Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0006385

Physical Location & Seq

Genomic Coordinates Reverse (-)

37674517 .. 37675545

Gene Structure 1029 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG317700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

ATGGGACTGAGGACAGTCGCAGCAAGATTAGGGTTACAATTAGCGAGTGCAAGGAAGGATCCGAAGCAGAAATTGATGATGATCAAGAAAATTAGCAGCAGCAGCCTTTCACAGTTTATGAGAAGATCCAGTAGTTTAGCAAGGGCAGCAGATAAATGGGAGAAGAAGGGTATGAAATCGGAATCGGAAATGGAATTGGAATTGAATAAGGAGAAGACTGTATACTTGTGTTTCTTTGAGTGGAGTCAATGCGGTGCTGTTGAATACCTGAATCAAGTTATTCGCCCCATCAAATTGAGCCAGGTTAATAGTAATGATGATGCTGATGATGATATTGCCGGGGAGTTGCGCGAAGCAGCTTATAAGAGGTCCAAGGTTAATTTATGGTATTCCAATTGCAGTCGCTTCGGCTCCCAAATTCTTGTCGCCGGTGGCCGTAGAAGGCCCCCGCCAGACATTATGGGTCCTGCTATTGCCCGTAGAGATATTTATTGGTTTGACACGGCCCAGGGGAAATTCCAGGTTTCCTCCCCAACGAAAACCAAAATCAAGAGCTTCTCAACTGGTAAACAAGCCGTGCTGTTGGGGGAGCTGAACCGCAAACTCTATTGCATCGAGAACGACCCCTTTAGCACGACTCCTCCCTCTCAGCCTTTTCAGGTATTGGACCCCGAAAACGACCTCAAGTGGCGGTCTCTGGAAGCGCCTCCCTTTATCCGCGGCCAAGAGTCGGAGGACTTCACTGCGTCTTTTTTTGGAGGGGAGCAACAAAATCTTAGGTTGGGTGTGGCAGCAGCCTGGAGTGTTTTGCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

271

Amino Acids

30.56

Weight (kDa)

9.37

Isoelectric Point (pI)

