RLG00000022953

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0006385
Physical Location & Seq
Forward (+)
15791820 .. 15793201
1382 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000022953

Sequence Viewer

Length: 1296 bp
ATGGAACTGAGGACAGCTGCAACAAGATTAGGGTTAGAATTAGCGAGTGCAAGGAAGGATACGAAGCAGAAATTGATGATGATCAAGAAAATTAGCAGCAGCAGCCTTTCGCAGTTTATGAGAAGATCCAGTAGTTTAGCAAGGGCAGCAGATACATGGGAGAAGAAGGGCATGAAATCGGAATCGGAAATGGAAATGGAATTGGAATTGAATAAGGAGAAGACTGTATACTTATGTTTCTTTGAGTCGAGTCAATGCGGTGCTGTTGAATACCTGAATCAAGTTATTCGCCCCATCAGATTGAGCCAGGTTAATAGTAATGATGATGCTGATGATATTGCCGTGGAGTTGCGCGAAGCAGCTTATAAGAGGTCCAAGGTTAATTTATGGTATTCCAATTGCAGTCGCTTCGGCTCCCAAATTCTTGTTGCCGGCGGTCGTAGAAGGCCCCGCCATTCGTTGTGGATCCTGCTATTAGCCGTAGAGATATTTATTGGTTTGACACGACCCAGGGGAAATTCCAGGTTTCCTCCCCAACGAAAACCAAAATCAAGAGCTTCTCAACAGCCTTTTCAGGTATTGGACCCCGAAAACGACCTCAACTGGCGGTCTCTGGAAGCGCCTCCCTTTATCCGCGGCCAAGAGTCGGAGGACTTCACTGCTTGTTTTTTGGAGGGGAGCGACAAAATCTTAGGGTGGGTGTGGCAGCAGCTTGGAGTGTTTTGCTTTGATGACACCAAGCCTGAAAATGGATGGATAGAGTCACCTTCTTGTCTGGGAAACAGCCTTCCCTCTCTTGACCATGGGCTTTTCTTCGTCCGCCATCATCATCCCAATCTTGGTGCTTTCAACATAACGTTTCACTATGATCCTGACAATGCACCTCTCCTTGTATCCACCTTTTTCATGCCAAACAACTGTGATTCTTTCCATCCTATGAACAAACCTCTTCAGCTGCCAGAATTGTGTTATGAATTTCGAGAGGATGAGTATGATGACACCTTCTCTACCGATTTTCAATTTGTCCATCTCGGAGCTCAAAAAGTTTGCCTTGTTTTGCACAAATTCTTCTTCCCATCAACAAGGAAGGTTCAATGTGGAAACATGGGGAGTCTTCTTCTCATAACATTTGAATATGACGTTATTAGTAATACTACTGTTGACTCTAAATCCACCTTGGAGATCCAGACCCGATTGCTCGGGACCCACCGCCGTCGATACTTTACCAGGCAGCTGCGTAAACCAGATTACACATGGACCAACACATCATACCTGACTGGTGCATTTCTGATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

432

Amino Acids

49.69

Weight (kDa)

8.25

Isoelectric Point (pI)

