Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002968.1

Orthogroup ID

OG0006385

Physical Location & Seq

Genomic Coordinates Forward (+)

109304 .. 110670

Gene Structure 1367 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002968.1_g000024.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1065 bp

atgggactgaggacagccgcagcaagattagggttagagttagcgagtgcaaggaaggatccgaagcagaaattgatgatgatcaagaaaattagcagcagcagcagcctttcgcagtttatgagaagatccagtagtttagcaagggcagcagatacatgggagaagaaggacgcttcggctcccaaattcttgtcgccggcggccgtagaaggcccccaccagacattatgggtcctgctattggccgtagatatatttattggtttgacacgacccaggggaaattctaggtttcctccccaacgaaaaccaaaatcaagagattctcaacagccttttcaggtattggaccccgaaattgacctcaagtggcgatctctggaagcgcctccctttattcgcggccaagagtcggaggacttcactgcgtgttttttggagggaagcaacaaaatcttaggttgggtgtggcagcagcgtggagtgtttttctttgatgacaccaagcctgaaaatggatggatagagtcaccttcttgtctaggaaacagccttccctttcttgaccatgggcatttcttcgtccgccaccatcatcctaatcttggtgctttcaacataatgtttcactatcatcctgacaatgcacctctccttgtatccacctttttcatgccaaacaactgtgattctttccatcctatcaacaaacctcttcagctgccagaattgtgttatgaatttcgagaggatgagtatgatgacaccttctctaccgattttcaatttgtccatctcggagctcaaaaagtatgccttgttttgcacaaattcttcttcccatcaacagggaaggttcaatgtggaaacatggggagtcttcttctcataacatttgaatatgacgttattagtaatactactgtcgactccaaatccaccttggagatccagacccgatttctcgggacccaccgccgtcgatactttaccaggcagctgcgtaaaccaaattatacatggaccaacacatcatacctgactggtgcatttctgatctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

354

Amino Acids

40.61

Weight (kDa)

8.96

Isoelectric Point (pI)

