Rmu_sc0005472.1_g000005

No description available

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005472.1
Physical Location & Seq
Reverse (-)
26566 .. 30865
4300 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005472.1_g000005.1.cds

Sequence Viewer

Length: 1410 bp
atgatgatcaagaaaattagcagcagcagcagtctttcgcagtttatgagaagatccagtagtttagcaagggcagcagatacatgggagaagaaggtcaatgcatgcggtgctgttgaacacctgaatcaagttattcgccccatcaaattgagccaggttaatagtaatgatgatgatattgctgtggagttgcgcgaagcagcttataagaggtccaaggttaatttatggtattccaattgcagtcgcttcggctcccaaattcttgtcgccggcggccgtagaaggcccccgccagacattatgggtcctgctattgcccgtagagatatttattgggagctgaaccgcaaactctattgcattgagaacaaccccattaacatgactcctccctctcagccttttcaggtattggaccccgaaatcgacctcaagtggcgatctctggaagcgcctccctttatccgcggccaagagtcggaggacttcactgcgtgttttttggaggggagcaacaaaatcataggttgggtgtggcaacagcgtggagtgttttgctttgatgacaccaagcctgaaaatggatggatagagtcaccttcttgtctaggaaacagccttccctttcttgaccatgggcatttcttcgtccgccaccatcatcctaatcttggtgctttcaacataatgtttcactatcatcctgacaatgcacctctccttgtatccacctttttcatgccaaacaactgtgattctttccatcctatcaacaaacctcttcagctgccagaattgtgttatgaatttcgagaggatgagtatgatgacaccttctctaccgattttcaatttgtccatctcggagctcaaaaagtatgccttgttttgcacaaattcttcttcccatcaacagggaaggttcaatgtggaaacatggggagtcttcttctcataacatttgaatatgacgttattagtaatactactgtcgactccaaatccaccttggagatccagacccgatttcgcgggacccaccactgtcgatactttaccaggcagctgcgtaaaccagattatacatggaccaacacatcatttaagatggatacgattgacaagattgaaattgcgactgatggacaaattggctttaactacaggaaacctccattacctgacctttgccccattctaaacttcagtacctcacgtttagaaaatatcagaacggtacctgacgttctaaccccgaccgaagattggtacctggagccgttagctccgttacaaaaactaagagttaaaggatattttcgtcatttcatattcccggaaagattgggatccgaaacggggaaggagttgacggcgaaagtggcggccatgtactgggtctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

469

Amino Acids

54.13

Weight (kDa)

7.2

Isoelectric Point (pI)

