Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0018337.1

Orthogroup ID

OG0006385

Physical Location & Seq

Genomic Coordinates Reverse (-)

31387 .. 32712

Gene Structure 1326 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0018337.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1326 bp

atggaactgagaacagccgcagcaagactagggttaggattagtggctgcactttcaaggcagaaattgatgagaaggtccagtactttagcagcagcagatatatgggagaagaaaagcatgaaatcagaatcggaaatggaattggaattgaataaagagaagattctatacttatgtttctttgagtcgagtcaatgcggtgcggttgaatacctgaatcaagttattcgccccatcagattgagccaggttaatagtaatgatgatgctgatgatattgccgtggagttgcgcgaggcagcttataagaggtccaaggttgatttatggtattccaattgcagtcgcttcggctccaaaattcttgtcgccggtggccgtagaaggccccggccagacgttgtgggtcccgctattaaccgtagagatatttattggtttgacacgaccagggggaaattcgaggtttcctccccaacgaaaaccaaaatcaagagcttctcaacaggtaaactatccgcgctgttgggggagctgaaccgcaaactatattgcatcgacaacaacccctttagcatgactcctccctctcagccttttcaggtattggaccccgaaaacgacctcaagtggcggcctctggaagcccctccctttatccgcggccaagagtcggaggccttcactgcgtgttttttggaggggagcaacaaaatcttaggttgggtgtggcatcagcctggagtgttttgctttgatgacaccaagcctgaaaatggatggatagagtcaccttcttgtctgggaaacagccttccctttcttgactatgggcctttcttcgtccgccaccatcatcccaatcttggtgctttcaacttaatgtttaactatgaacctgacgatgtacctctccttgtatccgcctatttcatgccgaacaactgtgattctttccatcctatcaacaaacctcttcagctgccaaaattgtgttatgaatttcgagggaatgagtatgatgacaccgtctctaccgattttcaatttgtccatctcggagctcaaaaagtctgccttgttttgcacaaattcttctacccatcaacaaggaaggctcaatgtggaaacatggggagtcttcttctcataacatttgaatatgacatcattagtaatactactgtcgactccaaatccaccttggagatccagacccgattgctcgggacccaccgccgtcgatactttaccaggcagctgcgtaagccagatgctacatggaccaacacagcatgcttgactggtgcatttctgatctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

441

Amino Acids

50.33

Weight (kDa)

8.5

Isoelectric Point (pI)