48.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006385)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g10590 FvH4_7g04900 FvH4_7g04900 FvH4_7g06271
rosa_chinensis	RchiOBHm_Chr2g0124211
rosa_laevigata	RLG00000018039 RLG00000018795 RLG00000022953
rosa_multiflora	Rmu_sc0002968.1_g000024 Rmu_sc0005472.1_g000005 Rmu_sc0005949.1_g000011 Rmu_sc0018337.1_g000004
rosa_roxburghii	Rroxscaffold_2G00120080
rosa_rugosa	Rorug02G0249000
rosa_samantha	Rh2AG239400 Rh2AG308700 Rh2BG252900 Rh2BG253000 Rh2BG253300 Rh2BG317700 Rh2CG243500 Rh2CG295800 Rh2DG247300 Rh2DG247400 Rh2DG332700 Rh5CG553900
rosa_wichuraiana	Rw2G018750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	930
AccII	CGCG	1 cut(s)	405
AciI	CCGC	5 cut(s)	18, 203, 405, 589, 979
AclWI	GGATC	4 cut(s)	53, 66, 123, 946
AcoI	YGGCCR	3 cut(s)	204, 246, 406
AcsI	RAATTY	4 cut(s)	188, 286, 743, 833
AcuI	CTGAAG	1 cut(s)	704
AdeI	CACNNNGTG	1 cut(s)	432
AfiI	CCNNNNNNNGG	5 cut(s)	244, 415, 518, 608, 851
AgsI	TTSAA	4 cut(s)	619, 788, 863, 902
AjnI	CCWGG	2 cut(s)	278, 995
AluBI	AGCT	3 cut(s)	724, 806, 1003
AluI	AGCT	3 cut(s)	724, 806, 1003
Alw21I	GWGCWC	1 cut(s)	808
AlwI	GGATC	4 cut(s)	53, 66, 123, 946
Ama87I	CYCGRG	1 cut(s)	968
AoxI	GGCC	4 cut(s)	204, 214, 246, 406
ApoI	RAATTY	4 cut(s)	188, 286, 743, 833
AspLEI	GCGC	1 cut(s)	391
AspS9I	GGNCC	5 cut(s)	215, 235, 352, 972, 1026
AsuHPI	GGTGA	1 cut(s)	525
AvaI	CYCGRG	1 cut(s)	968
AvaII	GGWCC	4 cut(s)	235, 352, 972, 1026
BamHI	GGATCC	1 cut(s)	58
BanII	GRGCYC	1 cut(s)	808
BbsI	GAAGAC	1 cut(s)	875
Bbv12I	GWGCWC	1 cut(s)	808
BccI	CCATC	5 cut(s)	516, 603, 708, 804, 853
BceAI	ACGGC	3 cut(s)	191, 233, 966
BciT130I	CCWGG	2 cut(s)	280, 997
BciVI	GTATCC	1 cut(s)	673
BclI	TGATCA	1 cut(s)	81
BfaI	CTAG	2 cut(s)	291, 545
BfoI	RGCGCY	1 cut(s)	392
BfuI	GTATCC	1 cut(s)	673
Bme1390I	CCNGG	2 cut(s)	280, 997
Bme18I	GGWCC	4 cut(s)	235, 352, 972, 1026
BmeT110I	CYCGRG	1 cut(s)	968
BmgT120I	GGNCC	5 cut(s)	215, 235, 352, 972, 1026
BmiI	GGNNCC	7 cut(s)	60, 183, 217, 236, 354, 973, 974
BmrFI	CCNGG	2 cut(s)	280, 997
BpiI	GAAGAC	1 cut(s)	875
BpuEI	CTTGAG	1 cut(s)	353
BsaBI	GATNNNNATC	1 cut(s)	80
BsaJI	CCNNGG	4 cut(s)	278, 279, 571, 945
Bsc4I	CCNNNNNNNGG	5 cut(s)	244, 415, 518, 608, 851
Bse118I	RCCGGY	1 cut(s)	199
Bse1I	ACTGG	2 cut(s)	132, 1051
Bse8I	GATNNNNATC	1 cut(s)	80