48.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 210
Acc65I GGTACC 2 cut(s) 1243, 1275
AccB1I GGYRCC 2 cut(s) 1243, 1275
AccB7I CCANNNNNTGG 1 cut(s) 1401
AccI GTMKAC 1 cut(s) 999
AccII CGCG 3 cut(s) 198, 474, 1038
AciI CCGC 9 cut(s) 108, 279, 296, 352, 472, 474, 658, 1038, 1391
AclWI GGATC 4 cut(s) 48, 1015, 1350, 1363
AcoI YGGCCR 3 cut(s) 280, 475, 1392
AcsI RAATTY 3 cut(s) 264, 812, 902
AcuI CTGAAG 2 cut(s) 773, 1195
AdeI CACNNNGTG 1 cut(s) 501
AfaI GTAC 4 cut(s) 1216, 1245, 1277, 1400
AfiI CCNNNNNNNGG 7 cut(s) 484, 587, 677, 920, 1272, 1365, 1401
AgsI TTSAA 6 cut(s) 119, 688, 857, 932, 971, 1136
AjnI CCWGG 3 cut(s) 156, 1064, 1278
AluBI AGCT 6 cut(s) 206, 346, 793, 875, 1072, 1292
AluI AGCT 6 cut(s) 206, 346, 793, 875, 1072, 1292
Alw21I GWGCWC 1 cut(s) 877
AlwI GGATC 4 cut(s) 48, 1015, 1350, 1363
AoxI GGCC 4 cut(s) 280, 290, 475, 1392
ApeKI GCWGC 8 cut(s) 21, 24, 27, 74, 203, 793, 1069, 1072
ApoI RAATTY 3 cut(s) 264, 812, 902
Asp718I GGTACC 2 cut(s) 1243, 1275
AspLEI GCGC 2 cut(s) 198, 460
AspS9I GGNCC 6 cut(s) 216, 291, 311, 421, 1041, 1095
AsuC2I CCSGG 1 cut(s) 1343
AsuHPI GGTGA 1 cut(s) 594
AvaII GGWCC 5 cut(s) 216, 311, 421, 1041, 1095
BaeI ACNNNNGTAYC 2 cut(s) 1198, 1231
BamHI GGATCC 1 cut(s) 1355
BanI GGYRCC 2 cut(s) 1243, 1275
BanII GRGCYC 1 cut(s) 877
BbsI GAAGAC 1 cut(s) 944
Bbv12I GWGCWC 1 cut(s) 877
BbvI GCAGC 8 cut(s) 33, 36, 39, 86, 215, 780, 1059, 1081
BccI CCATC 8 cut(s) 152, 585, 672, 777, 873, 922, 1108, 1142
BceAI ACGGC 3 cut(s) 267, 1270, 1395
BcgI CGANNNNNNTGC 2 cut(s) 235, 269
BciT130I CCWGG 3 cut(s) 158, 1066, 1280
BciVI GTATCC 2 cut(s) 742, 1111
BclI TGATCA 1 cut(s) 6
BcnI CCSGG 1 cut(s) 1343
BfaI CTAG 1 cut(s) 614
BfmI CTRYAG 1 cut(s) 1168
BfoI RGCGCY 1 cut(s) 461
BfuI GTATCC 2 cut(s) 742, 1111
Bme1390I CCNGG 4 cut(s) 158, 1066, 1280, 1343
Bme18I GGWCC 5 cut(s) 216, 311, 421, 1041, 1095
BmgT120I GGNCC 6 cut(s) 216, 291, 311, 421, 1041, 1095
BmrFI CCNGG 4 cut(s) 158, 1066, 1280, 1343
BpiI GAAGAC 1 cut(s) 944
BpmI CTGGAG 1 cut(s) 1301
BpuEI CTTGAG 1 cut(s) 422
BpuMI CCSGG 1 cut(s) 1343
BsaBI GATNNNNATC 1 cut(s) 1354
BsaJI CCNNGG 4 cut(s) 219, 472, 640, 1014
Bsc4I CCNNNNNNNGG 7 cut(s) 484, 587, 677, 920, 1272, 1365, 1401
