Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005949.1

Orthogroup ID

OG0006385

Physical Location & Seq

Genomic Coordinates Reverse (-)

48860 .. 50313

Gene Structure 1454 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005949.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1209 bp

atggaactgagaacagccgcagcaagactagggttaggattagtggctgcactttcaaggcagaaattgatgagaagtcaatgcggtgcggttgaatacctgaatcaagttattcgccccatcagattgagccaggttaatagtaatgatgatgctgatgatattgccgtggagttgcgcgaggcagcttataagaggtccaaggttgatttatggtattccaattgcagtcgcttcggctccaaaattcttgtcgccggtggccgtagaaggccccggccagacgttgtgggtcccgctattaaccgtagagatatttattggtttgacacgaccagggggaaattcgaggtttcctccccaacgaaaaccaaaatcaagagcttctcaacaggtaaactatccgcgctgttgggggagctgaaccgcaaactatattgcatcgacaacaacccctttagcatgactcctccctctcagccttttcaggtattggaccccgaaaacgacctcaagtggcggcctctggaagcccctccctttatccgcggccaagagtcggaggccttcactgcgtgttttttggaggggagcaacaaaatcttaggttgggtgtggcatcagcctggagtgttttgctttgatgacaccaagcctgaaaatggatggatagagtcaccttcttgtctgggaaacagccttccctttcttgactatgggcctttcttcgtccgccaccatcatcccaatcttggtgctttcaacttaatgtttaactatgaacctgacgatgtacctctccttgtatccgcctatttcatgccgaacaactgtgattctttccatcctatcaacaaacctcttcagctgccaaaattgtgttatgaatttcgagggaatgagtatgatgacaccgtctctaccgattttcaatttgtccatctcggagctcaaaaagtctgccttgttttgcacaaattcttctacccatcaacaaggaaggctcaatgtggaaacatggggagtcttcttctcataacatttgaatatgacatcattagtaatactactgtcgactccaaatccaccttggagatccagacccgattgctcgggacccaccgccgtcgatactttaccaggcagctgcgtaagccagatgctacatggaccaacacagcatgcctgactggtgcatttctgatctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

402

Amino Acids

45.76

Weight (kDa)

8.78

Isoelectric Point (pI)

