RchiOBHm_Chr2g0124211

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0006385
Physical Location & Seq
Reverse (-)
37572780 .. 37573976
1197 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ49644

Sequence Viewer

Length: 627 bp
ATGGAATTGGAATTGAATAAGGAGAAGACTGTATACTTGTGTTTCTTTGAGTGGAGTCAATGCGGTGCTGTTGAATACCTGAATCAAGTTATTCGCCCCATCAAATTGAGCCAGGTTAATAGTAATGATGATGCTGATGATGATATTGCCGGGGAGTTGCGCGAAGCAGCTTATAAGAGGTCCAAGGTTAATTTATGGTATTCCAATTGCAGTCGCTTCGGCTCCCAAATTCTTGTCGCCGGTGGCCGTAGAAGGCCCCCGCCAGACATTATGGGTCCTGCTATTGCCCGTAGAGATATTTATTGGTTTGACACGGCCCAGGGGAAATTCCAGGTTTCCTCCCCAACGAAAACCAAAATCAAGAGCTTCTCAACTGGTAAACAAGCCGTGCTGTTGGGGGAGCTGAACCGCAAACTCTATTGCATCGAGAACGACCCCTTTAGCACGACTCCTCCCTCTCAGCCTTTTCAGGTATTGGACCCCGAAAACGACCTCAAGTGGCGGTCTCTGGAAGCGCCTCCCTTTATCCGCGGCCAAGAGTCGGAGGACTTCACTGCGTCTTTTTTTGGAGGGGAGCAACAAAATCTTAGGTTGGGTGTGGCAGCAGCCTGGAGTGTTTTGCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

208

Amino Acids

23.54

Weight (kDa)

5.69

Isoelectric Point (pI)