45.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006385)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g10590 FvH4_7g04900 FvH4_7g04900 FvH4_7g06271
rosa_chinensis	RchiOBHm_Chr2g0124211
rosa_laevigata	RLG00000018039 RLG00000018795 RLG00000022953
rosa_multiflora	Rmu_sc0002968.1_g000024 Rmu_sc0005472.1_g000005 Rmu_sc0005949.1_g000011 Rmu_sc0018337.1_g000004
rosa_roxburghii	Rroxscaffold_2G00120080
rosa_rugosa	Rorug02G0249000
rosa_samantha	Rh2AG239400 Rh2AG308700 Rh2BG252900 Rh2BG253000 Rh2BG253300 Rh2BG317700 Rh2CG243500 Rh2CG295800 Rh2DG247300 Rh2DG247400 Rh2DG332700 Rh5CG553900
rosa_wichuraiana	Rw2G018750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	309
AccI	GTMKAC	1 cut(s)	1191
AccII	CGCG	3 cut(s)	297, 524, 666
AclWI	GGATC	1 cut(s)	1207
AcoI	YGGCCR	3 cut(s)	379, 395, 667
AcsI	RAATTY	4 cut(s)	363, 461, 1004, 1094
AcuI	CTGAAG	1 cut(s)	965
AdeI	CACNNNGTG	1 cut(s)	693
AfaI	GTAC	2 cut(s)	85, 912
AfiI	CCNNNNNNNGG	3 cut(s)	676, 779, 869
AgsI	TTSAA	6 cut(s)	57, 154, 212, 880, 1049, 1163
AjnI	CCWGG	4 cut(s)	249, 452, 742, 1256
AluBI	AGCT	6 cut(s)	305, 501, 538, 985, 1067, 1264
AluI	AGCT	6 cut(s)	305, 501, 538, 985, 1067, 1264
Alw21I	GWGCWC	1 cut(s)	1069
Alw26I	GTCTC	1 cut(s)	1039
AlwI	GGATC	1 cut(s)	1207
Ama87I	CYCGRG	1 cut(s)	1229
AoxI	GGCC	7 cut(s)	379, 389, 395, 638, 667, 681, 836
ApeKI	GCWGC	8 cut(s)	20, 47, 92, 95, 302, 985, 1261, 1264
ApoI	RAATTY	4 cut(s)	363, 461, 1004, 1094
ArsI	GACNNNNNNTTYG	2 cut(s)	354, 386
AspLEI	GCGC	2 cut(s)	297, 526
AspS9I	GGNCC	8 cut(s)	78, 315, 390, 410, 613, 836, 1233, 1287
AsuC2I	CCSGG	1 cut(s)	394
AsuHPI	GGTGA	1 cut(s)	786
AvaI	CYCGRG	1 cut(s)	1229
AvaII	GGWCC	6 cut(s)	78, 315, 410, 613, 1233, 1287
BanII	GRGCYC	1 cut(s)	1069
BarI	GAAGNNNNNNTAC	4 cut(s)	67, 99, 155, 187
BbsI	GAAGAC	1 cut(s)	1136
Bbv12I	GWGCWC	1 cut(s)	1069
BbvI	GCAGC	8 cut(s)	32, 34, 104, 107, 314, 972, 1251, 1273
BccI	CCATC	6 cut(s)	245, 777, 864, 969, 1065, 1114
BceAI	ACGGC	3 cut(s)	269, 366, 1227
BcgI	CGANNNNNNTGC	2 cut(s)	334, 368
BciT130I	CCWGG	4 cut(s)	251, 454, 744, 1258
BciVI	GTATCC	1 cut(s)	934
BcnI	CCSGG	1 cut(s)	394
BcoDI	GTCTC	1 cut(s)	1039
BfaI	CTAG	1 cut(s)	29
BfuI	GTATCC	1 cut(s)	934
BmcAI	AGTACT	1 cut(s)	85
Bme1390I	CCNGG	5 cut(s)	251, 394, 454, 744, 1258
Bme18I	GGWCC	6 cut(s)	78, 315, 410, 613, 1233, 1287
BmeT110I	CYCGRG	1 cut(s)	1229
BmgT120I	GGNCC	8 cut(s)	78, 315, 390, 410, 613, 836, 1233, 1287
BmiI	GGNNCC	7 cut(s)	358, 392, 411, 412, 615, 1234, 1235
BmrFI	CCNGG	5 cut(s)	251, 394, 454, 744, 1258
BmsI	GCATC	4 cut(s)	259, 567, 745, 1267
BpiI	GAAGAC	1 cut(s)	1136
BplI	GAGNNNNNCTC	2 cut(s)	458, 490
BpmI	CTGGAG	1 cut(s)	765
BpuEI	CTTGAG	1 cut(s)	614
BpuMI	CCSGG	1 cut(s)	394
