Rh2CG243500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0006385
Physical Location & Seq
Reverse (-)
25537472 .. 25537846
375 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG243500.1

Sequence Viewer

Length: 375 bp
ATGACTCCTCCCTCTCAGCCTTTTCAGGTATTGGACCCCGAAAACGACCTCAAGTGGCGGTCACTGGAAGCGCCTCCCTTTATCCGCGGCAGAGAGTCGGAGGACTTCACTGCGTGTTTTTTGGAGGGGAGCAACAAAATCTTAGGTTGGGTGCGGCATCAGCCCGGAGTGTTTTGCTTTGATGACACCAAGCCTGAAAATGGATGGATAGAGTCACCTTCTTGTCTAGGAAACAGCCTTCCCTTTCTTGACTATGGGCCTTTCTTCGTCCGCCACCATCATCCCAATCTTGGTGCTTTCAACCTAATGTTTAACTATGATCCTGACGATGCACCTCCTCCTTGTATCCGCCTTTTTCATGCCAAACAACTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

124

Amino Acids

14.22

Weight (kDa)

5.19

Isoelectric Point (pI)

64.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 87
AciI CCGC 6 cut(s) 58, 85, 87, 154, 271, 349
AclWI GGATC 1 cut(s) 314
AdeI CACNNNGTG 1 cut(s) 114
AfiI CCNNNNNNNGG 2 cut(s) 200, 290
AgsI TTSAA 1 cut(s) 301
AlwI GGATC 1 cut(s) 314
AoxI GGCC 1 cut(s) 257
AspLEI GCGC 1 cut(s) 73
AspS9I GGNCC 2 cut(s) 34, 257
AsuC2I CCSGG 1 cut(s) 165
AsuHPI GGTGA 1 cut(s) 207
AvaII GGWCC 1 cut(s) 34
BccI CCATC 2 cut(s) 198, 285
BciVI GTATCC 1 cut(s) 356
BcnI CCSGG 1 cut(s) 165
BfaI CTAG 1 cut(s) 227
BfoI RGCGCY 1 cut(s) 74
BfuI GTATCC 1 cut(s) 356
BisI GCNGC 2 cut(s) 88, 155
BlsI GCNGC 2 cut(s) 89, 156
Bme1390I CCNGG 1 cut(s) 165
Bme18I GGWCC 1 cut(s) 34
BmgT120I GGNCC 2 cut(s) 34, 257
BmiI GGNNCC 1 cut(s) 36
BmrFI CCNGG 1 cut(s) 165
BmsI GCATC 2 cut(s) 166, 319
BpuEI CTTGAG 1 cut(s) 35
BpuMI CCSGG 1 cut(s) 165
BsaJI CCNNGG 1 cut(s) 85
Bsc4I CCNNNNNNNGG 2 cut(s) 200, 290
Bse1I ACTGG 1 cut(s) 69
BseDI CCNNGG 1 cut(s) 85
BseGI GGATG 2 cut(s) 209, 280
BseLI CCNNNNNNNGG 2 cut(s) 200, 290
BseMII CTCAG 1 cut(s) 29
BseNI ACTGG 1 cut(s) 69
BseRI GAGGAG 1 cut(s) 327
Bsh1236I CGCG 1 cut(s) 87
BshFI GGCC 1 cut(s) 259
BsiSI CCGG 1 cut(s) 165
BslI CCNNNNNNNGG 2 cut(s) 200, 290
BsnI GGCC 1 cut(s) 259
Bsp143I GATC 1 cut(s) 319
BspACI CCGC 6 cut(s) 58, 85, 87, 154, 271, 349
BspANI GGCC 1 cut(s) 259
BspCNI CTCAG 1 cut(s) 28
BspFNI CGCG 1 cut(s) 87
BspLI GGNNCC 1 cut(s) 36
BspPI GGATC 1 cut(s) 314
BsrI ACTGG 1 cut(s) 69
BssECI CCNNGG 1 cut(s) 85
BssMI GATC 1 cut(s) 319
Bst4CI ACNGT 1 cut(s) 372
BstDEI CTNAG 2 cut(s) 15, 142
BstDSI CCRYGG 1 cut(s) 85
BstF5I GGATG 2 cut(s) 209, 280
BstFNI CGCG 1 cut(s) 87
BstH2I RGCGCY 1 cut(s) 74
BstHHI GCGC 1 cut(s) 73
BstKTI GATC 1 cut(s) 322
BstMBI GATC 1 cut(s) 319
BstMWI GCNNNNNNNGC 1 cut(s) 160
BstSCI CCNGG 1 cut(s) 163
BstUI CGCG 1 cut(s) 87
BsuI GTATCC 1 cut(s) 356
BsuRI GGCC 1 cut(s) 259
BtgI CCRYGG 1 cut(s) 85
BtsCI GGATG 2 cut(s) 209, 280
BtsI GCAGTG 1 cut(s) 108
BtsIMutI CAGTG 2 cut(s) 62, 108
CfoI GCGC 1 cut(s) 73