Bse118I RCCGGY 1 cut(s) 275
Bse1I ACTGG 2 cut(s) 57, 1406
Bse8I GATNNNNATC 1 cut(s) 1354
BseBI CCWGG 3 cut(s) 158, 1066, 1280
BseDI CCNNGG 4 cut(s) 219, 472, 640, 1014
BseGI GGATG 5 cut(s) 596, 667, 706, 769, 829
BseJI GATNNNNATC 1 cut(s) 1354
BseLI CCNNNNNNNGG 7 cut(s) 484, 587, 677, 920, 1272, 1365, 1401
BseMII CTCAG 1 cut(s) 416
BseNI ACTGG 2 cut(s) 57, 1406
BseRI GAGGAG 1 cut(s) 384
BseX3I CGGCCG 1 cut(s) 280
BseXI GCAGC 8 cut(s) 33, 36, 39, 86, 215, 780, 1059, 1081
Bsh1236I CGCG 3 cut(s) 198, 474, 1038
Bsh1285I CGRYCG 2 cut(s) 283, 1266
BshFI GGCC 4 cut(s) 282, 292, 477, 1394
BshNI GGYRCC 2 cut(s) 1243, 1275
BsiEI CGRYCG 2 cut(s) 283, 1266
BsiHKAI GWGCWC 1 cut(s) 877
BsiSI CCGG 2 cut(s) 276, 1343
BslFI GGGAC 1 cut(s) 1054
BslI CCNNNNNNNGG 7 cut(s) 484, 587, 677, 920, 1272, 1365, 1401
BsmFI GGGAC 1 cut(s) 1054
BsnI GGCC 4 cut(s) 282, 292, 477, 1394
Bsp1286I GDGCHC 1 cut(s) 877
Bsp143I GATC 5 cut(s) 6, 53, 446, 1020, 1355
Bsp19I CCATGG 1 cut(s) 640
BspACI CCGC 9 cut(s) 108, 279, 296, 352, 472, 474, 658, 1038, 1391
BspANI GGCC 4 cut(s) 282, 292, 477, 1394
BspCNI CTCAG 1 cut(s) 415
BspFNI CGCG 3 cut(s) 198, 474, 1038
BspPI GGATC 4 cut(s) 48, 1015, 1350, 1363
BspT107I GGYRCC 2 cut(s) 1243, 1275
BsrFI RCCGGY 1 cut(s) 275
BsrI ACTGG 2 cut(s) 57, 1406
BssAI RCCGGY 1 cut(s) 275
BssECI CCNNGG 4 cut(s) 219, 472, 640, 1014
BssMI GATC 5 cut(s) 6, 53, 446, 1020, 1355
BssT1I CCWWGG 3 cut(s) 219, 640, 1014
Bst2UI CCWGG 3 cut(s) 158, 1066, 1280
Bst4CI ACNGT 4 cut(s) 758, 997, 1052, 1243
Bst6I CTCTTC 1 cut(s) 792
BstAPI GCANNNNNTGC 1 cut(s) 110
BstC8I GCNNGC 2 cut(s) 106, 277
BstDEI CTNAG 2 cut(s) 402, 1307
BstDSI CCRYGG 2 cut(s) 472, 640
BstF5I GGATG 5 cut(s) 596, 667, 706, 769, 829
BstFNI CGCG 3 cut(s) 198, 474, 1038
BstH2I RGCGCY 1 cut(s) 461
BstHHI GCGC 2 cut(s) 198, 460
BstKTI GATC 5 cut(s) 9, 56, 449, 1023, 1358
BstMBI GATC 5 cut(s) 6, 53, 446, 1020, 1355
BstMCI CGRYCG 2 cut(s) 283, 1266
BstMWI GCNNNNNNNGC 4 cut(s) 27, 74, 110, 1388
BstNI CCWGG 3 cut(s) 158, 1066, 1280
BstNSI RCATGY 1 cut(s) 108
BstSCI CCNGG 4 cut(s) 156, 1064, 1278, 1341
BstSFI CTRYAG 1 cut(s) 1168
BstUI CGCG 3 cut(s) 198, 474, 1038
BstV1I GCAGC 8 cut(s) 33, 36, 39, 86, 215, 780, 1059, 1081
BstV2I GAAGAC 1 cut(s) 944