BsaJI	CCNNGG	6 cut(s)	285, 318, 392, 453, 664, 1206
Bsc4I	CCNNNNNNNGG	3 cut(s)	676, 779, 869
Bse118I	RCCGGY	1 cut(s)	374
Bse1I	ACTGG	2 cut(s)	81, 1312
BseBI	CCWGG	4 cut(s)	251, 454, 744, 1258
BseDI	CCNNGG	6 cut(s)	285, 318, 392, 453, 664, 1206
BseGI	GGATG	3 cut(s)	788, 859, 961
BseLI	CCNNNNNNNGG	3 cut(s)	676, 779, 869
BseMII	CTCAG	1 cut(s)	608
BseNI	ACTGG	2 cut(s)	81, 1312
BseRI	GAGGAG	1 cut(s)	576
BseXI	GCAGC	8 cut(s)	32, 34, 104, 107, 314, 972, 1251, 1273
BsgI	GTGCAG	1 cut(s)	33
Bsh1236I	CGCG	3 cut(s)	297, 524, 666
BshFI	GGCC	7 cut(s)	381, 391, 397, 640, 669, 683, 838
BsiHKAI	GWGCWC	1 cut(s)	1069
BsiHKCI	CYCGRG	1 cut(s)	1229
BsiSI	CCGG	2 cut(s)	375, 394
BslFI	GGGAC	2 cut(s)	396, 1246
BslI	CCNNNNNNNGG	3 cut(s)	676, 779, 869
BsmAI	GTCTC	1 cut(s)	1039
BsmBI	CGTCTC	1 cut(s)	1039
BsmFI	GGGAC	2 cut(s)	396, 1246
BsnI	GGCC	7 cut(s)	381, 391, 397, 640, 669, 683, 838
BsoBI	CYCGRG	1 cut(s)	1229
Bsp1286I	GDGCHC	1 cut(s)	1069
Bsp143I	GATC	2 cut(s)	1212, 1320
BspANI	GGCC	7 cut(s)	381, 391, 397, 640, 669, 683, 838
BspCNI	CTCAG	1 cut(s)	607
BspFNI	CGCG	3 cut(s)	297, 524, 666
BspLI	GGNNCC	7 cut(s)	358, 392, 411, 412, 615, 1234, 1235
BspPI	GGATC	1 cut(s)	1207
BsrFI	RCCGGY	1 cut(s)	374
BsrI	ACTGG	2 cut(s)	81, 1312
BssAI	RCCGGY	1 cut(s)	374
BssECI	CCNNGG	6 cut(s)	285, 318, 392, 453, 664, 1206
BssMI	GATC	2 cut(s)	1212, 1320
BssT1I	CCWWGG	2 cut(s)	318, 1206
Bst2UI	CCWGG	4 cut(s)	251, 454, 744, 1258
Bst4CI	ACNGT	4 cut(s)	425, 950, 1033, 1189
Bst6I	CTCTTC	1 cut(s)	984
BstC8I	GCNNGC	1 cut(s)	1300
BstDEI	CTNAG	3 cut(s)	8, 594, 721
BstDSI	CCRYGG	2 cut(s)	285, 664
BstF5I	GGATG	3 cut(s)	788, 859, 961
BstFNI	CGCG	3 cut(s)	297, 524, 666
BstHHI	GCGC	2 cut(s)	297, 526
BstKTI	GATC	2 cut(s)	1215, 1323
BstMAI	GTCTC	1 cut(s)	1039
BstMBI	GATC	2 cut(s)	1212, 1320
BstMWI	GCNNNNNNNGC	2 cut(s)	689, 1270
BstNI	CCWGG	4 cut(s)	251, 454, 744, 1258
BstNSI	RCATGY	1 cut(s)	1302
BstSCI	CCNGG	5 cut(s)	249, 392, 452, 742, 1256
BstUI	CGCG	3 cut(s)	297, 524, 666
BstV1I	GCAGC	8 cut(s)	32, 34, 104, 107, 314, 972, 1251, 1273
BstV2I	GAAGAC	1 cut(s)	1136
BstX2I	RGATCY	1 cut(s)	1212
BstYI	RGATCY	1 cut(s)	1212
BsuI	GTATCC	1 cut(s)	934
BsuRI	GGCC	7 cut(s)	381, 391, 397, 640, 669, 683, 838
BtgI	CCRYGG	2 cut(s)	285, 664
BtsCI	GGATG	3 cut(s)	788, 859, 961
BtsI	GCAGTG	1 cut(s)	687
BtsIMutI	CAGTG	1 cut(s)	687
Cac8I	GCNNGC	1 cut(s)	1300
CfoI	GCGC	2 cut(s)	297, 526
Cfr10I	RCCGGY	1 cut(s)	374
Cfr13I	GGNCC	8 cut(s)	78, 315, 390, 410, 613, 836, 1233, 1287
Cfr42I	CCGCGG	1 cut(s)	667
Csp6I	GTAC	2 cut(s)	84, 911
CviAII	CATG	6 cut(s)	121, 580, 937, 1135, 1284, 1299
CviQI	GTAC	2 cut(s)	84, 911
DdeI	CTNAG	3 cut(s)	8, 594, 721
DpnI	GATC	2 cut(s)	1214, 1322
DpnII	GATC	2 cut(s)	1212, 1320
