FvH4_7g04900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0006385
Physical Location & Seq
Forward (+)
5315334 .. 5323313
7980 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g04900.t2

Sequence Viewer

Length: 1368 bp
ATGAGGACAGCGGCGGCAAGATTAGGGTTAGGTTTAGCGGCGCCAAGTGCAAAGCAGAAAATTAGCCTGAGAAGATCCAGTACTACTTTAGCGGCCGCAACAGCAGATGTATCGAATAGGAAGCACATGAAATCGGAATCGGAAATGGAATTGGAATTGAACAAAGGCAAGAGCTTATACTTATGTTTCAATGAGTTTAGTAGATGCGGTGGTAAACGTTTCGTGAATCAAGTTGTTCGCTCGATCAGAATGGGTAGTGATGATGATGATGATGAGGAGGAGTACTTGCGGGAGGCAGCTTATAAGAGGTTCGAGGATGGCTGGAACTTTTCCTGTCGCTTCGGCTCCCAAATTCTTTTCCCTTTCAGCGCGCGTGGTTGTGTTGGTGGTGTTACACATATTAGATCGCTTGATACGTCGGCCCGGCCGCTCAAGTATTCCTCCCGGACGAAACTAACCTTCTCCCGTCCTAAGAATAGGCCAGTGCTGGGGGAGCTCAACCGCAAACTCTACTGTATCGACACCAACCCCGAAAGGATTGAGGGGGTTGATCCTCAAGCTCGCCCTTTTGAGGTTTTAGATCCCGAAAACGACCTCAAGTGGCGGTCTCTGGATGCTCCTCCCTTTATTGAGAGAGACACGTGTCGCTTCTTTGCCTCATTTTTGGAGGGGAGCAACAAAATCTTAGGTTGGGCGTGCAAGCAGCCTGGAGGTTATATGGGTAAGCTGCCTGCTGGAGAACAAGCGTGGGGGCCGCCTGAGCACCCTGGAGTGTTTTGCTTTGATGCAACCAAGCCTGAAAATGGATGGACCGAGTCATCTTTCAGTTTGGGTAACACCCTTCCCTCTCTTGGCTACCAAATTAGGACTCCTATCTTCATCCAAAACCATCATCCCAATCTTGGTGCTTTCCACCTATTGTTTAACTATGATCCTATCGATGACCCTCTCCGTGTATCCGCCTTTTTCATGTCAGACAATTGTGATAATTTTCATCGCCTCACATCCACACCTCTCAAGCTGCCAGATTTGTGTTATGAATATAACGAATTCAGAGAACCACATTCCGACACTATCTGTACTGATTTCAAATTTGTCCATCTCGGAGCTCAAAAAGTCTGCCTTGTTTTGAACAAATTCTTCTGTGATGGTCATTTTCAAGATAGAAACACGGGGAAGATTCTTCTCATAACATTTGAATATGACATTATTGCTACTACTGTCAAGGACTACTGCTTCAAATCAACAGTCCAGATCCAAACCCGATTGCTGAGGACCCGCCGCTTTCGATACCATTCCAGGAAGCTGCGTAAACCAGATGATACACGCACCAAAAGTTTTTGCATGACTGGTGCATTTCTGCTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

456

Amino Acids

52.01

Weight (kDa)

8.86

Isoelectric Point (pI)

