Rh2DG332700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0006385
Physical Location & Seq
Reverse (-)
42468991 .. 42470025
1035 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG332700.1

Sequence Viewer

Length: 660 bp
ATGGGACTGAGGACAGCCGCAGCAAGATTAAGGTTAGAATTAGCGAGTGCAAGGAATGATCCGAAGCAGAAATTGATGATGATCAAGAAAATTAGCAGCAGTAGCAGCCTTTCCCAGTTTATGAGAAGATCCAGTAGTTTAGCAAGGGCAGCAGATACATGGGAGAAGAAGGGTATGAAATCGGAATCGGAAATGGAATTGGAATTGGAATTGAATAAGGAGAACACTGTATACTTATGTTTCTTTGAGTCGAGTCAATGCGGTGCTGTTGAATACCTGAATCAAGTTATTCGCCCCATCAAATTGAGCCAGGTTAATAGTAATGATGATGATATTGCTATGGAGTTGCGCGAAGCAGCTTATAAGAGGTCTAAGGTTAATTTATGGTATTCCAATTGCAGTCGCTTCGACTCCCAAATTCTTGTCGCTGGCGGCCGTAGAAGGCCCCCGCCAGACATTATGGGTCCTGCTATTGGCAGTAGAGATATTTATTGGTTTGAAACGACCCAGGGGAAATTCCAGGTTTCCTCCCCAACGAAAACCAAAATCAAGAGCTTCTTAACAGGTAAGCAAGCTGTGTTGTTAAGGGAGCTGAACCGCAAACTCTATTGCATTGAGAACAACCCCATTAACATGACTCCTCCCTCTCAGCCTTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

219

Amino Acids

24.93

Weight (kDa)

9.62

Isoelectric Point (pI)

