Rh2BG253000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0006385
Physical Location & Seq
Reverse (-)
26103454 .. 26104335
882 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG253000.1

Sequence Viewer

Length: 882 bp
ATGGGACCGAGTACAGCCGGAGCAAGACTAGGGTTAGGATTAGTGTCTGCACTTGCAAGGCAGAAATTGATGAGAAGGTCCAGTACTTTAGCAGCAGCAGATATATGGGAGAAGAAAAGCATGAAATCGGAATCGGAAACGGAATTGGAATTGAATAAAGAGAAGACTCTATACTTATGTTTCTTTGAGTCGAGTCAATGCGGTGCGGTTGAATACCTGAATCAAGTTATTCGCCCCATCAGATTGAGCCAGGTTAATAGTAATGATGATGCTGATGATATTGCCGTGGAGTTGCGCGAGGCAGTTTATAAGAGGTCCAAGGTTGATTTATGGTATTCCAATTGCAGTCGCTTCGGCTCCAAAATTCTTGTCGCCGGTGGCCGTAGAAGGCCCCCGCCAGACGTTGTGGGTCCCGCTATTAACCGTAGAGATATTTATTGGTTTGACACGACCAGGGGGAAATTCGAGGTTTCCTCCCCAACGAAAACCAAAATCAAGAGCTTCTCAACAGGTAAACTATCCGCGCTGTTGGGGGAGGTGAACCGCAAACTCTATTGCATCGACAATAACCCCTTTAGCATGACTCCTCCCTCTCAGCCTTTTCAGGTATTGGACCCCGAAAACGACCTCAAGTGGCGGCCTCTGGAAGCCCCTCCCTTTATCCGCGGCCAAGAGTCGGAGGCCTTCACTGCGTGTTTTTTGGAGGGGAGCAACAAAATCTTAGGTTGGGTGTGGCATCAGCCTGGAGTGTTTTGCTTTGATGACACCAAGCCTGAAAATGGATGGATAGAGTCACCTTCTTGTCTGGGAAACAGCCGACTATGGGCCTTTCTTCGTCCGCCACCATCATCCCAATCTTGGTGCTTTCAACTTAATGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

293

Amino Acids

33.03

Weight (kDa)

8.73

Isoelectric Point (pI)