49.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 366
AccI GTMKAC 1 cut(s) 228
AccII CGCG 2 cut(s) 354, 636
AciI CCGC 8 cut(s) 258, 435, 451, 607, 634, 636, 820, 1210
AclI AACGTT 1 cut(s) 857
AclWI GGATC 5 cut(s) 120, 460, 473, 863, 1177
AcoI YGGCCR 1 cut(s) 637
AcsI RAATTY 4 cut(s) 420, 517, 974, 1064
AcuI CTGAAG 1 cut(s) 935
AfiI CCNNNNNNNGG 3 cut(s) 646, 749, 839
AgsI TTSAA 6 cut(s) 211, 269, 850, 1019, 1094, 1133
AjnI CCWGG 4 cut(s) 306, 509, 521, 1226
AluBI AGCT 7 cut(s) 17, 362, 557, 712, 955, 1037, 1234
AluI AGCT 7 cut(s) 17, 362, 557, 712, 955, 1037, 1234
Alw21I GWGCWC 1 cut(s) 1039
Alw26I GTCTC 1 cut(s) 615
AlwI GGATC 5 cut(s) 120, 460, 473, 863, 1177
Ama87I CYCGRG 1 cut(s) 1199
AoxI GGCC 2 cut(s) 446, 637
ApoI RAATTY 4 cut(s) 420, 517, 974, 1064
AspLEI GCGC 2 cut(s) 354, 622
AspS9I GGNCC 5 cut(s) 372, 447, 583, 1203, 1257
AsuHPI GGTGA 1 cut(s) 756
AvaI CYCGRG 1 cut(s) 1199
AvaII GGWCC 4 cut(s) 372, 583, 1203, 1257
BamHI GGATCC 1 cut(s) 465
BanII GRGCYC 1 cut(s) 1039
BarI GAAGNNNNNNTAC 2 cut(s) 212, 244
BbsI GAAGAC 2 cut(s) 227, 1106
Bbv12I GWGCWC 1 cut(s) 1039
BccI CCATC 6 cut(s) 302, 747, 831, 939, 1035, 1084
BceAI ACGGC 3 cut(s) 326, 464, 1197
BcgI CGANNNNNNTGC 2 cut(s) 391, 425
BciT130I CCWGG 4 cut(s) 308, 511, 523, 1228
BciVI GTATCC 2 cut(s) 52, 904
BclI TGATCA 1 cut(s) 81
BcoDI GTCTC 1 cut(s) 615
BfoI RGCGCY 1 cut(s) 623
BfuI GTATCC 2 cut(s) 52, 904
Bme1390I CCNGG 4 cut(s) 308, 511, 523, 1228
Bme18I GGWCC 4 cut(s) 372, 583, 1203, 1257
BmeT110I CYCGRG 1 cut(s) 1199
BmgT120I GGNCC 5 cut(s) 372, 447, 583, 1203, 1257
BmiI GGNNCC 6 cut(s) 415, 449, 467, 585, 1204, 1205
BmrFI CCNGG 4 cut(s) 308, 511, 523, 1228
BmsI GCATC 1 cut(s) 316
BpiI GAAGAC 2 cut(s) 227, 1106
BsaBI GATNNNNATC 1 cut(s) 80
BsaI GGTCTC 1 cut(s) 615
BsaJI CCNNGG 7 cut(s) 342, 375, 509, 510, 634, 802, 1176
Bsc4I CCNNNNNNNGG 3 cut(s) 646, 749, 839
Bse118I RCCGGY 1 cut(s) 431
Bse1I ACTGG 3 cut(s) 129, 608, 1282
Bse8I GATNNNNATC 1 cut(s) 80
BseBI CCWGG 4 cut(s) 308, 511, 523, 1228
BseDI CCNNGG 7 cut(s) 342, 375, 509, 510, 634, 802, 1176
BseGI GGATG 4 cut(s) 758, 829, 931, 991
BseJI GATNNNNATC 1 cut(s) 80
BseLI CCNNNNNNNGG 3 cut(s) 646, 749, 839
BseNI ACTGG 3 cut(s) 129, 608, 1282
Bsh1236I CGCG 2 cut(s) 354, 636
Bsh1285I CGRYCG 1 cut(s) 439
BshFI GGCC 2 cut(s) 448, 639
BsiEI CGRYCG 1 cut(s) 439
BsiHKAI GWGCWC 1 cut(s) 1039