BseBI	CCWGG	2 cut(s)	280, 997
BseDI	CCNNGG	4 cut(s)	278, 279, 571, 945
BseGI	GGATG	5 cut(s)	527, 598, 637, 700, 760
BseJI	GATNNNNATC	1 cut(s)	80
BseLI	CCNNNNNNNGG	5 cut(s)	244, 415, 518, 608, 851
BseNI	ACTGG	2 cut(s)	132, 1051
BseX3I	CGGCCG	1 cut(s)	204
Bsh1236I	CGCG	1 cut(s)	405
Bsh1285I	CGRYCG	1 cut(s)	207
BshFI	GGCC	4 cut(s)	206, 216, 248, 408
BsiEI	CGRYCG	1 cut(s)	207
BsiHKAI	GWGCWC	1 cut(s)	808
BsiHKCI	CYCGRG	1 cut(s)	968
BsiSI	CCGG	1 cut(s)	200
BslFI	GGGAC	2 cut(s)	18, 985
BslI	CCNNNNNNNGG	5 cut(s)	244, 415, 518, 608, 851
BsmFI	GGGAC	2 cut(s)	18, 985
BsnI	GGCC	4 cut(s)	206, 216, 248, 408
BsoBI	CYCGRG	1 cut(s)	968
Bsp1286I	GDGCHC	1 cut(s)	808
Bsp143I	GATC	6 cut(s)	58, 81, 128, 377, 951, 1059
Bsp19I	CCATGG	1 cut(s)	571
BspACI	CCGC	5 cut(s)	18, 203, 405, 589, 979
BspANI	GGCC	4 cut(s)	206, 216, 248, 408
BspFNI	CGCG	1 cut(s)	405
BspLI	GGNNCC	7 cut(s)	60, 183, 217, 236, 354, 973, 974
BspPI	GGATC	4 cut(s)	53, 66, 123, 946
BsrFI	RCCGGY	1 cut(s)	199
BsrI	ACTGG	2 cut(s)	132, 1051
BssAI	RCCGGY	1 cut(s)	199
BssECI	CCNNGG	4 cut(s)	278, 279, 571, 945
BssMI	GATC	6 cut(s)	58, 81, 128, 377, 951, 1059
BssT1I	CCWWGG	2 cut(s)	571, 945
Bst2UI	CCWGG	2 cut(s)	280, 997
Bst4CI	ACNGT	2 cut(s)	689, 928
Bst6I	CTCTTC	1 cut(s)	723
BstC8I	GCNNGC	1 cut(s)	201
BstDEI	CTNAG	2 cut(s)	8, 460
BstDSI	CCRYGG	1 cut(s)	571
BstF5I	GGATG	5 cut(s)	527, 598, 637, 700, 760
BstFNI	CGCG	1 cut(s)	405
BstH2I	RGCGCY	1 cut(s)	392
BstHHI	GCGC	1 cut(s)	391
BstKTI	GATC	6 cut(s)	61, 84, 131, 380, 954, 1062
BstMBI	GATC	6 cut(s)	58, 81, 128, 377, 951, 1059
BstMCI	CGRYCG	1 cut(s)	207
BstMWI	GCNNNNNNNGC	3 cut(s)	102, 105, 149
BstNI	CCWGG	2 cut(s)	280, 997
BstSCI	CCNGG	2 cut(s)	278, 995
BstUI	CGCG	1 cut(s)	405
BstV2I	GAAGAC	1 cut(s)	875
BstX2I	RGATCY	3 cut(s)	58, 128, 951
BstYI	RGATCY	3 cut(s)	58, 128, 951
BstZI	CGGCCG	1 cut(s)	204
BsuI	GTATCC	1 cut(s)	673
BsuRI	GGCC	4 cut(s)	206, 216, 248, 408
BtgI	CCRYGG	1 cut(s)	571
BtsCI	GGATG	5 cut(s)	527, 598, 637, 700, 760
BtsI	GCAGTG	1 cut(s)	426
BtsIMutI	CAGTG	1 cut(s)	426
Cac8I	GCNNGC	1 cut(s)	201
CfoI	GCGC	1 cut(s)	391
Cfr10I	RCCGGY	1 cut(s)	199
Cfr13I	GGNCC	5 cut(s)	215, 235, 352, 972, 1026
CseI	GACGC	1 cut(s)	182
CviAII	CATG	5 cut(s)	159, 572, 676, 874, 1023
DdeI	CTNAG	2 cut(s)	8, 460
DpnI	GATC	6 cut(s)	60, 83, 130, 379, 953, 1061