DraIII	CACNNNGTG	1 cut(s)	693
EaeI	YGGCCR	3 cut(s)	379, 395, 667
Eam1104I	CTCTTC	1 cut(s)	984
EarI	CTCTTC	1 cut(s)	984
EciI	GGCGGA	2 cut(s)	839, 916
Ecl136II	GAGCTC	1 cut(s)	1067
Eco130I	CCWWGG	2 cut(s)	318, 1206
Eco147I	AGGCCT	1 cut(s)	683
Eco24I	GRGCYC	1 cut(s)	1069
Eco47I	GGWCC	6 cut(s)	78, 315, 410, 613, 1233, 1287
Eco53kI	GAGCTC	1 cut(s)	1067
Eco57I	CTGAAG	1 cut(s)	965
Eco88I	CYCGRG	1 cut(s)	1229
EcoICRI	GAGCTC	1 cut(s)	1067
EcoO109I	RGGNCCY	3 cut(s)	390, 410, 1233
EcoRII	CCWGG	4 cut(s)	249, 452, 742, 1256
EcoT14I	CCWWGG	2 cut(s)	318, 1206
EcoT38I	GRGCYC	1 cut(s)	1069
ErhI	CCWWGG	2 cut(s)	318, 1206
Esp3I	CGTCTC	1 cut(s)	1039
FaeI	CATG	6 cut(s)	124, 583, 940, 1138, 1287, 1302
FalI	AAGNNNNNCTT	2 cut(s)	1065, 1097
FaqI	GGGAC	2 cut(s)	396, 1246
FatI	CATG	6 cut(s)	120, 579, 936, 1134, 1283, 1298
FauI	CCCGC	1 cut(s)	421
FblI	GTMKAC	1 cut(s)	1191
FokI	GGATG	3 cut(s)	795, 846, 948
FriOI	GRGCYC	1 cut(s)	1069
FspBI	CTAG	1 cut(s)	29
GlaI	GCGC	2 cut(s)	296, 525
GsuI	CTGGAG	1 cut(s)	765
HaeIII	GGCC	7 cut(s)	381, 391, 397, 640, 669, 683, 838
HapII	CCGG	2 cut(s)	375, 394
HhaI	GCGC	2 cut(s)	297, 526
Hin1II	CATG	6 cut(s)	124, 583, 940, 1138, 1287, 1302
Hin6I	GCGC	2 cut(s)	295, 524
HinP1I	GCGC	2 cut(s)	295, 524
HincII	GTYRAC	1 cut(s)	1192
HindII	GTYRAC	1 cut(s)	1192
HpaII	CCGG	2 cut(s)	375, 394
HphI	GGTGA	1 cut(s)	786
Hpy166II	GTNNAC	2 cut(s)	515, 1192
Hpy188I	TCNGA	6 cut(s)	130, 136, 242, 679, 1064, 1320
Hpy188III	TCNNGA	5 cut(s)	496, 644, 827, 1216, 1231
Hpy8I	GTNNAC	2 cut(s)	515, 1192
Hpy99I	CGWCG	1 cut(s)	1248
HpyAV	CCTTC	6 cut(s)	69, 381, 694, 807, 827, 1111
HpyCH4III	ACNGT	4 cut(s)	425, 950, 1033, 1189
HpyCH4IV	ACGT	1 cut(s)	402
HpyCH4V	TGCA	5 cut(s)	50, 345, 558, 1090, 1313
HpyF10VI	GCNNNNNNNGC	2 cut(s)	689, 1270
HpyF3I	CTNAG	3 cut(s)	8, 594, 721
HpySE526I	ACGT	1 cut(s)	402
Hsp92II	CATG	6 cut(s)	124, 583, 940, 1138, 1287, 1302
HspAI	GCGC	2 cut(s)	295, 524
KflI	GGGWCCC	2 cut(s)	410, 1233
KspI	CCGCGG	1 cut(s)	667
Kzo9I	GATC	2 cut(s)	1212, 1320
LmnI	GCTCC	4 cut(s)	362, 535, 708, 1064
Lsp1109I	GCAGC	8 cut(s)	32, 34, 104, 107, 314, 972, 1251, 1273
LweI	GCATC	4 cut(s)	259, 567, 745, 1267
MaeI	CTAG	1 cut(s)	29
MaeII	ACGT	1 cut(s)	402
MaeIII	GTNAC	1 cut(s)	792
MalI	GATC	2 cut(s)	1214, 1322
MboI	GATC	2 cut(s)	1212, 1320
MboII	GAAGA	7 cut(s)	124, 175, 835, 971, 1090, 1136, 1139
MfeI	CAATTG	1 cut(s)	340
MflI	RGATCY	1 cut(s)	1212
MhlI	GDGCHC	1 cut(s)	1069
MlyI	GAGTC	7 cut(s)	197, 202, 577, 683, 800, 1150, 1187
MmeI	TCCRAC	1 cut(s)	657
MseI	TTAA	4 cut(s)	255, 420, 884, 891
MspA1I	CMGCKG	3 cut(s)	666, 985, 1264
MspI	CCGG	2 cut(s)	375, 394
MspR9I	CCNGG	5 cut(s)	251, 394, 454, 744, 1258
MunI	CAATTG	1 cut(s)	340
MvaI	CCWGG	4 cut(s)	251, 454, 744, 1258