42.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 303
AccB1I GGYRCC 1 cut(s) 40
AccBSI CCGCTC 1 cut(s) 430
AccII CGCG 2 cut(s) 371, 373
AclI AACGTT 1 cut(s) 217
AclWI GGATC 5 cut(s) 69, 545, 575, 926, 1249
AcoI YGGCCR 2 cut(s) 93, 425
AcsI RAATTY 4 cut(s) 351, 1049, 1091, 1136
AcvI CACGTG 1 cut(s) 642
AcyI GRCGYC 1 cut(s) 41
AfaI GTAC 3 cut(s) 82, 284, 1081
AfiI CCNNNNNNNGG 5 cut(s) 488, 571, 803, 851, 902
AflIII ACRYGT 2 cut(s) 639, 641
AgsI TTSAA 7 cut(s) 160, 190, 1090, 1132, 1160, 1199, 1240
AjnI CCWGG 3 cut(s) 706, 766, 1298
AluBI AGCT 8 cut(s) 174, 299, 496, 560, 727, 1021, 1109, 1306
AluI AGCT 8 cut(s) 174, 299, 496, 560, 727, 1021, 1109, 1306
Alw21I GWGCWC 3 cut(s) 498, 765, 1111
Alw26I GTCTC 2 cut(s) 612, 630
AlwI GGATC 5 cut(s) 69, 545, 575, 926, 1249
AoxI GGCC 5 cut(s) 93, 420, 425, 479, 752
ApeKI GCWGC 5 cut(s) 296, 703, 727, 1021, 1306
ApoI RAATTY 4 cut(s) 351, 1049, 1091, 1136
ArsI GACNNNNNNTTYG 2 cut(s) 1233, 1265
Asp700I GAANNNNTTC 1 cut(s) 1136
AspLEI GCGC 3 cut(s) 43, 371, 373
AspS9I GGNCC 4 cut(s) 421, 752, 810, 1275
AsuC2I CCSGG 2 cut(s) 424, 445
AvaII GGWCC 2 cut(s) 810, 1275
BanI GGYRCC 1 cut(s) 40
BanII GRGCYC 2 cut(s) 498, 1111
BarI GAAGNNNNNNTAC 2 cut(s) 64, 96
BbrPI CACGTG 1 cut(s) 642
Bbv12I GWGCWC 3 cut(s) 498, 765, 1111
BbvCI CCTCAGC 1 cut(s) 1271
BbvI GCAGC 5 cut(s) 308, 714, 715, 1008, 1293
BccI CCATC 5 cut(s) 311, 801, 897, 1107, 1142
BcgI CGANNNNNNTGC 2 cut(s) 93, 127
BciT130I CCWGG 3 cut(s) 708, 768, 1300
BciVI GTATCC 1 cut(s) 967
BcnI CCSGG 2 cut(s) 424, 445
BcoDI GTCTC 2 cut(s) 612, 630
BfoI RGCGCY 1 cut(s) 44
BfuI GTATCC 1 cut(s) 967
BmcAI AGTACT 2 cut(s) 82, 284
Bme1390I CCNGG 5 cut(s) 424, 445, 708, 768, 1300
Bme18I GGWCC 2 cut(s) 810, 1275
BmgT120I GGNCC 4 cut(s) 421, 752, 810, 1275
BmiI GGNNCC 4 cut(s) 42, 346, 753, 1277
BmrFI CCNGG 5 cut(s) 424, 445, 708, 768, 1300
BmsI GCATC 3 cut(s) 194, 604, 775
BoxI GACNNNNGTC 1 cut(s) 642
BpmI CTGGAG 3 cut(s) 729, 756, 789
Bpu10I CCTNAGC 2 cut(s) 759, 1271
BpuEI CTTGAG 4 cut(s) 416, 540, 581, 1001
BpuMI CCSGG 2 cut(s) 424, 445
Bsa29I ATCGAT 1 cut(s) 939
BsaAI YACGTR 1 cut(s) 642
BsaHI GRCGYC 1 cut(s) 41
BsaI GGTCTC 1 cut(s) 612
BsaJI CCNNGG 1 cut(s) 766
Bsc4I CCNNNNNNNGG 5 cut(s) 488, 571, 803, 851, 902
Bse1I ACTGG 3 cut(s) 78, 482, 1354
BseBI CCWGG 3 cut(s) 708, 768, 1300
BseCI ATCGAT 1 cut(s) 939
BseDI CCNNGG 1 cut(s) 766
BseGI GGATG 6 cut(s) 322, 619, 812, 879, 892, 1004
BseLI CCNNNNNNNGG 5 cut(s) 488, 571, 803, 851, 902
BseMII CTCAG 3 cut(s) 59, 750, 1262
BseNI ACTGG 3 cut(s) 78, 482, 1354
BsePI GCGCGC 1 cut(s) 369
BseRI GAGGAG 3 cut(s) 290, 293, 609