49.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006385)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g10590 FvH4_7g04900 FvH4_7g04900 FvH4_7g06271
rosa_chinensis	RchiOBHm_Chr2g0124211
rosa_laevigata	RLG00000018039 RLG00000018795 RLG00000022953
rosa_multiflora	Rmu_sc0002968.1_g000024 Rmu_sc0005472.1_g000005 Rmu_sc0005949.1_g000011 Rmu_sc0018337.1_g000004
rosa_roxburghii	Rroxscaffold_2G00120080
rosa_rugosa	Rorug02G0249000
rosa_samantha	Rh2AG239400 Rh2AG308700 Rh2BG252900 Rh2BG253000 Rh2BG253300 Rh2BG317700 Rh2CG243500 Rh2CG295800 Rh2DG247300 Rh2DG247400 Rh2DG332700 Rh5CG553900
rosa_wichuraiana	Rw2G018750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	363
AccI	GTMKAC	1 cut(s)	222
AccII	CGCG	2 cut(s)	351, 720
AciI	CCGC	6 cut(s)	252, 449, 598, 691, 718, 720
AclWI	GGATC	3 cut(s)	53, 66, 120
AcoI	YGGCCR	2 cut(s)	433, 721
AcsI	RAATTY	2 cut(s)	417, 515
AfiI	CCNNNNNNNGG	1 cut(s)	730
AgsI	TTSAA	2 cut(s)	205, 263
AjnI	CCWGG	4 cut(s)	300, 507, 519, 797
AluBI	AGCT	3 cut(s)	359, 555, 592
AluI	AGCT	3 cut(s)	359, 555, 592
Alw26I	GTCTC	1 cut(s)	699
AlwI	GGATC	3 cut(s)	53, 66, 120
AoxI	GGCC	4 cut(s)	433, 443, 504, 721
ApeKI	GCWGC	8 cut(s)	20, 96, 99, 102, 146, 356, 791, 794
ApoI	RAATTY	2 cut(s)	417, 515
AspLEI	GCGC	2 cut(s)	351, 706
AspS9I	GGNCC	5 cut(s)	369, 444, 464, 505, 667
AsuC2I	CCSGG	1 cut(s)	340
AvaII	GGWCC	3 cut(s)	369, 464, 667
BamHI	GGATCC	1 cut(s)	58
BarI	GAAGNNNNNNTAC	2 cut(s)	206, 238
BbsI	GAAGAC	1 cut(s)	221
BbvI	GCAGC	8 cut(s)	32, 108, 111, 114, 158, 368, 803, 806
BccI	CCATC	1 cut(s)	296
BceAI	ACGGC	3 cut(s)	420, 519, 560
BcgI	CGANNNNNNTGC	2 cut(s)	388, 422
BciT130I	CCWGG	4 cut(s)	302, 509, 521, 799
BclI	TGATCA	1 cut(s)	81
BcnI	CCSGG	1 cut(s)	340
BcoDI	GTCTC	1 cut(s)	699
BfoI	RGCGCY	1 cut(s)	707
BisI	GCNGC	9 cut(s)	21, 97, 100, 103, 147, 357, 721, 792, 795
BlsI	GCNGC	9 cut(s)	22, 98, 101, 104, 148, 358, 722, 793, 796
Bme1390I	CCNGG	5 cut(s)	302, 340, 509, 521, 799
Bme18I	GGWCC	3 cut(s)	369, 464, 667
BmgT120I	GGNCC	5 cut(s)	369, 444, 464, 505, 667
BmiI	GGNNCC	5 cut(s)	60, 412, 446, 465, 669
BmrFI	CCNGG	5 cut(s)	302, 340, 509, 521, 799
BmsI	GCATC	2 cut(s)	310, 621
BpiI	GAAGAC	1 cut(s)	221
BpuEI	CTTGAG	1 cut(s)	668
BpuMI	CCSGG	1 cut(s)	340
BsaBI	GATNNNNATC	1 cut(s)	80
BsaI	GGTCTC	1 cut(s)	699
BsaJI	CCNNGG	5 cut(s)	339, 372, 507, 508, 718
BsaXI	ACNNNNNCTCC	2 cut(s)	625, 655
Bsc4I	CCNNNNNNNGG	1 cut(s)	730
Bse118I	RCCGGY	1 cut(s)	428
Bse1I	ACTGG	2 cut(s)	129, 568
Bse8I	GATNNNNATC	1 cut(s)	80
BseBI	CCWGG	4 cut(s)	302, 509, 521, 799
BseDI	CCNNGG	5 cut(s)	339, 372, 507, 508, 718
BseJI	GATNNNNATC	1 cut(s)	80
BseLI	CCNNNNNNNGG	1 cut(s)	730
BseMII	CTCAG	1 cut(s)	662
BseNI	ACTGG	2 cut(s)	129, 568
BseRI	GAGGAG	1 cut(s)	630
BseXI	GCAGC	8 cut(s)	32, 108, 111, 114, 158, 368, 803, 806