56.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 309
AccII CGCG 3 cut(s) 297, 524, 666
AcoI YGGCCR 2 cut(s) 379, 667
AcsI RAATTY 2 cut(s) 363, 461
AdeI CACNNNGTG 1 cut(s) 693
AfaI GTAC 2 cut(s) 13, 85
AfiI CCNNNNNNNGG 4 cut(s) 676, 779, 823, 858
AgsI TTSAA 3 cut(s) 154, 212, 869
AjnI CCWGG 3 cut(s) 249, 452, 742
AluBI AGCT 1 cut(s) 501
AluI AGCT 1 cut(s) 501
AoxI GGCC 6 cut(s) 379, 389, 638, 667, 681, 825
ApeKI GCWGC 2 cut(s) 92, 95
ApoI RAATTY 2 cut(s) 363, 461
ArsI GACNNNNNNTTYG 2 cut(s) 354, 386
AspLEI GCGC 2 cut(s) 297, 526
AspS9I GGNCC 7 cut(s) 5, 78, 315, 390, 410, 613, 825
AsuHPI GGTGA 2 cut(s) 550, 786
AvaII GGWCC 5 cut(s) 5, 78, 315, 410, 613
BarI GAAGNNNNNNTAC 4 cut(s) 67, 99, 155, 187
BbsI GAAGAC 1 cut(s) 170
BbvI GCAGC 2 cut(s) 104, 107
BccI CCATC 3 cut(s) 245, 777, 853
BceAI ACGGC 2 cut(s) 269, 366
BcgI CGANNNNNNTGC 2 cut(s) 334, 368
BciT130I CCWGG 3 cut(s) 251, 454, 744
BfaI CTAG 1 cut(s) 29
BisI GCNGC 4 cut(s) 93, 96, 638, 667
BlsI GCNGC 4 cut(s) 94, 97, 639, 668
BmcAI AGTACT 1 cut(s) 85
Bme1390I CCNGG 3 cut(s) 251, 454, 744
Bme18I GGWCC 5 cut(s) 5, 78, 315, 410, 613
BmgT120I GGNCC 7 cut(s) 5, 78, 315, 390, 410, 613, 825
BmiI GGNNCC 6 cut(s) 6, 358, 392, 411, 412, 615
BmrFI CCNGG 3 cut(s) 251, 454, 744
BmsI GCATC 3 cut(s) 259, 567, 745
BpiI GAAGAC 1 cut(s) 170
BplI GAGNNNNNCTC 2 cut(s) 458, 490
BpmI CTGGAG 1 cut(s) 765
BpuEI CTTGAG 1 cut(s) 614
BsaJI CCNNGG 4 cut(s) 285, 318, 453, 664
Bsc4I CCNNNNNNNGG 4 cut(s) 676, 779, 823, 858
Bse118I RCCGGY 1 cut(s) 374
Bse1I ACTGG 1 cut(s) 81
BseBI CCWGG 3 cut(s) 251, 454, 744
BseDI CCNNGG 4 cut(s) 285, 318, 453, 664
BseGI GGATG 2 cut(s) 788, 848
BseLI CCNNNNNNNGG 4 cut(s) 676, 779, 823, 858
BseMII CTCAG 1 cut(s) 608
BseNI ACTGG 1 cut(s) 81
BseRI GAGGAG 1 cut(s) 576
BseXI GCAGC 2 cut(s) 104, 107
BsgI GTGCAG 1 cut(s) 33
Bsh1236I CGCG 3 cut(s) 297, 524, 666
BshFI GGCC 6 cut(s) 381, 391, 640, 669, 683, 827
BsiSI CCGG 2 cut(s) 18, 375
BslFI GGGAC 2 cut(s) 18, 396
BslI CCNNNNNNNGG 4 cut(s) 676, 779, 823, 858
BsmFI GGGAC 2 cut(s) 18, 396
BsnI GGCC 6 cut(s) 381, 391, 640, 669, 683, 827
BspANI GGCC 6 cut(s) 381, 391, 640, 669, 683, 827
BspCNI CTCAG 1 cut(s) 607
BspFNI CGCG 3 cut(s) 297, 524, 666
BspLI GGNNCC 6 cut(s) 6, 358, 392, 411, 412, 615
BsrFI RCCGGY 1 cut(s) 374
BsrI ACTGG 1 cut(s) 81
BssAI RCCGGY 1 cut(s) 374
BssECI CCNNGG 4 cut(s) 285, 318, 453, 664
BssT1I CCWWGG 1 cut(s) 318
Bst2UI CCWGG 3 cut(s) 251, 454, 744