48.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 174
AccI GTMKAC 1 cut(s) 33
AccII CGCG 2 cut(s) 162, 531
AciI CCGC 6 cut(s) 63, 260, 409, 502, 529, 531
AcoI YGGCCR 2 cut(s) 244, 532
AcsI RAATTY 2 cut(s) 228, 326
AfiI CCNNNNNNNGG 1 cut(s) 541
AgsI TTSAA 2 cut(s) 16, 74
AjnI CCWGG 4 cut(s) 111, 318, 330, 608
AluBI AGCT 3 cut(s) 170, 366, 403
AluI AGCT 3 cut(s) 170, 366, 403
Alw26I GTCTC 1 cut(s) 510
AoxI GGCC 4 cut(s) 244, 254, 315, 532
ApeKI GCWGC 3 cut(s) 167, 602, 605
ApoI RAATTY 2 cut(s) 228, 326
AspLEI GCGC 2 cut(s) 162, 517
AspS9I GGNCC 5 cut(s) 180, 255, 275, 316, 478
AsuC2I CCSGG 1 cut(s) 151
AvaII GGWCC 3 cut(s) 180, 275, 478
BarI GAAGNNNNNNTAC 2 cut(s) 17, 49
BbsI GAAGAC 1 cut(s) 32
BbvI GCAGC 3 cut(s) 179, 614, 617
BccI CCATC 1 cut(s) 107
BceAI ACGGC 3 cut(s) 231, 330, 371
BcgI CGANNNNNNTGC 2 cut(s) 199, 233
BciT130I CCWGG 4 cut(s) 113, 320, 332, 610
BcnI CCSGG 1 cut(s) 151
BcoDI GTCTC 1 cut(s) 510
BfoI RGCGCY 1 cut(s) 518
BisI GCNGC 4 cut(s) 168, 532, 603, 606
BlsI GCNGC 4 cut(s) 169, 533, 604, 607
Bme1390I CCNGG 5 cut(s) 113, 151, 320, 332, 610
Bme18I GGWCC 3 cut(s) 180, 275, 478
BmgT120I GGNCC 5 cut(s) 180, 255, 275, 316, 478
BmiI GGNNCC 4 cut(s) 223, 257, 276, 480
BmrFI CCNGG 5 cut(s) 113, 151, 320, 332, 610
BmsI GCATC 2 cut(s) 121, 432
BpiI GAAGAC 1 cut(s) 32
BpuEI CTTGAG 1 cut(s) 479
BpuMI CCSGG 1 cut(s) 151
BsaI GGTCTC 1 cut(s) 510
BsaJI CCNNGG 5 cut(s) 150, 183, 318, 319, 529
BsaXI ACNNNNNCTCC 2 cut(s) 436, 466
Bsc4I CCNNNNNNNGG 1 cut(s) 541
Bse118I RCCGGY 1 cut(s) 239
Bse1I ACTGG 1 cut(s) 379
BseBI CCWGG 4 cut(s) 113, 320, 332, 610
BseDI CCNNGG 5 cut(s) 150, 183, 318, 319, 529
BseLI CCNNNNNNNGG 1 cut(s) 541
BseMII CTCAG 1 cut(s) 473
BseNI ACTGG 1 cut(s) 379
BseRI GAGGAG 1 cut(s) 441
BseXI GCAGC 3 cut(s) 179, 614, 617
Bsh1236I CGCG 2 cut(s) 162, 531
BshFI GGCC 4 cut(s) 246, 256, 317, 534
BsiSI CCGG 2 cut(s) 150, 240
BslI CCNNNNNNNGG 1 cut(s) 541
BsmAI GTCTC 1 cut(s) 510
BsnI GGCC 4 cut(s) 246, 256, 317, 534
Bso31I GGTCTC 1 cut(s) 510
BspACI CCGC 6 cut(s) 63, 260, 409, 502, 529, 531
BspANI GGCC 4 cut(s) 246, 256, 317, 534
BspCNI CTCAG 1 cut(s) 472
BspFNI CGCG 2 cut(s) 162, 531
BspLI GGNNCC 4 cut(s) 223, 257, 276, 480
BspTNI GGTCTC 1 cut(s) 510
BsrFI RCCGGY 1 cut(s) 239
BsrI ACTGG 1 cut(s) 379
BssAI RCCGGY 1 cut(s) 239
BssECI CCNNGG 5 cut(s) 150, 183, 318, 319, 529
BssNAI GTATAC 1 cut(s) 34
BssT1I CCWWGG 1 cut(s) 183
Bst1107I GTATAC 1 cut(s) 34
Bst2UI CCWGG 4 cut(s) 113, 320, 332, 610
Bst4CI ACNGT 1 cut(s) 31
BstDEI CTNAG 2 cut(s) 459, 587
BstDSI CCRYGG 1 cut(s) 529
BstFNI CGCG 2 cut(s) 162, 531
BstH2I RGCGCY 1 cut(s) 518
BstHHI GCGC 2 cut(s) 162, 517
BstMAI GTCTC 1 cut(s) 510
BstNI CCWGG 4 cut(s) 113, 320, 332, 610
BstSCI CCNGG 5 cut(s) 111, 149, 318, 330, 608
BstUI CGCG 2 cut(s) 162, 531
BstV1I GCAGC 3 cut(s) 179, 614, 617
BstV2I GAAGAC 1 cut(s) 32
BstZ17I GTATAC 1 cut(s) 34
BsuRI GGCC 4 cut(s) 246, 256, 317, 534
BtgI CCRYGG 1 cut(s) 529
BtsI GCAGTG 1 cut(s) 552
BtsIMutI CAGTG 1 cut(s) 552
CfoI GCGC 2 cut(s) 162, 517
Cfr10I RCCGGY 1 cut(s) 239
Cfr13I GGNCC 5 cut(s) 180, 255, 275, 316, 478
Cfr42I CCGCGG 1 cut(s) 532
CseI GACGC 1 cut(s) 546