DpnII	GATC	6 cut(s)	58, 81, 128, 377, 951, 1059
DraIII	CACNNNGTG	1 cut(s)	432
EaeI	YGGCCR	3 cut(s)	204, 246, 406
EagI	CGGCCG	1 cut(s)	204
Eam1104I	CTCTTC	1 cut(s)	723
EarI	CTCTTC	1 cut(s)	723
EciI	GGCGGA	1 cut(s)	578
Ecl136II	GAGCTC	1 cut(s)	806
EclXI	CGGCCG	1 cut(s)	204
Eco130I	CCWWGG	2 cut(s)	571, 945
Eco24I	GRGCYC	1 cut(s)	808
Eco47I	GGWCC	4 cut(s)	235, 352, 972, 1026
Eco52I	CGGCCG	1 cut(s)	204
Eco53kI	GAGCTC	1 cut(s)	806
Eco57I	CTGAAG	1 cut(s)	704
Eco88I	CYCGRG	1 cut(s)	968
EcoICRI	GAGCTC	1 cut(s)	806
EcoO109I	RGGNCCY	3 cut(s)	215, 235, 972
EcoRII	CCWGG	2 cut(s)	278, 995
EcoT14I	CCWWGG	2 cut(s)	571, 945
EcoT38I	GRGCYC	1 cut(s)	808
ErhI	CCWWGG	2 cut(s)	571, 945
FaeI	CATG	5 cut(s)	162, 575, 679, 877, 1026
FalI	AAGNNNNNCTT	2 cut(s)	804, 836
FaqI	GGGAC	2 cut(s)	18, 985
FatI	CATG	5 cut(s)	158, 571, 675, 873, 1022
FbaI	TGATCA	1 cut(s)	81
FblI	GTMKAC	1 cut(s)	930
FokI	GGATG	5 cut(s)	534, 585, 624, 687, 767
FriOI	GRGCYC	1 cut(s)	808
FspBI	CTAG	2 cut(s)	291, 545
GlaI	GCGC	1 cut(s)	390
HaeII	RGCGCY	1 cut(s)	392
HaeIII	GGCC	4 cut(s)	206, 216, 248, 408
HapII	CCGG	1 cut(s)	200
HgaI	GACGC	1 cut(s)	182
HhaI	GCGC	1 cut(s)	391
Hin1II	CATG	5 cut(s)	162, 575, 679, 877, 1026
Hin6I	GCGC	1 cut(s)	389
HinP1I	GCGC	1 cut(s)	389
HincII	GTYRAC	1 cut(s)	931
HindII	GTYRAC	1 cut(s)	931
HinfI	GANTC	6 cut(s)	326, 413, 530, 692, 880, 932
HpaII	CCGG	1 cut(s)	200
HphI	GGTGA	1 cut(s)	525
Hpy166II	GTNNAC	2 cut(s)	931, 1010
Hpy188I	TCNGA	4 cut(s)	63, 418, 803, 1059
Hpy188III	TCNNGA	8 cut(s)	85, 321, 383, 566, 641, 749, 955, 970
Hpy8I	GTNNAC	2 cut(s)	931, 1010
Hpy99I	CGWCG	1 cut(s)	987
HpyAV	CCTTC	7 cut(s)	49, 163, 206, 546, 566, 781, 850
HpyCH4III	ACNGT	2 cut(s)	689, 928
HpyCH4IV	ACGT	1 cut(s)	909
HpyCH4V	TGCA	4 cut(s)	50, 650, 829, 1052
HpyF10VI	GCNNNNNNNGC	3 cut(s)	102, 105, 149
HpyF3I	CTNAG	2 cut(s)	8, 460
HpySE526I	ACGT	1 cut(s)	909
Hsp92II	CATG	5 cut(s)	162, 575, 679, 877, 1026
HspAI	GCGC	1 cut(s)	389
KflI	GGGWCCC	1 cut(s)	972
KroI	GCCGGC	1 cut(s)	199
KroNI	GCCGGC	1 cut(s)	201
Ksp22I	TGATCA	1 cut(s)	81
Kzo9I	GATC	6 cut(s)	58, 81, 128, 377, 951, 1059
LmnI	GCTCC	2 cut(s)	187, 803
MaeI	CTAG	2 cut(s)	291, 545
MaeII	ACGT	1 cut(s)	909
MaeIII	GTNAC	1 cut(s)	531
MalI	GATC	6 cut(s)	60, 83, 130, 379, 953, 1061
MboI	GATC	6 cut(s)	58, 81, 128, 377, 951, 1059