Bst4CI ACNGT 1 cut(s) 425
BstDEI CTNAG 2 cut(s) 594, 721
BstDSI CCRYGG 2 cut(s) 285, 664
BstF5I GGATG 2 cut(s) 788, 848
BstFNI CGCG 3 cut(s) 297, 524, 666
BstHHI GCGC 2 cut(s) 297, 526
BstMWI GCNNNNNNNGC 1 cut(s) 689
BstNI CCWGG 3 cut(s) 251, 454, 744
BstSCI CCNGG 3 cut(s) 249, 452, 742
BstUI CGCG 3 cut(s) 297, 524, 666
BstV1I GCAGC 2 cut(s) 104, 107
BstV2I GAAGAC 1 cut(s) 170
BsuRI GGCC 6 cut(s) 381, 391, 640, 669, 683, 827
BtgI CCRYGG 2 cut(s) 285, 664
BtsCI GGATG 2 cut(s) 788, 848
BtsI GCAGTG 1 cut(s) 687
BtsIMutI CAGTG 1 cut(s) 687
CfoI GCGC 2 cut(s) 297, 526
Cfr10I RCCGGY 1 cut(s) 374
Cfr13I GGNCC 7 cut(s) 5, 78, 315, 390, 410, 613, 825
Cfr42I CCGCGG 1 cut(s) 667
Csp6I GTAC 2 cut(s) 12, 84
CviAII CATG 2 cut(s) 121, 580
CviQI GTAC 2 cut(s) 12, 84
DdeI CTNAG 2 cut(s) 594, 721
DraIII CACNNNGTG 1 cut(s) 693
EaeI YGGCCR 2 cut(s) 379, 667
EciI GGCGGA 1 cut(s) 828
Eco130I CCWWGG 1 cut(s) 318
Eco147I AGGCCT 1 cut(s) 683
Eco47I GGWCC 5 cut(s) 5, 78, 315, 410, 613
EcoO109I RGGNCCY 2 cut(s) 390, 410
EcoRII CCWGG 3 cut(s) 249, 452, 742
EcoT14I CCWWGG 1 cut(s) 318
ErhI CCWWGG 1 cut(s) 318
FaeI CATG 2 cut(s) 124, 583
FaiI YATR 9 cut(s) 104, 106, 122, 172, 178, 309, 331, 581, 823
FaqI GGGAC 2 cut(s) 18, 396
FatI CATG 2 cut(s) 120, 579
FauI CCCGC 2 cut(s) 402, 421
Fnu4HI GCNGC 4 cut(s) 93, 96, 638, 667
FokI GGATG 2 cut(s) 795, 835
Fsp4HI GCNGC 4 cut(s) 93, 96, 638, 667
FspBI CTAG 1 cut(s) 29
GlaI GCGC 2 cut(s) 296, 525
GluI GCNGC 4 cut(s) 93, 96, 638, 667
GsuI CTGGAG 1 cut(s) 765
HaeIII GGCC 6 cut(s) 381, 391, 640, 669, 683, 827
HapII CCGG 2 cut(s) 18, 375
HhaI GCGC 2 cut(s) 297, 526
Hin1II CATG 2 cut(s) 124, 583
Hin6I GCGC 2 cut(s) 295, 524
HinP1I GCGC 2 cut(s) 295, 524
HinfI GANTC 8 cut(s) 131, 166, 188, 193, 220, 583, 674, 791
HpaII CCGG 2 cut(s) 18, 375
HphI GGTGA 2 cut(s) 550, 786
Hpy166II GTNNAC 2 cut(s) 515, 541
Hpy188I TCNGA 4 cut(s) 130, 136, 242, 679
Hpy188III TCNNGA 2 cut(s) 496, 644
Hpy8I GTNNAC 2 cut(s) 515, 541
HpyAV CCTTC 4 cut(s) 69, 381, 694, 807
HpyCH4III ACNGT 1 cut(s) 425
HpyCH4IV ACGT 1 cut(s) 402
HpyCH4V TGCA 4 cut(s) 50, 56, 345, 558
HpyF10VI GCNNNNNNNGC 1 cut(s) 689
HpyF3I CTNAG 2 cut(s) 594, 721
HpySE526I ACGT 1 cut(s) 402
Hsp92II CATG 2 cut(s) 124, 583
HspAI GCGC 2 cut(s) 295, 524
KflI GGGWCCC 1 cut(s) 410
KspI CCGCGG 1 cut(s) 667
LmnI GCTCC 3 cut(s) 20, 362, 708
Lsp1109I GCAGC 2 cut(s) 104, 107
LweI GCATC 3 cut(s) 259, 567, 745
MaeI CTAG 1 cut(s) 29
MaeII ACGT 1 cut(s) 402