BstX2I RGATCY 3 cut(s) 53, 1020, 1355
BstYI RGATCY 3 cut(s) 53, 1020, 1355
BstZI CGGCCG 1 cut(s) 280
BsuI GTATCC 2 cut(s) 742, 1111
BsuRI GGCC 4 cut(s) 282, 292, 477, 1394
BtgI CCRYGG 2 cut(s) 472, 640
BtsCI GGATG 5 cut(s) 596, 667, 706, 769, 829
BtsI GCAGTG 1 cut(s) 495
BtsIMutI CAGTG 2 cut(s) 495, 1048
Cac8I GCNNGC 2 cut(s) 106, 277
CfoI GCGC 2 cut(s) 198, 460
Cfr10I RCCGGY 1 cut(s) 275
Cfr13I GGNCC 6 cut(s) 216, 291, 311, 421, 1041, 1095
Cfr42I CCGCGG 1 cut(s) 475
Csp6I GTAC 4 cut(s) 1215, 1244, 1276, 1399
CviAII CATG 8 cut(s) 84, 105, 388, 641, 745, 943, 1092, 1396
CviQI GTAC 4 cut(s) 1215, 1244, 1276, 1399
DdeI CTNAG 2 cut(s) 402, 1307
DpnI GATC 5 cut(s) 8, 55, 448, 1022, 1357
DpnII GATC 5 cut(s) 6, 53, 446, 1020, 1355
DraIII CACNNNGTG 1 cut(s) 501
EaeI YGGCCR 3 cut(s) 280, 475, 1392
EagI CGGCCG 1 cut(s) 280
Eam1104I CTCTTC 1 cut(s) 792
EarI CTCTTC 1 cut(s) 792
EciI GGCGGA 1 cut(s) 647
Ecl136II GAGCTC 1 cut(s) 875
EclXI CGGCCG 1 cut(s) 280
Eco130I CCWWGG 3 cut(s) 219, 640, 1014
Eco24I GRGCYC 1 cut(s) 877
Eco47I GGWCC 5 cut(s) 216, 311, 421, 1041, 1095
Eco52I CGGCCG 1 cut(s) 280
Eco53kI GAGCTC 1 cut(s) 875
Eco57I CTGAAG 2 cut(s) 773, 1195
EcoICRI GAGCTC 1 cut(s) 875
EcoO109I RGGNCCY 3 cut(s) 291, 311, 1041
EcoRII CCWGG 3 cut(s) 156, 1064, 1278
EcoT14I CCWWGG 3 cut(s) 219, 640, 1014
EcoT22I ATGCAT 1 cut(s) 106
EcoT38I GRGCYC 1 cut(s) 877
ErhI CCWWGG 3 cut(s) 219, 640, 1014
FaeI CATG 8 cut(s) 87, 108, 391, 644, 748, 946, 1095, 1399
FalI AAGNNNNNCTT 2 cut(s) 873, 905
FaqI GGGAC 1 cut(s) 1054
FatI CATG 8 cut(s) 83, 104, 387, 640, 744, 942, 1091, 1395
FauI CCCGC 2 cut(s) 303, 1031
FbaI TGATCA 1 cut(s) 6
FblI GTMKAC 1 cut(s) 999
FokI GGATG 5 cut(s) 603, 654, 693, 756, 836
FriOI GRGCYC 1 cut(s) 877
FspBI CTAG 1 cut(s) 614
GlaI GCGC 2 cut(s) 197, 459
GsuI CTGGAG 1 cut(s) 1301
HaeII RGCGCY 1 cut(s) 461
HaeIII GGCC 4 cut(s) 282, 292, 477, 1394
HapII CCGG 2 cut(s) 276, 1343
HhaI GCGC 2 cut(s) 198, 460
Hin1II CATG 8 cut(s) 87, 108, 391, 644, 748, 946, 1095, 1399
Hin6I GCGC 2 cut(s) 196, 458
HinP1I GCGC 2 cut(s) 196, 458
HincII GTYRAC 2 cut(s) 1000, 1377
HindII GTYRAC 2 cut(s) 1000, 1377
HinfI GANTC 7 cut(s) 127, 391, 482, 599, 761, 949, 1001
HpaII CCGG 2 cut(s) 276, 1343