BsiHKCI CYCGRG 1 cut(s) 1199
BsiSI CCGG 1 cut(s) 432
BslFI GGGAC 1 cut(s) 1216
BslI CCNNNNNNNGG 3 cut(s) 646, 749, 839
BsmAI GTCTC 1 cut(s) 615
BsmFI GGGAC 1 cut(s) 1216
BsnI GGCC 2 cut(s) 448, 639
Bso31I GGTCTC 1 cut(s) 615
BsoBI CYCGRG 1 cut(s) 1199
Bsp1286I GDGCHC 1 cut(s) 1039
Bsp143I GATC 6 cut(s) 81, 125, 465, 868, 1182, 1290
Bsp19I CCATGG 1 cut(s) 802
BspACI CCGC 8 cut(s) 258, 435, 451, 607, 634, 636, 820, 1210
BspANI GGCC 2 cut(s) 448, 639
BspFNI CGCG 2 cut(s) 354, 636
BspLI GGNNCC 6 cut(s) 415, 449, 467, 585, 1204, 1205
BspPI GGATC 5 cut(s) 120, 460, 473, 863, 1177
BspTNI GGTCTC 1 cut(s) 615
BsrFI RCCGGY 1 cut(s) 431
BsrI ACTGG 3 cut(s) 129, 608, 1282
BssAI RCCGGY 1 cut(s) 431
BssECI CCNNGG 7 cut(s) 342, 375, 509, 510, 634, 802, 1176
BssMI GATC 6 cut(s) 81, 125, 465, 868, 1182, 1290
BssNAI GTATAC 1 cut(s) 229
BssT1I CCWWGG 3 cut(s) 375, 802, 1176
Bst1107I GTATAC 1 cut(s) 229
Bst2UI CCWGG 4 cut(s) 308, 511, 523, 1228
Bst4CI ACNGT 3 cut(s) 226, 920, 1159
Bst6I CTCTTC 1 cut(s) 954
BstC8I GCNNGC 1 cut(s) 433
BstDEI CTNAG 2 cut(s) 8, 691
BstDSI CCRYGG 3 cut(s) 342, 634, 802
BstF5I GGATG 4 cut(s) 758, 829, 931, 991
BstFNI CGCG 2 cut(s) 354, 636
BstH2I RGCGCY 1 cut(s) 623
BstHHI GCGC 2 cut(s) 354, 622
BstKTI GATC 6 cut(s) 84, 128, 468, 871, 1185, 1293
BstMAI GTCTC 1 cut(s) 615
BstMBI GATC 6 cut(s) 81, 125, 465, 868, 1182, 1290
BstMCI CGRYCG 1 cut(s) 439
BstMWI GCNNNNNNNGC 2 cut(s) 102, 146
BstNI CCWGG 4 cut(s) 308, 511, 523, 1228
BstSCI CCNGG 4 cut(s) 306, 509, 521, 1226
BstUI CGCG 2 cut(s) 354, 636
BstV2I GAAGAC 2 cut(s) 227, 1106
BstX2I RGATCY 3 cut(s) 125, 465, 1182
BstYI RGATCY 3 cut(s) 125, 465, 1182
BstZ17I GTATAC 1 cut(s) 229
BsuI GTATCC 2 cut(s) 52, 904
BsuRI GGCC 2 cut(s) 448, 639
BtgI CCRYGG 3 cut(s) 342, 634, 802
BtsCI GGATG 4 cut(s) 758, 829, 931, 991
BtsI GCAGTG 1 cut(s) 657
BtsIMutI CAGTG 1 cut(s) 657
Cac8I GCNNGC 1 cut(s) 433
CfoI GCGC 2 cut(s) 354, 622
Cfr10I RCCGGY 1 cut(s) 431
Cfr13I GGNCC 5 cut(s) 372, 447, 583, 1203, 1257
Cfr42I CCGCGG 1 cut(s) 637
CviAII CATG 6 cut(s) 156, 172, 803, 907, 1105, 1254
DdeI CTNAG 2 cut(s) 8, 691
DpnI GATC 6 cut(s) 83, 127, 467, 870, 1184, 1292
DpnII GATC 6 cut(s) 81, 125, 465, 868, 1182, 1290
EaeI YGGCCR 1 cut(s) 637
Eam1104I CTCTTC 1 cut(s) 954
EarI CTCTTC 1 cut(s) 954
EciI GGCGGA 1 cut(s) 809
Ecl136II GAGCTC 1 cut(s) 1037