BseX3I CGGCCG 2 cut(s) 93, 425
BseXI GCAGC 5 cut(s) 308, 714, 715, 1008, 1293
BseYI CCCAGC 1 cut(s) 487
Bsh1236I CGCG 2 cut(s) 371, 373
Bsh1285I CGRYCG 2 cut(s) 96, 428
BshFI GGCC 5 cut(s) 95, 422, 427, 481, 754
BshNI GGYRCC 1 cut(s) 40
BshVI ATCGAT 1 cut(s) 939
BsiEI CGRYCG 2 cut(s) 96, 428
BsiHKAI GWGCWC 3 cut(s) 498, 765, 1111
BsiSI CCGG 2 cut(s) 424, 445
BslI CCNNNNNNNGG 5 cut(s) 488, 571, 803, 851, 902
BsmAI GTCTC 2 cut(s) 612, 630
BsnI GGCC 5 cut(s) 95, 422, 427, 481, 754
Bso31I GGTCTC 1 cut(s) 612
Bsp1286I GDGCHC 3 cut(s) 498, 765, 1111
Bsp143I GATC 7 cut(s) 74, 243, 404, 550, 580, 931, 1254
BspANI GGCC 5 cut(s) 95, 422, 427, 481, 754
BspCNI CTCAG 3 cut(s) 60, 751, 1263
BspDI ATCGAT 1 cut(s) 939
BspFNI CGCG 2 cut(s) 371, 373
BspLI GGNNCC 4 cut(s) 42, 346, 753, 1277
BspPI GGATC 5 cut(s) 69, 545, 575, 926, 1249
BspT107I GGYRCC 1 cut(s) 40
BspTNI GGTCTC 1 cut(s) 612
BsrBI CCGCTC 1 cut(s) 430
BsrI ACTGG 3 cut(s) 78, 482, 1354
BssECI CCNNGG 1 cut(s) 766
BssHII GCGCGC 1 cut(s) 369
BssMI GATC 7 cut(s) 74, 243, 404, 550, 580, 931, 1254
BssNI GRCGYC 1 cut(s) 41
Bst2UI CCWGG 3 cut(s) 708, 768, 1300
Bst4CI ACNGT 3 cut(s) 515, 1222, 1249
BstACI GRCGYC 1 cut(s) 41
BstBAI YACGTR 1 cut(s) 642
BstC8I GCNNGC 5 cut(s) 371, 562, 697, 701, 732
BstDEI CTNAG 5 cut(s) 68, 471, 685, 759, 1271
BstF5I GGATG 6 cut(s) 322, 619, 812, 879, 892, 1004
BstFNI CGCG 2 cut(s) 371, 373
BstH2I RGCGCY 1 cut(s) 44
BstHHI GCGC 3 cut(s) 43, 371, 373
BstKTI GATC 7 cut(s) 77, 246, 407, 553, 583, 934, 1257
BstMAI GTCTC 2 cut(s) 612, 630
BstMBI GATC 7 cut(s) 74, 243, 404, 550, 580, 931, 1254
BstMCI CGRYCG 2 cut(s) 96, 428
BstMWI GCNNNNNNNGC 4 cut(s) 47, 101, 493, 760
BstNI CCWGG 3 cut(s) 708, 768, 1300
BstPAI GACNNNNGTC 1 cut(s) 642
BstSCI CCNGG 5 cut(s) 422, 443, 706, 766, 1298
BstUI CGCG 2 cut(s) 371, 373
BstV1I GCAGC 5 cut(s) 308, 714, 715, 1008, 1293
BstX2I RGATCY 3 cut(s) 74, 580, 1254
BstYI RGATCY 3 cut(s) 74, 580, 1254
BstZI CGGCCG 2 cut(s) 93, 425
Bsu15I ATCGAT 1 cut(s) 939
BsuI GTATCC 1 cut(s) 967
BsuRI GGCC 5 cut(s) 95, 422, 427, 481, 754
BsuTUI ATCGAT 1 cut(s) 939
BtgZI GCGATG 1 cut(s) 980
BtsCI GGATG 6 cut(s) 322, 619, 812, 879, 892, 1004
BtsIMutI CAGTG 1 cut(s) 489
Cac8I GCNNGC 5 cut(s) 371, 562, 697, 701, 732
CciNI GCGGCCGC 1 cut(s) 93
CfoI GCGC 3 cut(s) 43, 371, 373
Cfr13I GGNCC 4 cut(s) 421, 752, 810, 1275
ClaI ATCGAT 1 cut(s) 939
Csp6I GTAC 3 cut(s) 81, 283, 1080
CviAII CATG 3 cut(s) 127, 970, 1345
CviQI GTAC 3 cut(s) 81, 283, 1080
DdeI CTNAG 5 cut(s) 68, 471, 685, 759, 1271
DinI GGCGCC 1 cut(s) 42
DpnI GATC 7 cut(s) 76, 245, 406, 552, 582, 933, 1256