Bsh1236I	CGCG	2 cut(s)	351, 720
BshFI	GGCC	4 cut(s)	435, 445, 506, 723
BsiSI	CCGG	2 cut(s)	339, 429
BslFI	GGGAC	1 cut(s)	18
BslI	CCNNNNNNNGG	1 cut(s)	730
BsmAI	GTCTC	1 cut(s)	699
BsmFI	GGGAC	1 cut(s)	18
BsnI	GGCC	4 cut(s)	435, 445, 506, 723
Bso31I	GGTCTC	1 cut(s)	699
Bsp143I	GATC	3 cut(s)	58, 81, 125
BspACI	CCGC	6 cut(s)	252, 449, 598, 691, 718, 720
BspANI	GGCC	4 cut(s)	435, 445, 506, 723
BspCNI	CTCAG	1 cut(s)	661
BspFNI	CGCG	2 cut(s)	351, 720
BspLI	GGNNCC	5 cut(s)	60, 412, 446, 465, 669
BspPI	GGATC	3 cut(s)	53, 66, 120
BspTNI	GGTCTC	1 cut(s)	699
BsrFI	RCCGGY	1 cut(s)	428
BsrI	ACTGG	2 cut(s)	129, 568
BssAI	RCCGGY	1 cut(s)	428
BssECI	CCNNGG	5 cut(s)	339, 372, 507, 508, 718
BssMI	GATC	3 cut(s)	58, 81, 125
BssNAI	GTATAC	1 cut(s)	223
BssT1I	CCWWGG	1 cut(s)	372
Bst1107I	GTATAC	1 cut(s)	223
Bst2UI	CCWGG	4 cut(s)	302, 509, 521, 799
Bst4CI	ACNGT	3 cut(s)	16, 114, 220
BstDEI	CTNAG	3 cut(s)	8, 648, 776
BstDSI	CCRYGG	1 cut(s)	718
BstFNI	CGCG	2 cut(s)	351, 720
BstH2I	RGCGCY	1 cut(s)	707
BstHHI	GCGC	2 cut(s)	351, 706
BstKTI	GATC	3 cut(s)	61, 84, 128
BstMAI	GTCTC	1 cut(s)	699
BstMBI	GATC	3 cut(s)	58, 81, 125
BstMWI	GCNNNNNNNGC	2 cut(s)	102, 146
BstNI	CCWGG	4 cut(s)	302, 509, 521, 799
BstSCI	CCNGG	5 cut(s)	300, 338, 507, 519, 797
BstUI	CGCG	2 cut(s)	351, 720
BstV1I	GCAGC	8 cut(s)	32, 108, 111, 114, 158, 368, 803, 806
BstV2I	GAAGAC	1 cut(s)	221
BstX2I	RGATCY	2 cut(s)	58, 125
BstYI	RGATCY	2 cut(s)	58, 125
BstZ17I	GTATAC	1 cut(s)	223
BsuRI	GGCC	4 cut(s)	435, 445, 506, 723
BtgI	CCRYGG	1 cut(s)	718
BtsI	GCAGTG	1 cut(s)	741
BtsIMutI	CAGTG	1 cut(s)	741
CfoI	GCGC	2 cut(s)	351, 706
Cfr10I	RCCGGY	1 cut(s)	428
Cfr13I	GGNCC	5 cut(s)	369, 444, 464, 505, 667
Cfr42I	CCGCGG	1 cut(s)	721
CseI	GACGC	1 cut(s)	735
DdeI	CTNAG	3 cut(s)	8, 648, 776
DpnI	GATC	3 cut(s)	60, 83, 127
DpnII	GATC	3 cut(s)	58, 81, 125
EaeI	YGGCCR	2 cut(s)	433, 721
Eco130I	CCWWGG	1 cut(s)	372
Eco31I	GGTCTC	1 cut(s)	699
Eco47I	GGWCC	3 cut(s)	369, 464, 667
EcoO109I	RGGNCCY	2 cut(s)	444, 464
EcoRII	CCWGG	4 cut(s)	300, 507, 519, 797
EcoT14I	CCWWGG	1 cut(s)	372
ErhI	CCWWGG	1 cut(s)	372
FaiI	YATR	6 cut(s)	119, 173, 223, 363, 385, 461
FaqI	GGGAC	1 cut(s)	18
FauI	CCCGC	1 cut(s)	456
FbaI	TGATCA	1 cut(s)	81
FblI	GTMKAC	1 cut(s)	222
Fnu4HI	GCNGC	9 cut(s)	21, 97, 100, 103, 147, 357, 721, 792, 795
Fsp4HI	GCNGC	9 cut(s)	21, 97, 100, 103, 147, 357, 721, 792, 795
GlaI	GCGC	2 cut(s)	350, 705
GluI	GCNGC	9 cut(s)	21, 97, 100, 103, 147, 357, 721, 792, 795
HaeII	RGCGCY	1 cut(s)	707
HaeIII	GGCC	4 cut(s)	435, 445, 506, 723
HapII	CCGG	2 cut(s)	339, 429
HgaI	GACGC	1 cut(s)	735
HhaI	GCGC	2 cut(s)	351, 706
Hin6I	GCGC	2 cut(s)	349, 704
HinP1I	GCGC	2 cut(s)	349, 704
HinfI	GANTC	5 cut(s)	182, 244, 271, 637, 728
HpaII	CCGG	2 cut(s)	339, 429
Hpy166II	GTNNAC	2 cut(s)	223, 569