MboII	GAAGA	8 cut(s)	138, 178, 574, 710, 829, 832, 875, 878
MflI	RGATCY	3 cut(s)	58, 128, 951
MhlI	GDGCHC	1 cut(s)	808
MlyI	GAGTC	4 cut(s)	422, 539, 889, 926
MmeI	TCCRAC	1 cut(s)	396
MnlI	CCTC	9 cut(s)	3, 309, 377, 402, 412, 436, 663, 726, 745
MreI	CGCCGGCG	1 cut(s)	199
MroNI	GCCGGC	1 cut(s)	199
MspA1I	CMGCKG	2 cut(s)	724, 1003
MspI	CCGG	1 cut(s)	200
MspR9I	CCNGG	2 cut(s)	280, 997
MvaI	CCWGG	2 cut(s)	280, 997
MvnI	CGCG	1 cut(s)	405
MwoI	GCNNNNNNNGC	3 cut(s)	102, 105, 149
NaeI	GCCGGC	1 cut(s)	201
NcoI	CCATGG	1 cut(s)	571
NdeII	GATC	6 cut(s)	58, 81, 128, 377, 951, 1059
NgoMIV	GCCGGC	1 cut(s)	199
NlaIII	CATG	5 cut(s)	162, 575, 679, 877, 1026
NlaIV	GGNNCC	7 cut(s)	60, 183, 217, 236, 354, 973, 974
NmuCI	GTSAC	1 cut(s)	531
PasI	CCCWGGG	1 cut(s)	279
PdiI	GCCGGC	1 cut(s)	201
PfeI	GAWTC	2 cut(s)	326, 692
PleI	GAGTC	4 cut(s)	421, 538, 888, 926
PpsI	GAGTC	4 cut(s)	421, 538, 888, 926
PpuMI	RGGWCCY	2 cut(s)	235, 972
Psp124BI	GAGCTC	1 cut(s)	808
Psp5II	RGGWCCY	2 cut(s)	235, 972
Psp6I	CCWGG	2 cut(s)	278, 995
PspGI	CCWGG	2 cut(s)	278, 995
PspN4I	GGNNCC	7 cut(s)	60, 183, 217, 236, 354, 973, 974
PspPI	GGNCC	5 cut(s)	215, 235, 352, 972, 1026
PspPPI	RGGWCCY	2 cut(s)	235, 972
PsuI	RGATCY	3 cut(s)	58, 128, 951
PvuII	CAGCTG	2 cut(s)	724, 1003
SacI	GAGCTC	1 cut(s)	808
SalI	GTCGAC	1 cut(s)	929
Sau3AI	GATC	6 cut(s)	58, 81, 128, 377, 951, 1059
Sau96I	GGNCC	5 cut(s)	215, 235, 352, 972, 1026
SchI	GAGTC	4 cut(s)	422, 539, 889, 926
ScrFI	CCNGG	2 cut(s)	280, 997
SduI	GDGCHC	1 cut(s)	808
SgrAI	CRCCGGYG	1 cut(s)	199
SinI	GGWCC	4 cut(s)	235, 352, 972, 1026
SmlI	CTYRAG	1 cut(s)	368
SmoI	CTYRAG	1 cut(s)	368
SsiI	CCGC	5 cut(s)	18, 203, 405, 589, 979
SspMI	CTAG	2 cut(s)	291, 545
SstI	GAGCTC	1 cut(s)	808
StyD4I	CCNGG	2 cut(s)	278, 995
StyI	CCWWGG	2 cut(s)	571, 945
TaaI	ACNGT	2 cut(s)	689, 928
TaiI	ACGT	1 cut(s)	912
TaqI	TCGA	3 cut(s)	748, 930, 985
TauI	GCSGC	3 cut(s)	20, 206, 408
TfiI	GAWTC	2 cut(s)	326, 692
TscAI	CASTG	1 cut(s)	433
TseFI	GTSAC	1 cut(s)	531
Tsp45I	GTSAC	1 cut(s)	531
TspDTI	ATGAA	2 cut(s)	664, 756
TspRI	CASTG	1 cut(s)	433
VpaK11BI	GGWCC	4 cut(s)	235, 352, 972, 1026
XapI	RAATTY	4 cut(s)	188, 286, 743, 833
XcmI	CCANNNNNNNNNTGG	2 cut(s)	943, 1020
XmiI	GTMKAC	1 cut(s)	930
XspI	CTAG	2 cut(s)	291, 545

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.