DpnII GATC 7 cut(s) 74, 243, 404, 550, 580, 931, 1254
EaeI YGGCCR 2 cut(s) 93, 425
EagI CGGCCG 2 cut(s) 93, 425
EciI GGCGGA 1 cut(s) 949
Ecl136II GAGCTC 2 cut(s) 496, 1109
EclXI CGGCCG 2 cut(s) 93, 425
Eco24I GRGCYC 2 cut(s) 498, 1111
Eco31I GGTCTC 1 cut(s) 612
Eco47I GGWCC 2 cut(s) 810, 1275
Eco52I CGGCCG 2 cut(s) 93, 425
Eco53kI GAGCTC 2 cut(s) 496, 1109
Eco72I CACGTG 1 cut(s) 642
EcoICRI GAGCTC 2 cut(s) 496, 1109
EcoO109I RGGNCCY 1 cut(s) 1275
EcoRI GAATTC 1 cut(s) 1049
EcoRII CCWGG 3 cut(s) 706, 766, 1298
EcoT38I GRGCYC 2 cut(s) 498, 1111
EgeI GGCGCC 1 cut(s) 42
EheI GGCGCC 1 cut(s) 42
FaeI CATG 3 cut(s) 130, 973, 1348
FalI AAGNNNNNCTT 2 cut(s) 1107, 1139
FatI CATG 3 cut(s) 126, 969, 1344
FauI CCCGC 2 cut(s) 282, 1286
FokI GGATG 6 cut(s) 329, 626, 819, 866, 879, 991
FriOI GRGCYC 2 cut(s) 498, 1111
GlaI GCGC 3 cut(s) 42, 370, 372
GsaI CCCAGC 1 cut(s) 491
GsuI CTGGAG 3 cut(s) 729, 756, 789
HaeII RGCGCY 1 cut(s) 44
HaeIII GGCC 5 cut(s) 95, 422, 427, 481, 754
HapII CCGG 2 cut(s) 424, 445
HhaI GCGC 3 cut(s) 43, 371, 373
Hin1I GRCGYC 1 cut(s) 41
Hin1II CATG 3 cut(s) 130, 973, 1348
Hin6I GCGC 3 cut(s) 41, 369, 371
HinP1I GCGC 3 cut(s) 41, 369, 371
HinfI GANTC 5 cut(s) 137, 226, 815, 868, 1180
HpaII CCGG 2 cut(s) 424, 445
Hpy166II GTNNAC 2 cut(s) 215, 1313
Hpy188I TCNGA 7 cut(s) 136, 142, 248, 976, 1055, 1069, 1106
Hpy188III TCNNGA 5 cut(s) 223, 584, 611, 1160, 1252
Hpy8I GTNNAC 2 cut(s) 215, 1313
Hpy99I CGWCG 1 cut(s) 421
HpyAV CCTTC 2 cut(s) 469, 851
HpyCH4III ACNGT 3 cut(s) 515, 1222, 1249
HpyCH4IV ACGT 3 cut(s) 217, 416, 641
HpyCH4V TGCA 5 cut(s) 50, 699, 788, 1344, 1355
HpyF10VI GCNNNNNNNGC 4 cut(s) 47, 101, 493, 760
HpyF3I CTNAG 5 cut(s) 68, 471, 685, 759, 1271
HpySE526I ACGT 3 cut(s) 217, 416, 641
Hsp92I GRCGYC 1 cut(s) 41
Hsp92II CATG 3 cut(s) 130, 973, 1348
HspAI GCGC 3 cut(s) 41, 369, 371
KasI GGCGCC 1 cut(s) 40
Kzo9I GATC 7 cut(s) 74, 243, 404, 550, 580, 931, 1254
LmnI GCTCC 5 cut(s) 350, 493, 622, 672, 1106
Lsp1109I GCAGC 5 cut(s) 308, 714, 715, 1008, 1293
LweI GCATC 3 cut(s) 194, 604, 775
MaeII ACGT 3 cut(s) 217, 416, 641
MaeIII GTNAC 2 cut(s) 391, 833
MalI GATC 7 cut(s) 76, 245, 406, 552, 582, 933, 1256
MbiI CCGCTC 1 cut(s) 430
MboI GATC 7 cut(s) 74, 243, 404, 550, 580, 931, 1254
MboII GAAGA 5 cut(s) 84, 868, 1132, 1175, 1189
MfeI CAATTG 1 cut(s) 979
MflI RGATCY 3 cut(s) 74, 580, 1254
MhlI GDGCHC 3 cut(s) 498, 765, 1111
Mly113I GGCGCC 1 cut(s) 41
MlyI GAGTC 2 cut(s) 824, 862
MmeI TCCRAC 1 cut(s) 1092
MroXI GAANNNNTTC 1 cut(s) 1136
MseI TTAA 1 cut(s) 924
MspA1I CMGCKG 1 cut(s) 11
MspI CCGG 2 cut(s) 424, 445