Hpy188I	TCNGA	4 cut(s)	63, 181, 187, 733
Hpy188III	TCNNGA	4 cut(s)	85, 550, 616, 698
Hpy8I	GTNNAC	2 cut(s)	223, 569
HpyAV	CCTTC	3 cut(s)	49, 160, 435
HpyCH4III	ACNGT	3 cut(s)	16, 114, 220
HpyCH4V	TGCA	3 cut(s)	50, 399, 612
HpyF10VI	GCNNNNNNNGC	2 cut(s)	102, 146
HpyF3I	CTNAG	3 cut(s)	8, 648, 776
HspAI	GCGC	2 cut(s)	349, 704
Ksp22I	TGATCA	1 cut(s)	81
KspI	CCGCGG	1 cut(s)	721
Kzo9I	GATC	3 cut(s)	58, 81, 125
LmnI	GCTCC	3 cut(s)	416, 589, 763
Lsp1109I	GCAGC	8 cut(s)	32, 108, 111, 114, 158, 368, 803, 806
LweI	GCATC	2 cut(s)	310, 621
MaeIII	GTNAC	1 cut(s)	33
MalI	GATC	3 cut(s)	60, 83, 127
MboI	GATC	3 cut(s)	58, 81, 125
MboII	GAAGA	3 cut(s)	135, 175, 226
MfeI	CAATTG	1 cut(s)	394
MflI	RGATCY	2 cut(s)	58, 125
MlyI	GAGTC	3 cut(s)	253, 631, 737
MmeI	TCCRAC	1 cut(s)	711
MnlI	CCTC	9 cut(s)	3, 360, 538, 651, 655, 692, 717, 727, 752
MseI	TTAA	2 cut(s)	306, 378
MspA1I	CMGCKG	1 cut(s)	720
MspI	CCGG	2 cut(s)	339, 429
MspR9I	CCNGG	5 cut(s)	302, 340, 509, 521, 799
MunI	CAATTG	1 cut(s)	394
MvaI	CCWGG	4 cut(s)	302, 509, 521, 799
MvnI	CGCG	2 cut(s)	351, 720
MwoI	GCNNNNNNNGC	2 cut(s)	102, 146
NciI	CCSGG	1 cut(s)	340
NdeII	GATC	3 cut(s)	58, 81, 125
NlaIV	GGNNCC	5 cut(s)	60, 412, 446, 465, 669
PasI	CCCWGGG	1 cut(s)	508
PfeI	GAWTC	2 cut(s)	182, 271
PkrI	GCNGC	9 cut(s)	22, 98, 101, 104, 148, 358, 722, 793, 796
PleI	GAGTC	3 cut(s)	252, 631, 736
PpsI	GAGTC	3 cut(s)	252, 631, 736
PpuMI	RGGWCCY	1 cut(s)	464
PsiI	TTATAA	1 cut(s)	363
Psp5II	RGGWCCY	1 cut(s)	464
Psp6I	CCWGG	4 cut(s)	300, 507, 519, 797
PspGI	CCWGG	4 cut(s)	300, 507, 519, 797
PspN4I	GGNNCC	5 cut(s)	60, 412, 446, 465, 669
PspPI	GGNCC	5 cut(s)	369, 444, 464, 505, 667
PspPPI	RGGWCCY	1 cut(s)	464
PsuI	RGATCY	2 cut(s)	58, 125
SacII	CCGCGG	1 cut(s)	721
SaqAI	TTAA	2 cut(s)	306, 378
SatI	GCNGC	9 cut(s)	21, 97, 100, 103, 147, 357, 721, 792, 795
Sau3AI	GATC	3 cut(s)	58, 81, 125
Sau96I	GGNCC	5 cut(s)	369, 444, 464, 505, 667
SchI	GAGTC	3 cut(s)	253, 631, 737
ScrFI	CCNGG	5 cut(s)	302, 340, 509, 521, 799
SfaNI	GCATC	2 cut(s)	310, 621
Sfr303I	CCGCGG	1 cut(s)	721
SgrAI	CRCCGGYG	1 cut(s)	428
SgrBI	CCGCGG	1 cut(s)	721
SinI	GGWCC	3 cut(s)	369, 464, 667
SmlI	CTYRAG	1 cut(s)	683
SmoI	CTYRAG	1 cut(s)	683
SsiI	CCGC	6 cut(s)	252, 449, 598, 691, 718, 720
StyD4I	CCNGG	5 cut(s)	300, 338, 507, 519, 797
StyI	CCWWGG	1 cut(s)	372
TaaI	ACNGT	3 cut(s)	16, 114, 220
TaqI	TCGA	1 cut(s)	615
TauI	GCSGC	1 cut(s)	723
TfiI	GAWTC	2 cut(s)	182, 271
Tru1I	TTAA	2 cut(s)	306, 378
Tru9I	TTAA	2 cut(s)	306, 378
TscAI	CASTG	1 cut(s)	748
TseI	GCWGC	8 cut(s)	20, 96, 99, 102, 146, 356, 791, 794
TspDTI	ATGAA	1 cut(s)	188
TspRI	CASTG	1 cut(s)	748
VpaK11BI	GGWCC	3 cut(s)	369, 464, 667
XapI	RAATTY	2 cut(s)	417, 515
XmiI	GTMKAC	1 cut(s)	222

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.