HphI GGTGA 1 cut(s) 594
Hpy166II GTNNAC 3 cut(s) 1000, 1079, 1377
Hpy188I TCNGA 4 cut(s) 487, 872, 1238, 1360
Hpy188III TCNNGA 6 cut(s) 10, 452, 635, 710, 818, 1024
Hpy8I GTNNAC 3 cut(s) 1000, 1079, 1377
HpyAV CCTTC 7 cut(s) 88, 282, 615, 635, 850, 919, 1363
HpyCH4III ACNGT 4 cut(s) 758, 997, 1052, 1243
HpyCH4IV ACGT 3 cut(s) 978, 1222, 1251
HpyCH4V TGCA 5 cut(s) 104, 246, 366, 719, 898
HpyF10VI GCNNNNNNNGC 4 cut(s) 27, 74, 110, 1388
HpyF3I CTNAG 2 cut(s) 402, 1307
HpySE526I ACGT 3 cut(s) 978, 1222, 1251
Hsp92II CATG 8 cut(s) 87, 108, 391, 644, 748, 946, 1095, 1399
HspAI GCGC 2 cut(s) 196, 458
KflI GGGWCCC 1 cut(s) 1041
KpnI GGTACC 2 cut(s) 1247, 1279
KroI GCCGGC 1 cut(s) 275
KroNI GCCGGC 1 cut(s) 277
Ksp22I TGATCA 1 cut(s) 6
KspI CCGCGG 1 cut(s) 475
Kzo9I GATC 5 cut(s) 6, 53, 446, 1020, 1355
LmnI GCTCC 6 cut(s) 263, 343, 516, 872, 1282, 1297
Lsp1109I GCAGC 8 cut(s) 33, 36, 39, 86, 215, 780, 1059, 1081
MaeI CTAG 1 cut(s) 614
MaeII ACGT 3 cut(s) 978, 1222, 1251
MaeIII GTNAC 2 cut(s) 600, 1296
MalI GATC 5 cut(s) 8, 55, 448, 1022, 1357
MboI GATC 5 cut(s) 6, 53, 446, 1020, 1355
MboII GAAGA 9 cut(s) 63, 103, 643, 779, 898, 901, 944, 947, 1280
MfeI CAATTG 1 cut(s) 241
MflI RGATCY 3 cut(s) 53, 1020, 1355
MhlI GDGCHC 1 cut(s) 877
MlyI GAGTC 5 cut(s) 385, 491, 608, 958, 995
MmeI TCCRAC 1 cut(s) 465
Mph1103I ATGCAT 1 cut(s) 106
MreI CGCCGGCG 1 cut(s) 275
MroNI GCCGGC 1 cut(s) 275
MseI TTAA 6 cut(s) 162, 225, 384, 1110, 1164, 1314
MslI CAYNNNNRTG 1 cut(s) 386
MspA1I CMGCKG 3 cut(s) 474, 793, 1072
MspI CCGG 2 cut(s) 276, 1343
MspR9I CCNGG 4 cut(s) 158, 1066, 1280, 1343
MunI CAATTG 1 cut(s) 241
MvaI CCWGG 3 cut(s) 158, 1066, 1280
MvnI CGCG 3 cut(s) 198, 474, 1038
MwoI GCNNNNNNNGC 4 cut(s) 27, 74, 110, 1388
NaeI GCCGGC 1 cut(s) 277
NciI CCSGG 1 cut(s) 1343
NcoI CCATGG 1 cut(s) 640
NdeII GATC 5 cut(s) 6, 53, 446, 1020, 1355
NgoMIV GCCGGC 1 cut(s) 275
NlaIII CATG 8 cut(s) 87, 108, 391, 644, 748, 946, 1095, 1399
NmuCI GTSAC 1 cut(s) 600
NsiI ATGCAT 1 cut(s) 106
NspI RCATGY 1 cut(s) 108
PaeI GCATGC 1 cut(s) 108
PdiI GCCGGC 1 cut(s) 277
PfeI GAWTC 2 cut(s) 127, 761
PflMI CCANNNNNTGG 1 cut(s) 1401
PfoI TCCNGGA 1 cut(s) 1341
PleI GAGTC 5 cut(s) 385, 490, 607, 957, 995