Cfr13I GGNCC 2 cut(s) 34, 257
Cfr42I CCGCGG 1 cut(s) 88
CviAII CATG 1 cut(s) 359
CviJI RGCY 5 cut(s) 19, 163, 193, 237, 259
CviKI_1 RGCY 5 cut(s) 19, 163, 193, 237, 259
DdeI CTNAG 2 cut(s) 15, 142
DpnI GATC 1 cut(s) 321
DpnII GATC 1 cut(s) 319
DraIII CACNNNGTG 1 cut(s) 114
EciI GGCGGA 2 cut(s) 260, 338
Eco47I GGWCC 1 cut(s) 34
FaeI CATG 1 cut(s) 362
FaiI YATR 3 cut(s) 255, 318, 360
FatI CATG 1 cut(s) 358
Fnu4HI GCNGC 2 cut(s) 88, 155
FokI GGATG 2 cut(s) 216, 267
Fsp4HI GCNGC 2 cut(s) 88, 155
FspBI CTAG 1 cut(s) 227
GlaI GCGC 1 cut(s) 72
GluI GCNGC 2 cut(s) 88, 155
HaeII RGCGCY 1 cut(s) 74
HaeIII GGCC 1 cut(s) 259
HapII CCGG 1 cut(s) 165
HhaI GCGC 1 cut(s) 73
Hin1II CATG 1 cut(s) 362
Hin6I GCGC 1 cut(s) 71
HinP1I GCGC 1 cut(s) 71
HinfI GANTC 3 cut(s) 4, 95, 212
HpaII CCGG 1 cut(s) 165
HphI GGTGA 1 cut(s) 207
Hpy188I TCNGA 1 cut(s) 100
Hpy188III TCNNGA 2 cut(s) 248, 323
HpyAV CCTTC 2 cut(s) 228, 248
HpyCH4III ACNGT 1 cut(s) 372
HpyCH4V TGCA 1 cut(s) 332
HpyF10VI GCNNNNNNNGC 1 cut(s) 160
HpyF3I CTNAG 2 cut(s) 15, 142
Hsp92II CATG 1 cut(s) 362
HspAI GCGC 1 cut(s) 71
KspI CCGCGG 1 cut(s) 88
Kzo9I GATC 1 cut(s) 319
LmnI GCTCC 1 cut(s) 129
LpnPI CCDG 5 cut(s) 11, 50, 178, 207, 336
LweI GCATC 2 cut(s) 166, 319
MaeI CTAG 1 cut(s) 227
MaeIII GTNAC 2 cut(s) 60, 213
MalI GATC 1 cut(s) 321
MboI GATC 1 cut(s) 319
MboII GAAGA 1 cut(s) 256
MlyI GAGTC 2 cut(s) 104, 221
MmeI TCCRAC 1 cut(s) 78
MnlI CCTC 8 cut(s) 18, 22, 59, 84, 94, 118, 345, 348
MseI TTAA 1 cut(s) 312
MspA1I CMGCKG 1 cut(s) 87
MspI CCGG 1 cut(s) 165
MspR9I CCNGG 1 cut(s) 165
MvnI CGCG 1 cut(s) 87
MwoI GCNNNNNNNGC 1 cut(s) 160
NciI CCSGG 1 cut(s) 165
NdeII GATC 1 cut(s) 319
NlaIII CATG 1 cut(s) 362
NlaIV GGNNCC 1 cut(s) 36
NmuCI GTSAC 2 cut(s) 60, 213
PkrI GCNGC 2 cut(s) 89, 156
PleI GAGTC 2 cut(s) 103, 220
PpsI GAGTC 2 cut(s) 103, 220
PspN4I GGNNCC 1 cut(s) 36
PspPI GGNCC 2 cut(s) 34, 257
SacII CCGCGG 1 cut(s) 88
SaqAI TTAA 1 cut(s) 312
SatI GCNGC 2 cut(s) 88, 155
Sau3AI GATC 1 cut(s) 319
Sau96I GGNCC 2 cut(s) 34, 257
SchI GAGTC 2 cut(s) 104, 221
ScrFI CCNGG 1 cut(s) 165
SetI ASST 6 cut(s) 30, 51, 148, 220, 306, 337
SfaNI GCATC 2 cut(s) 166, 319
Sfr303I CCGCGG 1 cut(s) 88
SgrBI CCGCGG 1 cut(s) 88
SinI GGWCC 1 cut(s) 34
SmlI CTYRAG 1 cut(s) 50
SmoI CTYRAG 1 cut(s) 50
SsiI CCGC 6 cut(s) 58, 85, 87, 154, 271, 349
SspMI CTAG 1 cut(s) 227
StyD4I CCNGG 1 cut(s) 163
TaaI ACNGT 1 cut(s) 372
TauI GCSGC 2 cut(s) 90, 157
Tru1I TTAA 1 cut(s) 312
Tru9I TTAA 1 cut(s) 312
TscAI CASTG 2 cut(s) 69, 115
TseFI GTSAC 2 cut(s) 60, 213
Tsp45I GTSAC 2 cut(s) 60, 213
TspDTI ATGAA 1 cut(s) 347
TspRI CASTG 2 cut(s) 69, 115
VpaK11BI GGWCC 1 cut(s) 34
XspI CTAG 1 cut(s) 227
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.