Sau3AI GATC 1 cut(s) 78
Sau96I GGNCC 2 cut(s) 99, 153
SchI GAGTC 1 cut(s) 16
ScrFI CCNGG 1 cut(s) 124
SetI ASST 3 cut(s) 74, 132, 171
SinI GGWCC 2 cut(s) 99, 153
SmlI CTYRAG 1 cut(s) 184
SmoI CTYRAG 1 cut(s) 184
Sse9I AATT 1 cut(s) 229
SsiI CCGC 1 cut(s) 106
StyD4I CCNGG 1 cut(s) 122
StyI CCWWGG 1 cut(s) 72
TaaI ACNGT 2 cut(s) 55, 175
TaqI TCGA 2 cut(s) 57, 112
TasI AATT 1 cut(s) 229
TfiI GAWTC 2 cut(s) 59, 209
Tru1I TTAA 1 cut(s) 256
Tru9I TTAA 1 cut(s) 256
TscAI CASTG 1 cut(s) 249
TseI GCWGC 2 cut(s) 127, 130
TspRI CASTG 1 cut(s) 249
VpaK11BI GGWCC 2 cut(s) 99, 153
XcmI CCANNNNNNNNNTGG 2 cut(s) 70, 147
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.