DdeI CTNAG 2 cut(s) 459, 587
EaeI YGGCCR 2 cut(s) 244, 532
Eco130I CCWWGG 1 cut(s) 183
Eco31I GGTCTC 1 cut(s) 510
Eco47I GGWCC 3 cut(s) 180, 275, 478
EcoO109I RGGNCCY 2 cut(s) 255, 275
EcoRII CCWGG 4 cut(s) 111, 318, 330, 608
EcoT14I CCWWGG 1 cut(s) 183
ErhI CCWWGG 1 cut(s) 183
FaiI YATR 4 cut(s) 34, 174, 196, 272
FauI CCCGC 1 cut(s) 267
FblI GTMKAC 1 cut(s) 33
Fnu4HI GCNGC 4 cut(s) 168, 532, 603, 606
Fsp4HI GCNGC 4 cut(s) 168, 532, 603, 606
GlaI GCGC 2 cut(s) 161, 516
GluI GCNGC 4 cut(s) 168, 532, 603, 606
HaeII RGCGCY 1 cut(s) 518
HaeIII GGCC 4 cut(s) 246, 256, 317, 534
HapII CCGG 2 cut(s) 150, 240
HgaI GACGC 1 cut(s) 546
HhaI GCGC 2 cut(s) 162, 517
Hin6I GCGC 2 cut(s) 160, 515
HinP1I GCGC 2 cut(s) 160, 515
HinfI GANTC 4 cut(s) 55, 82, 448, 539
HpaII CCGG 2 cut(s) 150, 240
Hpy166II GTNNAC 2 cut(s) 34, 380
Hpy188I TCNGA 1 cut(s) 544
Hpy188III TCNNGA 3 cut(s) 361, 427, 509
Hpy8I GTNNAC 2 cut(s) 34, 380
HpyAV CCTTC 1 cut(s) 246
HpyCH4III ACNGT 1 cut(s) 31
HpyCH4V TGCA 2 cut(s) 210, 423
HpyF3I CTNAG 2 cut(s) 459, 587
HspAI GCGC 2 cut(s) 160, 515
KspI CCGCGG 1 cut(s) 532
LmnI GCTCC 3 cut(s) 227, 400, 574
Lsp1109I GCAGC 3 cut(s) 179, 614, 617
LweI GCATC 2 cut(s) 121, 432
MboII GAAGA 1 cut(s) 37
MfeI CAATTG 1 cut(s) 205
MluCI AATT 7 cut(s) 5, 11, 104, 190, 205, 228, 326
MlyI GAGTC 3 cut(s) 64, 442, 548
MmeI TCCRAC 1 cut(s) 522
MnlI CCTC 8 cut(s) 171, 349, 462, 466, 503, 528, 538, 563
MseI TTAA 2 cut(s) 117, 189
MspA1I CMGCKG 1 cut(s) 531
MspI CCGG 2 cut(s) 150, 240
MspR9I CCNGG 5 cut(s) 113, 151, 320, 332, 610
MunI CAATTG 1 cut(s) 205
MvaI CCWGG 4 cut(s) 113, 320, 332, 610
MvnI CGCG 2 cut(s) 162, 531
NciI CCSGG 1 cut(s) 151
NlaIV GGNNCC 4 cut(s) 223, 257, 276, 480
PasI CCCWGGG 1 cut(s) 319
PfeI GAWTC 1 cut(s) 82
PkrI GCNGC 4 cut(s) 169, 533, 604, 607
PleI GAGTC 3 cut(s) 63, 442, 547
PpsI GAGTC 3 cut(s) 63, 442, 547
PpuMI RGGWCCY 1 cut(s) 275
PsiI TTATAA 1 cut(s) 174
Psp5II RGGWCCY 1 cut(s) 275
Psp6I CCWGG 4 cut(s) 111, 318, 330, 608
PspGI CCWGG 4 cut(s) 111, 318, 330, 608
PspN4I GGNNCC 4 cut(s) 223, 257, 276, 480
PspPI GGNCC 5 cut(s) 180, 255, 275, 316, 478
PspPPI RGGWCCY 1 cut(s) 275
SacII CCGCGG 1 cut(s) 532
SaqAI TTAA 2 cut(s) 117, 189
SatI GCNGC 4 cut(s) 168, 532, 603, 606
Sau96I GGNCC 5 cut(s) 180, 255, 275, 316, 478
SchI GAGTC 3 cut(s) 64, 442, 548
ScrFI CCNGG 5 cut(s) 113, 151, 320, 332, 610
SfaNI GCATC 2 cut(s) 121, 432
Sfr303I CCGCGG 1 cut(s) 532
SgrAI CRCCGGYG 1 cut(s) 239
SgrBI CCGCGG 1 cut(s) 532
SinI GGWCC 3 cut(s) 180, 275, 478
SmlI CTYRAG 1 cut(s) 494
SmoI CTYRAG 1 cut(s) 494
Sse9I AATT 7 cut(s) 5, 11, 104, 190, 205, 228, 326
SsiI CCGC 6 cut(s) 63, 260, 409, 502, 529, 531
StyD4I CCNGG 5 cut(s) 111, 149, 318, 330, 608
StyI CCWWGG 1 cut(s) 183
TaaI ACNGT 1 cut(s) 31
TaqI TCGA 1 cut(s) 426
TasI AATT 7 cut(s) 5, 11, 104, 190, 205, 228, 326
TauI GCSGC 1 cut(s) 534
TfiI GAWTC 1 cut(s) 82
Tru1I TTAA 2 cut(s) 117, 189
Tru9I TTAA 2 cut(s) 117, 189
TscAI CASTG 1 cut(s) 559
TseI GCWGC 3 cut(s) 167, 602, 605
TspRI CASTG 1 cut(s) 559
VpaK11BI GGWCC 3 cut(s) 180, 275, 478
XapI RAATTY 2 cut(s) 228, 326
XmiI GTMKAC 1 cut(s) 33
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.