51.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 363
AccI GTMKAC 1 cut(s) 231
AccII CGCG 1 cut(s) 351
AciI CCGC 5 cut(s) 18, 261, 432, 449, 598
AclWI GGATC 2 cut(s) 53, 123
AcoI YGGCCR 1 cut(s) 433
AcsI RAATTY 2 cut(s) 417, 515
AfiI CCNNNNNNNGG 1 cut(s) 473
AgsI TTSAA 3 cut(s) 214, 272, 500
AjnI CCWGG 3 cut(s) 309, 507, 519
AluBI AGCT 4 cut(s) 359, 555, 575, 592
AluI AGCT 4 cut(s) 359, 555, 575, 592
AlwI GGATC 2 cut(s) 53, 123
AoxI GGCC 2 cut(s) 433, 443
ApeKI GCWGC 5 cut(s) 20, 96, 105, 149, 356
ApoI RAATTY 2 cut(s) 417, 515
AspLEI GCGC 1 cut(s) 351
AspS9I GGNCC 2 cut(s) 444, 464
AvaII GGWCC 1 cut(s) 464
BbvI GCAGC 5 cut(s) 32, 108, 117, 161, 368
BccI CCATC 1 cut(s) 305
BceAI ACGGC 1 cut(s) 420
BcgI CGANNNNNNTGC 2 cut(s) 388, 422
BciT130I CCWGG 3 cut(s) 311, 509, 521
BclI TGATCA 1 cut(s) 81
BisI GCNGC 7 cut(s) 18, 21, 97, 106, 150, 357, 433
BlsI GCNGC 7 cut(s) 19, 22, 98, 107, 151, 358, 434
Bme1390I CCNGG 3 cut(s) 311, 509, 521
Bme18I GGWCC 1 cut(s) 464
BmgT120I GGNCC 2 cut(s) 444, 464
BmiI GGNNCC 2 cut(s) 446, 465
BmrFI CCNGG 3 cut(s) 311, 509, 521
BmrI ACTGGG 1 cut(s) 109
BmuI ACTGGG 1 cut(s) 109
BsaBI GATNNNNATC 1 cut(s) 80
BsaJI CCNNGG 2 cut(s) 507, 508
Bsc4I CCNNNNNNNGG 1 cut(s) 473
Bse1I ACTGG 2 cut(s) 115, 132
Bse8I GATNNNNATC 1 cut(s) 80
BseBI CCWGG 3 cut(s) 311, 509, 521
BseDI CCNNGG 2 cut(s) 507, 508
BseJI GATNNNNATC 1 cut(s) 80
BseLI CCNNNNNNNGG 1 cut(s) 473
BseNI ACTGG 2 cut(s) 115, 132
BseRI GAGGAG 1 cut(s) 630
BseX3I CGGCCG 1 cut(s) 433
BseXI GCAGC 5 cut(s) 32, 108, 117, 161, 368
Bsh1236I CGCG 1 cut(s) 351
Bsh1285I CGRYCG 1 cut(s) 436
BshFI GGCC 2 cut(s) 435, 445
BsiEI CGRYCG 1 cut(s) 436
BslFI GGGAC 1 cut(s) 18
BslI CCNNNNNNNGG 1 cut(s) 473
BsmFI GGGAC 1 cut(s) 18
BsnI GGCC 2 cut(s) 435, 445
Bsp143I GATC 3 cut(s) 58, 81, 128
BspACI CCGC 5 cut(s) 18, 261, 432, 449, 598
BspANI GGCC 2 cut(s) 435, 445
BspFNI CGCG 1 cut(s) 351
BspLI GGNNCC 2 cut(s) 446, 465
BspPI GGATC 2 cut(s) 53, 123
BsrI ACTGG 2 cut(s) 115, 132
BssECI CCNNGG 2 cut(s) 507, 508
BssMI GATC 3 cut(s) 58, 81, 128
BssNAI GTATAC 1 cut(s) 232
Bst1107I GTATAC 1 cut(s) 232
Bst2UI CCWGG 3 cut(s) 311, 509, 521
Bst4CI ACNGT 1 cut(s) 229
BstC8I GCNNGC 2 cut(s) 430, 573
BstDEI CTNAG 3 cut(s) 8, 372, 648
BstFNI CGCG 1 cut(s) 351
BstHHI GCGC 1 cut(s) 351
BstKTI GATC 3 cut(s) 61, 84, 131
BstMBI GATC 3 cut(s) 58, 81, 128
BstMCI CGRYCG 1 cut(s) 436
BstMWI GCNNNNNNNGC 3 cut(s) 102, 105, 149
BstNI CCWGG 3 cut(s) 311, 509, 521
BstSCI CCNGG 3 cut(s) 309, 507, 519
BstUI CGCG 1 cut(s) 351
BstV1I GCAGC 5 cut(s) 32, 108, 117, 161, 368
BstX2I RGATCY 1 cut(s) 128
BstYI RGATCY 1 cut(s) 128
BstZ17I GTATAC 1 cut(s) 232
BstZI CGGCCG 1 cut(s) 433
BsuRI GGCC 2 cut(s) 435, 445
BtsIMutI CAGTG 1 cut(s) 225
Cac8I GCNNGC 2 cut(s) 430, 573
CfoI GCGC 1 cut(s) 351
Cfr13I GGNCC 2 cut(s) 444, 464
CviAII CATG 2 cut(s) 159, 634
DdeI CTNAG 3 cut(s) 8, 372, 648
DpnI GATC 3 cut(s) 60, 83, 130
DpnII GATC 3 cut(s) 58, 81, 128
EaeI YGGCCR 1 cut(s) 433
EagI CGGCCG 1 cut(s) 433
EclXI CGGCCG 1 cut(s) 433
Eco47I GGWCC 1 cut(s) 464