PpsI GAGTC 5 cut(s) 385, 490, 607, 957, 995
PpuMI RGGWCCY 2 cut(s) 311, 1041
PsiI TTATAA 1 cut(s) 210
Psp124BI GAGCTC 1 cut(s) 877
Psp5II RGGWCCY 2 cut(s) 311, 1041
Psp6I CCWGG 3 cut(s) 156, 1064, 1278
PspGI CCWGG 3 cut(s) 156, 1064, 1278
PspPI GGNCC 6 cut(s) 216, 291, 311, 421, 1041, 1095
PspPPI RGGWCCY 2 cut(s) 311, 1041
PsrI GAACNNNNNNTAC 2 cut(s) 1236, 1268
PsuI RGATCY 3 cut(s) 53, 1020, 1355
PvuII CAGCTG 2 cut(s) 793, 1072
RsaI GTAC 4 cut(s) 1216, 1245, 1277, 1400
RsaNI GTAC 4 cut(s) 1215, 1244, 1276, 1399
RseI CAYNNNNRTG 1 cut(s) 386
SacI GAGCTC 1 cut(s) 877
SacII CCGCGG 1 cut(s) 475
SalI GTCGAC 1 cut(s) 998
SaqAI TTAA 6 cut(s) 162, 225, 384, 1110, 1164, 1314
Sau3AI GATC 5 cut(s) 6, 53, 446, 1020, 1355
Sau96I GGNCC 6 cut(s) 216, 291, 311, 421, 1041, 1095
SchI GAGTC 5 cut(s) 385, 491, 608, 958, 995
ScrFI CCNGG 4 cut(s) 158, 1066, 1280, 1343
SduI GDGCHC 1 cut(s) 877
SfcI CTRYAG 1 cut(s) 1168
Sfr303I CCGCGG 1 cut(s) 475
SgrAI CRCCGGYG 1 cut(s) 275
SgrBI CCGCGG 1 cut(s) 475
SinI GGWCC 5 cut(s) 216, 311, 421, 1041, 1095
SmiMI CAYNNNNRTG 1 cut(s) 386
SmlI CTYRAG 1 cut(s) 437
SmoI CTYRAG 1 cut(s) 437
SphI GCATGC 1 cut(s) 108
SsiI CCGC 9 cut(s) 108, 279, 296, 352, 472, 474, 658, 1038, 1391
SspMI CTAG 1 cut(s) 614
SstI GAGCTC 1 cut(s) 877
StyD4I CCNGG 4 cut(s) 156, 1064, 1278, 1341
StyI CCWWGG 3 cut(s) 219, 640, 1014
TaaI ACNGT 4 cut(s) 758, 997, 1052, 1243
TaiI ACGT 3 cut(s) 981, 1225, 1254
TaqI TCGA 4 cut(s) 432, 817, 999, 1054
TaqII GACCGA 1 cut(s) 1280
TatI WGTACW 1 cut(s) 1398
TauI GCSGC 3 cut(s) 282, 477, 1394
TfiI GAWTC 2 cut(s) 127, 761
Tru1I TTAA 6 cut(s) 162, 225, 384, 1110, 1164, 1314
Tru9I TTAA 6 cut(s) 162, 225, 384, 1110, 1164, 1314
TscAI CASTG 2 cut(s) 502, 1055
TseFI GTSAC 1 cut(s) 600
TseI GCWGC 8 cut(s) 21, 24, 27, 74, 203, 793, 1069, 1072
Tsp45I GTSAC 1 cut(s) 600
TspDTI ATGAA 3 cut(s) 733, 825, 1324
TspGWI ACGGA 1 cut(s) 1284
TspRI CASTG 2 cut(s) 502, 1055
Van91I CCANNNNNTGG 1 cut(s) 1401
VpaK11BI GGWCC 5 cut(s) 216, 311, 421, 1041, 1095
XapI RAATTY 3 cut(s) 264, 812, 902
XceI RCATGY 1 cut(s) 108
XcmI CCANNNNNNNNNTGG 2 cut(s) 1012, 1089
XmiI GTMKAC 1 cut(s) 999
XspI CTAG 1 cut(s) 614
Zsp2I ATGCAT 1 cut(s) 106
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.