MvnI	CGCG	3 cut(s)	297, 524, 666
MwoI	GCNNNNNNNGC	2 cut(s)	689, 1270
NciI	CCSGG	1 cut(s)	394
NdeII	GATC	2 cut(s)	1212, 1320
NlaIII	CATG	6 cut(s)	124, 583, 940, 1138, 1287, 1302
NlaIV	GGNNCC	7 cut(s)	358, 392, 411, 412, 615, 1234, 1235
NmuCI	GTSAC	1 cut(s)	792
NspI	RCATGY	1 cut(s)	1302
PaeI	GCATGC	1 cut(s)	1302
PceI	AGGCCT	1 cut(s)	683
PfeI	GAWTC	4 cut(s)	131, 166, 220, 953
PflFI	GACNNNGTC	1 cut(s)	1031
PleI	GAGTC	7 cut(s)	196, 201, 577, 682, 799, 1149, 1187
PpsI	GAGTC	7 cut(s)	196, 201, 577, 682, 799, 1149, 1187
PpuMI	RGGWCCY	2 cut(s)	410, 1233
PsiI	TTATAA	1 cut(s)	309
Psp124BI	GAGCTC	1 cut(s)	1069
Psp5II	RGGWCCY	2 cut(s)	410, 1233
Psp6I	CCWGG	4 cut(s)	249, 452, 742, 1256
PspGI	CCWGG	4 cut(s)	249, 452, 742, 1256
PspN4I	GGNNCC	7 cut(s)	358, 392, 411, 412, 615, 1234, 1235
PspPI	GGNCC	8 cut(s)	78, 315, 390, 410, 613, 836, 1233, 1287
PspPPI	RGGWCCY	2 cut(s)	410, 1233
PsuI	RGATCY	1 cut(s)	1212
PsyI	GACNNNGTC	1 cut(s)	1031
PvuII	CAGCTG	2 cut(s)	985, 1264
RsaI	GTAC	2 cut(s)	85, 912
RsaNI	GTAC	2 cut(s)	84, 911
SacI	GAGCTC	1 cut(s)	1069
SacII	CCGCGG	1 cut(s)	667
SalI	GTCGAC	1 cut(s)	1190
SaqAI	TTAA	4 cut(s)	255, 420, 884, 891
Sau3AI	GATC	2 cut(s)	1212, 1320
Sau96I	GGNCC	8 cut(s)	78, 315, 390, 410, 613, 836, 1233, 1287
ScaI	AGTACT	1 cut(s)	85
SchI	GAGTC	7 cut(s)	197, 202, 577, 683, 800, 1150, 1187
ScrFI	CCNGG	5 cut(s)	251, 394, 454, 744, 1258
SduI	GDGCHC	1 cut(s)	1069
SfaNI	GCATC	4 cut(s)	259, 567, 745, 1267
Sfr303I	CCGCGG	1 cut(s)	667
SgrAI	CRCCGGYG	1 cut(s)	374
SgrBI	CCGCGG	1 cut(s)	667
SinI	GGWCC	6 cut(s)	78, 315, 410, 613, 1233, 1287
SmlI	CTYRAG	1 cut(s)	629
SmoI	CTYRAG	1 cut(s)	629
SphI	GCATGC	1 cut(s)	1302
SseBI	AGGCCT	1 cut(s)	683
SspMI	CTAG	1 cut(s)	29
SstI	GAGCTC	1 cut(s)	1069
StuI	AGGCCT	1 cut(s)	683
StyD4I	CCNGG	5 cut(s)	249, 392, 452, 742, 1256
StyI	CCWWGG	2 cut(s)	318, 1206
TaaI	ACNGT	4 cut(s)	425, 950, 1033, 1189
TaiI	ACGT	1 cut(s)	405
TaqI	TCGA	6 cut(s)	191, 465, 561, 1009, 1191, 1246
TatI	WGTACW	1 cut(s)	83
TauI	GCSGC	3 cut(s)	20, 640, 669
TfiI	GAWTC	4 cut(s)	131, 166, 220, 953
Tru1I	TTAA	4 cut(s)	255, 420, 884, 891
Tru9I	TTAA	4 cut(s)	255, 420, 884, 891
TscAI	CASTG	1 cut(s)	694
TseFI	GTSAC	1 cut(s)	792
TseI	GCWGC	8 cut(s)	20, 47, 92, 95, 302, 985, 1261, 1264
Tsp45I	GTSAC	1 cut(s)	792
TspDTI	ATGAA	4 cut(s)	137, 912, 925, 1017
TspRI	CASTG	1 cut(s)	694
Tth111I	GACNNNGTC	1 cut(s)	1031
VpaK11BI	GGWCC	6 cut(s)	78, 315, 410, 613, 1233, 1287
XapI	RAATTY	4 cut(s)	363, 461, 1004, 1094
XceI	RCATGY	1 cut(s)	1302
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1204, 1281
XmiI	GTMKAC	1 cut(s)	1191
XspI	CTAG	1 cut(s)	29
ZrmI	AGTACT	1 cut(s)	85

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.