Eco130I CCWWGG 3 cut(s) 375, 802, 1176
Eco24I GRGCYC 1 cut(s) 1039
Eco31I GGTCTC 1 cut(s) 615
Eco47I GGWCC 4 cut(s) 372, 583, 1203, 1257
Eco53kI GAGCTC 1 cut(s) 1037
Eco57I CTGAAG 1 cut(s) 935
Eco88I CYCGRG 1 cut(s) 1199
EcoICRI GAGCTC 1 cut(s) 1037
EcoO109I RGGNCCY 2 cut(s) 447, 1203
EcoRII CCWGG 4 cut(s) 306, 509, 521, 1226
EcoT14I CCWWGG 3 cut(s) 375, 802, 1176
EcoT38I GRGCYC 1 cut(s) 1039
ErhI CCWWGG 3 cut(s) 375, 802, 1176
FaeI CATG 6 cut(s) 159, 175, 806, 910, 1108, 1257
FalI AAGNNNNNCTT 2 cut(s) 1035, 1067
FaqI GGGAC 1 cut(s) 1216
FatI CATG 6 cut(s) 155, 171, 802, 906, 1104, 1253
FauI CCCGC 1 cut(s) 458
FbaI TGATCA 1 cut(s) 81
FblI GTMKAC 1 cut(s) 228
FokI GGATG 4 cut(s) 765, 816, 918, 998
FriOI GRGCYC 1 cut(s) 1039
GlaI GCGC 2 cut(s) 353, 621
HaeII RGCGCY 1 cut(s) 623
HaeIII GGCC 2 cut(s) 448, 639
HapII CCGG 1 cut(s) 432
HhaI GCGC 2 cut(s) 354, 622
Hin1II CATG 6 cut(s) 159, 175, 806, 910, 1108, 1257
Hin6I GCGC 2 cut(s) 352, 620
HinP1I GCGC 2 cut(s) 352, 620
HincII GTYRAC 1 cut(s) 1162
HindII GTYRAC 1 cut(s) 1162
HinfI GANTC 9 cut(s) 182, 245, 250, 277, 644, 761, 923, 1111, 1163
HpaII CCGG 1 cut(s) 432
HphI GGTGA 1 cut(s) 756
Hpy166II GTNNAC 3 cut(s) 229, 1162, 1241
Hpy188I TCNGA 6 cut(s) 181, 187, 299, 649, 1034, 1290
Hpy188III TCNNGA 8 cut(s) 85, 552, 614, 797, 872, 980, 1186, 1201
Hpy8I GTNNAC 3 cut(s) 229, 1162, 1241
Hpy99I CGWCG 1 cut(s) 1218
HpyAV CCTTC 7 cut(s) 49, 160, 438, 777, 797, 1012, 1081
HpyCH4III ACNGT 3 cut(s) 226, 920, 1159
HpyCH4IV ACGT 2 cut(s) 857, 1140
HpyCH4V TGCA 6 cut(s) 20, 50, 402, 881, 1060, 1283
HpyF10VI GCNNNNNNNGC 2 cut(s) 102, 146
HpyF3I CTNAG 2 cut(s) 8, 691
HpySE526I ACGT 2 cut(s) 857, 1140
Hsp92II CATG 6 cut(s) 159, 175, 806, 910, 1108, 1257
HspAI GCGC 2 cut(s) 352, 620
KflI GGGWCCC 1 cut(s) 1203
KroI GCCGGC 1 cut(s) 431
KroNI GCCGGC 1 cut(s) 433
Ksp22I TGATCA 1 cut(s) 81
KspI CCGCGG 1 cut(s) 637
Kzo9I GATC 6 cut(s) 81, 125, 465, 868, 1182, 1290
LmnI GCTCC 3 cut(s) 419, 678, 1034
LweI GCATC 1 cut(s) 316
MaeII ACGT 2 cut(s) 857, 1140
MaeIII GTNAC 1 cut(s) 762
MalI GATC 6 cut(s) 83, 127, 467, 870, 1184, 1292
MboI GATC 6 cut(s) 81, 125, 465, 868, 1182, 1290
MboII GAAGA 9 cut(s) 135, 175, 232, 805, 941, 1060, 1063, 1106, 1109
MfeI CAATTG 1 cut(s) 397
MflI RGATCY 3 cut(s) 125, 465, 1182
MhlI GDGCHC 1 cut(s) 1039
MlyI GAGTC 6 cut(s) 254, 259, 653, 770, 1120, 1157