MspR9I CCNGG 5 cut(s) 424, 445, 708, 768, 1300
MunI CAATTG 1 cut(s) 979
MvaI CCWGG 3 cut(s) 708, 768, 1300
MvnI CGCG 2 cut(s) 371, 373
MwoI GCNNNNNNNGC 4 cut(s) 47, 101, 493, 760
NarI GGCGCC 1 cut(s) 41
NciI CCSGG 2 cut(s) 424, 445
NdeII GATC 7 cut(s) 74, 243, 404, 550, 580, 931, 1254
NlaIII CATG 3 cut(s) 130, 973, 1348
NlaIV GGNNCC 4 cut(s) 42, 346, 753, 1277
NotI GCGGCCGC 1 cut(s) 93
PauI GCGCGC 1 cut(s) 369
PcsI WCGNNNNNNNCGW 1 cut(s) 413
PdmI GAANNNNTTC 1 cut(s) 1136
PfeI GAWTC 3 cut(s) 137, 226, 1180
PflFI GACNNNGTC 1 cut(s) 814
PfoI TCCNGGA 2 cut(s) 443, 1298
PleI GAGTC 2 cut(s) 823, 862
PluTI GGCGCC 1 cut(s) 44
PmaCI CACGTG 1 cut(s) 642
PmlI CACGTG 1 cut(s) 642
PpsI GAGTC 2 cut(s) 823, 862
Ppu21I YACGTR 1 cut(s) 642
PpuMI RGGWCCY 1 cut(s) 1275
PshAI GACNNNNGTC 1 cut(s) 642
PsiI TTATAA 1 cut(s) 303
Psp124BI GAGCTC 2 cut(s) 498, 1111
Psp1406I AACGTT 1 cut(s) 217
Psp5II RGGWCCY 1 cut(s) 1275
Psp6I CCWGG 3 cut(s) 706, 766, 1298
PspCI CACGTG 1 cut(s) 642
PspFI CCCAGC 1 cut(s) 487
PspGI CCWGG 3 cut(s) 706, 766, 1298
PspN4I GGNNCC 4 cut(s) 42, 346, 753, 1277
PspPI GGNCC 4 cut(s) 421, 752, 810, 1275
PspPPI RGGWCCY 1 cut(s) 1275
PsuI RGATCY 3 cut(s) 74, 580, 1254
PsyI GACNNNGTC 1 cut(s) 814
PteI GCGCGC 1 cut(s) 369
RsaI GTAC 3 cut(s) 82, 284, 1081
RsaNI GTAC 3 cut(s) 81, 283, 1080
SacI GAGCTC 2 cut(s) 498, 1111
SaqAI TTAA 1 cut(s) 924
Sau3AI GATC 7 cut(s) 74, 243, 404, 550, 580, 931, 1254
Sau96I GGNCC 4 cut(s) 421, 752, 810, 1275
ScaI AGTACT 2 cut(s) 82, 284
SchI GAGTC 2 cut(s) 824, 862
ScrFI CCNGG 5 cut(s) 424, 445, 708, 768, 1300
SduI GDGCHC 3 cut(s) 498, 765, 1111
SfaNI GCATC 3 cut(s) 194, 604, 775
SfoI GGCGCC 1 cut(s) 42
SinI GGWCC 2 cut(s) 810, 1275
SmlI CTYRAG 4 cut(s) 431, 555, 596, 1016
SmoI CTYRAG 4 cut(s) 431, 555, 596, 1016
SspDI GGCGCC 1 cut(s) 40
SstI GAGCTC 2 cut(s) 498, 1111
StyD4I CCNGG 5 cut(s) 422, 443, 706, 766, 1298
TaaI ACNGT 3 cut(s) 515, 1222, 1249
TaiI ACGT 3 cut(s) 220, 419, 644
TaqI TCGA 6 cut(s) 113, 242, 312, 519, 939, 1288
TaqII GACCGA 1 cut(s) 827
TatI WGTACW 3 cut(s) 80, 282, 1079
TauI GCSGC 8 cut(s) 14, 17, 41, 95, 98, 430, 757, 1284
TfiI GAWTC 3 cut(s) 137, 226, 1180
Tru1I TTAA 1 cut(s) 924
Tru9I TTAA 1 cut(s) 924
TscAI CASTG 1 cut(s) 489
TseI GCWGC 5 cut(s) 296, 703, 727, 1021, 1306
TspDTI ATGAA 5 cut(s) 143, 868, 958, 983, 1053
TspGWI ACGGA 1 cut(s) 941
TspRI CASTG 1 cut(s) 489
Tth111I GACNNNGTC 1 cut(s) 814
VpaK11BI GGWCC 2 cut(s) 810, 1275
XapI RAATTY 4 cut(s) 351, 1049, 1091, 1136
XmnI GAANNNNTTC 1 cut(s) 1136
ZrmI AGTACT 2 cut(s) 82, 284
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.