Eco52I CGGCCG 1 cut(s) 433
EcoO109I RGGNCCY 2 cut(s) 444, 464
EcoRII CCWGG 3 cut(s) 309, 507, 519
FaeI CATG 2 cut(s) 162, 637
FalI AAGNNNNNCTT 2 cut(s) 542, 574
FaqI GGGAC 1 cut(s) 18
FatI CATG 2 cut(s) 158, 633
FauI CCCGC 1 cut(s) 456
FbaI TGATCA 1 cut(s) 81
FblI GTMKAC 1 cut(s) 231
Fnu4HI GCNGC 7 cut(s) 18, 21, 97, 106, 150, 357, 433
Fsp4HI GCNGC 7 cut(s) 18, 21, 97, 106, 150, 357, 433
GlaI GCGC 1 cut(s) 350
GluI GCNGC 7 cut(s) 18, 21, 97, 106, 150, 357, 433
HaeIII GGCC 2 cut(s) 435, 445
HhaI GCGC 1 cut(s) 351
Hin1II CATG 2 cut(s) 162, 637
Hin6I GCGC 1 cut(s) 349
HinP1I GCGC 1 cut(s) 349
HinfI GANTC 6 cut(s) 185, 248, 253, 280, 410, 637
Hpy166II GTNNAC 1 cut(s) 232
Hpy188I TCNGA 3 cut(s) 63, 184, 190
Hpy188III TCNNGA 2 cut(s) 85, 550
Hpy8I GTNNAC 1 cut(s) 232
HpyAV CCTTC 2 cut(s) 163, 435
HpyCH4III ACNGT 1 cut(s) 229
HpyCH4V TGCA 3 cut(s) 50, 399, 612
HpyF10VI GCNNNNNNNGC 3 cut(s) 102, 105, 149
HpyF3I CTNAG 3 cut(s) 8, 372, 648
Hsp92II CATG 2 cut(s) 162, 637
HspAI GCGC 1 cut(s) 349
Ksp22I TGATCA 1 cut(s) 81
Kzo9I GATC 3 cut(s) 58, 81, 128
LmnI GCTCC 1 cut(s) 589
Lsp1109I GCAGC 5 cut(s) 32, 108, 117, 161, 368
MalI GATC 3 cut(s) 60, 83, 130
MboI GATC 3 cut(s) 58, 81, 128
MboII GAAGA 2 cut(s) 138, 178
MfeI CAATTG 1 cut(s) 394
MflI RGATCY 1 cut(s) 128
MlyI GAGTC 4 cut(s) 257, 262, 404, 631
MnlI CCTC 5 cut(s) 3, 360, 538, 651, 655
MseI TTAA 6 cut(s) 29, 315, 378, 560, 584, 630
MslI CAYNNNNRTG 1 cut(s) 632
MspR9I CCNGG 3 cut(s) 311, 509, 521
MunI CAATTG 1 cut(s) 394
MvaI CCWGG 3 cut(s) 311, 509, 521
MvnI CGCG 1 cut(s) 351
MwoI GCNNNNNNNGC 3 cut(s) 102, 105, 149
NdeII GATC 3 cut(s) 58, 81, 128
NlaIII CATG 2 cut(s) 162, 637
NlaIV GGNNCC 2 cut(s) 446, 465
PasI CCCWGGG 1 cut(s) 508
PfeI GAWTC 2 cut(s) 185, 280
PkrI GCNGC 7 cut(s) 19, 22, 98, 107, 151, 358, 434
PleI GAGTC 4 cut(s) 256, 261, 404, 631
PpsI GAGTC 4 cut(s) 256, 261, 404, 631
PpuMI RGGWCCY 1 cut(s) 464
PsiI TTATAA 1 cut(s) 363
Psp5II RGGWCCY 1 cut(s) 464
Psp6I CCWGG 3 cut(s) 309, 507, 519
PspGI CCWGG 3 cut(s) 309, 507, 519
PspN4I GGNNCC 2 cut(s) 446, 465
PspPI GGNCC 2 cut(s) 444, 464
PspPPI RGGWCCY 1 cut(s) 464
PsrI GAACNNNNNNTAC 2 cut(s) 215, 247
PsuI RGATCY 1 cut(s) 128
RseI CAYNNNNRTG 1 cut(s) 632
SaqAI TTAA 6 cut(s) 29, 315, 378, 560, 584, 630
SatI GCNGC 7 cut(s) 18, 21, 97, 106, 150, 357, 433
Sau3AI GATC 3 cut(s) 58, 81, 128
Sau96I GGNCC 2 cut(s) 444, 464
SchI GAGTC 4 cut(s) 257, 262, 404, 631
ScrFI CCNGG 3 cut(s) 311, 509, 521
SinI GGWCC 1 cut(s) 464
SmiMI CAYNNNNRTG 1 cut(s) 632
SsiI CCGC 5 cut(s) 18, 261, 432, 449, 598
StyD4I CCNGG 3 cut(s) 309, 507, 519
TaaI ACNGT 1 cut(s) 229
TaqI TCGA 2 cut(s) 251, 408
TauI GCSGC 2 cut(s) 20, 435
TfiI GAWTC 2 cut(s) 185, 280
Tru1I TTAA 6 cut(s) 29, 315, 378, 560, 584, 630
Tru9I TTAA 6 cut(s) 29, 315, 378, 560, 584, 630
TscAI CASTG 1 cut(s) 232
TseI GCWGC 5 cut(s) 20, 96, 105, 149, 356
TspDTI ATGAA 1 cut(s) 191
TspRI CASTG 1 cut(s) 232
VpaK11BI GGWCC 1 cut(s) 464
XapI RAATTY 2 cut(s) 417, 515
XmiI GTMKAC 1 cut(s) 231
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.