MmeI TCCRAC 1 cut(s) 627
MroNI GCCGGC 1 cut(s) 431
MseI TTAA 2 cut(s) 312, 381
MspA1I CMGCKG 4 cut(s) 17, 636, 955, 1234
MspI CCGG 1 cut(s) 432
MspR9I CCNGG 4 cut(s) 308, 511, 523, 1228
MunI CAATTG 1 cut(s) 397
MvaI CCWGG 4 cut(s) 308, 511, 523, 1228
MvnI CGCG 2 cut(s) 354, 636
MwoI GCNNNNNNNGC 2 cut(s) 102, 146
NaeI GCCGGC 1 cut(s) 433
NcoI CCATGG 1 cut(s) 802
NdeII GATC 6 cut(s) 81, 125, 465, 868, 1182, 1290
NgoMIV GCCGGC 1 cut(s) 431
NlaIII CATG 6 cut(s) 159, 175, 806, 910, 1108, 1257
NlaIV GGNNCC 6 cut(s) 415, 449, 467, 585, 1204, 1205
NmuCI GTSAC 1 cut(s) 762
PasI CCCWGGG 1 cut(s) 510
PdiI GCCGGC 1 cut(s) 433
PfeI GAWTC 3 cut(s) 182, 277, 923
PleI GAGTC 6 cut(s) 253, 258, 652, 769, 1119, 1157
PpsI GAGTC 6 cut(s) 253, 258, 652, 769, 1119, 1157
PpuMI RGGWCCY 1 cut(s) 1203
PsiI TTATAA 1 cut(s) 366
Psp124BI GAGCTC 1 cut(s) 1039
Psp1406I AACGTT 1 cut(s) 857
Psp5II RGGWCCY 1 cut(s) 1203
Psp6I CCWGG 4 cut(s) 306, 509, 521, 1226
PspGI CCWGG 4 cut(s) 306, 509, 521, 1226
PspN4I GGNNCC 6 cut(s) 415, 449, 467, 585, 1204, 1205
PspPI GGNCC 5 cut(s) 372, 447, 583, 1203, 1257
PspPPI RGGWCCY 1 cut(s) 1203
PsuI RGATCY 3 cut(s) 125, 465, 1182
PvuII CAGCTG 3 cut(s) 17, 955, 1234
SacI GAGCTC 1 cut(s) 1039
SacII CCGCGG 1 cut(s) 637
SaqAI TTAA 2 cut(s) 312, 381
Sau3AI GATC 6 cut(s) 81, 125, 465, 868, 1182, 1290
Sau96I GGNCC 5 cut(s) 372, 447, 583, 1203, 1257
SchI GAGTC 6 cut(s) 254, 259, 653, 770, 1120, 1157
ScrFI CCNGG 4 cut(s) 308, 511, 523, 1228
SduI GDGCHC 1 cut(s) 1039
SfaNI GCATC 1 cut(s) 316
Sfr303I CCGCGG 1 cut(s) 637
SgrBI CCGCGG 1 cut(s) 637
SinI GGWCC 4 cut(s) 372, 583, 1203, 1257
SsiI CCGC 8 cut(s) 258, 435, 451, 607, 634, 636, 820, 1210
SstI GAGCTC 1 cut(s) 1039
StyD4I CCNGG 4 cut(s) 306, 509, 521, 1226
StyI CCWWGG 3 cut(s) 375, 802, 1176
TaaI ACNGT 3 cut(s) 226, 920, 1159
TaiI ACGT 2 cut(s) 860, 1143
TaqI TCGA 3 cut(s) 248, 979, 1216
TauI GCSGC 1 cut(s) 639
TfiI GAWTC 3 cut(s) 182, 277, 923
Tru1I TTAA 2 cut(s) 312, 381
Tru9I TTAA 2 cut(s) 312, 381
TscAI CASTG 1 cut(s) 664
TseFI GTSAC 1 cut(s) 762
Tsp45I GTSAC 1 cut(s) 762
TspDTI ATGAA 4 cut(s) 188, 895, 953, 987
TspRI CASTG 1 cut(s) 664
VpaK11BI GGWCC 4 cut(s) 372, 583, 1203, 1257
XapI RAATTY 4 cut(s) 420, 517, 974, 1064
XcmI CCANNNNNNNNNTGG 1 cut(s) 1251
XmiI GTMKAC 1 cut(s) 228
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.