MaeIII GTNAC 1 cut(s) 792
MboII GAAGA 3 cut(s) 124, 175, 824
MfeI CAATTG 1 cut(s) 340
MluCI AATT 6 cut(s) 65, 143, 149, 340, 363, 461
MlyI GAGTC 6 cut(s) 160, 197, 202, 577, 683, 800
MmeI TCCRAC 1 cut(s) 657
MseI TTAA 4 cut(s) 255, 420, 873, 880
MspA1I CMGCKG 1 cut(s) 666
MspI CCGG 2 cut(s) 18, 375
MspR9I CCNGG 3 cut(s) 251, 454, 744
MunI CAATTG 1 cut(s) 340
MvaI CCWGG 3 cut(s) 251, 454, 744
MvnI CGCG 3 cut(s) 297, 524, 666
MwoI GCNNNNNNNGC 1 cut(s) 689
NlaIII CATG 2 cut(s) 124, 583
NlaIV GGNNCC 6 cut(s) 6, 358, 392, 411, 412, 615
NmuCI GTSAC 1 cut(s) 792
PceI AGGCCT 1 cut(s) 683
PfeI GAWTC 2 cut(s) 131, 220
PkrI GCNGC 4 cut(s) 94, 97, 639, 668
PleI GAGTC 6 cut(s) 160, 196, 201, 577, 682, 799
PpsI GAGTC 6 cut(s) 160, 196, 201, 577, 682, 799
PpuMI RGGWCCY 1 cut(s) 410
PsiI TTATAA 1 cut(s) 309
Psp5II RGGWCCY 1 cut(s) 410
Psp6I CCWGG 3 cut(s) 249, 452, 742
PspGI CCWGG 3 cut(s) 249, 452, 742
PspN4I GGNNCC 6 cut(s) 6, 358, 392, 411, 412, 615
PspPI GGNCC 7 cut(s) 5, 78, 315, 390, 410, 613, 825
PspPPI RGGWCCY 1 cut(s) 410
RsaI GTAC 2 cut(s) 13, 85
RsaNI GTAC 2 cut(s) 12, 84
SacII CCGCGG 1 cut(s) 667
SaqAI TTAA 4 cut(s) 255, 420, 873, 880
SatI GCNGC 4 cut(s) 93, 96, 638, 667
Sau96I GGNCC 7 cut(s) 5, 78, 315, 390, 410, 613, 825
ScaI AGTACT 1 cut(s) 85
SchI GAGTC 6 cut(s) 160, 197, 202, 577, 683, 800
ScrFI CCNGG 3 cut(s) 251, 454, 744
SfaNI GCATC 3 cut(s) 259, 567, 745
Sfr303I CCGCGG 1 cut(s) 667
SgrAI CRCCGGYG 1 cut(s) 374
SgrBI CCGCGG 1 cut(s) 667
SinI GGWCC 5 cut(s) 5, 78, 315, 410, 613
SmlI CTYRAG 1 cut(s) 629
SmoI CTYRAG 1 cut(s) 629
Sse9I AATT 6 cut(s) 65, 143, 149, 340, 363, 461
SseBI AGGCCT 1 cut(s) 683
SspMI CTAG 1 cut(s) 29
StuI AGGCCT 1 cut(s) 683
StyD4I CCNGG 3 cut(s) 249, 452, 742
StyI CCWWGG 1 cut(s) 318
TaaI ACNGT 1 cut(s) 425
TaiI ACGT 1 cut(s) 405
TaqI TCGA 3 cut(s) 191, 465, 561
TaqII GACCGA 1 cut(s) 22
TasI AATT 6 cut(s) 65, 143, 149, 340, 363, 461
TatI WGTACW 2 cut(s) 11, 83
TauI GCSGC 2 cut(s) 640, 669
TfiI GAWTC 2 cut(s) 131, 220
Tru1I TTAA 4 cut(s) 255, 420, 873, 880
Tru9I TTAA 4 cut(s) 255, 420, 873, 880
TscAI CASTG 1 cut(s) 694
TseFI GTSAC 1 cut(s) 792
TseI GCWGC 2 cut(s) 92, 95
Tsp45I GTSAC 1 cut(s) 792
TspDTI ATGAA 1 cut(s) 137
TspGWI ACGGA 1 cut(s) 155
TspRI CASTG 1 cut(s) 694
VpaK11BI GGWCC 5 cut(s) 5, 78, 315, 410, 613
XapI RAATTY 2 cut(s) 363, 461
XspI CTAG 1 cut(s) 29
ZrmI AGTACT 1 cut(s) 85
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.