44.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006385)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g10590 FvH4_7g04900 FvH4_7g04900 FvH4_7g06271
rosa_chinensis	RchiOBHm_Chr2g0124211
rosa_laevigata	RLG00000018039 RLG00000018795 RLG00000022953
rosa_multiflora	Rmu_sc0002968.1_g000024 Rmu_sc0005472.1_g000005 Rmu_sc0005949.1_g000011 Rmu_sc0018337.1_g000004
rosa_roxburghii	Rroxscaffold_2G00120080
rosa_rugosa	Rorug02G0249000
rosa_samantha	Rh2AG239400 Rh2AG308700 Rh2BG252900 Rh2BG253000 Rh2BG253300 Rh2BG317700 Rh2CG243500 Rh2CG295800 Rh2DG247300 Rh2DG247400 Rh2DG332700 Rh5CG553900
rosa_wichuraiana	Rw2G018750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	192
AccI	GTMKAC	1 cut(s)	1074
AccII	CGCG	3 cut(s)	180, 407, 549
AclWI	GGATC	1 cut(s)	1090
AcoI	YGGCCR	3 cut(s)	262, 278, 550
AcsI	RAATTY	4 cut(s)	246, 344, 887, 977
AcuI	CTGAAG	1 cut(s)	848
AdeI	CACNNNGTG	1 cut(s)	576
AfaI	GTAC	1 cut(s)	795
AfiI	CCNNNNNNNGG	3 cut(s)	559, 662, 752
AgsI	TTSAA	5 cut(s)	57, 95, 763, 932, 1046
AjnI	CCWGG	4 cut(s)	132, 335, 625, 1139
AluBI	AGCT	6 cut(s)	188, 384, 421, 868, 950, 1147
AluI	AGCT	6 cut(s)	188, 384, 421, 868, 950, 1147
Alw21I	GWGCWC	1 cut(s)	952
Alw26I	GTCTC	1 cut(s)	922
AlwI	GGATC	1 cut(s)	1090
Ama87I	CYCGRG	1 cut(s)	1112
AoxI	GGCC	7 cut(s)	262, 272, 278, 521, 550, 564, 719
ApeKI	GCWGC	6 cut(s)	20, 47, 185, 868, 1144, 1147
ApoI	RAATTY	4 cut(s)	246, 344, 887, 977
ArsI	GACNNNNNNTTYG	2 cut(s)	237, 269
AspLEI	GCGC	2 cut(s)	180, 409
AspS9I	GGNCC	7 cut(s)	198, 273, 293, 496, 719, 1116, 1170
AsuC2I	CCSGG	1 cut(s)	277
AsuHPI	GGTGA	1 cut(s)	669
AvaI	CYCGRG	1 cut(s)	1112
AvaII	GGWCC	5 cut(s)	198, 293, 496, 1116, 1170
BanII	GRGCYC	1 cut(s)	952
BbsI	GAAGAC	1 cut(s)	1019
Bbv12I	GWGCWC	1 cut(s)	952
BbvI	GCAGC	6 cut(s)	32, 34, 197, 855, 1134, 1156
BccI	CCATC	6 cut(s)	128, 660, 747, 852, 948, 997
BceAI	ACGGC	3 cut(s)	152, 249, 1110
BcgI	CGANNNNNNTGC	2 cut(s)	217, 251
BciT130I	CCWGG	4 cut(s)	134, 337, 627, 1141
BciVI	GTATCC	1 cut(s)	817
BcnI	CCSGG	1 cut(s)	277
BcoDI	GTCTC	1 cut(s)	922
BfaI	CTAG	1 cut(s)	29
BfuI	GTATCC	1 cut(s)	817
BisI	GCNGC	9 cut(s)	18, 21, 48, 186, 521, 550, 869, 1145, 1148
BlsI	GCNGC	9 cut(s)	19, 22, 49, 187, 522, 551, 870, 1146, 1149
Bme1390I	CCNGG	5 cut(s)	134, 277, 337, 627, 1141
Bme18I	GGWCC	5 cut(s)	198, 293, 496, 1116, 1170
BmeT110I	CYCGRG	1 cut(s)	1112
BmgT120I	GGNCC	7 cut(s)	198, 273, 293, 496, 719, 1116, 1170
BmiI	GGNNCC	7 cut(s)	241, 275, 294, 295, 498, 1117, 1118
BmrFI	CCNGG	5 cut(s)	134, 277, 337, 627, 1141
BmsI	GCATC	4 cut(s)	142, 450, 628, 1150
BpiI	GAAGAC	1 cut(s)	1019
BplI	GAGNNNNNCTC	2 cut(s)	341, 373
BpmI	CTGGAG	1 cut(s)	648
BpuEI	CTTGAG	1 cut(s)	497
BpuMI	CCSGG	1 cut(s)	277
BsaJI	CCNNGG	6 cut(s)	168, 201, 275, 336, 547, 1089
Bsc4I	CCNNNNNNNGG	3 cut(s)	559, 662, 752
Bse118I	RCCGGY	1 cut(s)	257
Bse1I	ACTGG	1 cut(s)	1195
BseBI	CCWGG	4 cut(s)	134, 337, 627, 1141
BseDI	CCNNGG	6 cut(s)	168, 201, 275, 336, 547, 1089
BseGI	GGATG	3 cut(s)	671, 742, 844
BseLI	CCNNNNNNNGG	3 cut(s)	559, 662, 752
BseMII	CTCAG	1 cut(s)	491
BseNI	ACTGG	1 cut(s)	1195
BseRI	GAGGAG	1 cut(s)	459
BseXI	GCAGC	6 cut(s)	32, 34, 197, 855, 1134, 1156
BsgI	GTGCAG	1 cut(s)	33
Bsh1236I	CGCG	3 cut(s)	180, 407, 549
BshFI	GGCC	7 cut(s)	264, 274, 280, 523, 552, 566, 721
BsiHKAI	GWGCWC	1 cut(s)	952
BsiHKCI	CYCGRG	1 cut(s)	1112
BsiSI	CCGG	2 cut(s)	258, 277
BslFI	GGGAC	2 cut(s)	279, 1129
BslI	CCNNNNNNNGG	3 cut(s)	559, 662, 752
BsmAI	GTCTC	1 cut(s)	922
BsmBI	CGTCTC	1 cut(s)	922
BsmFI	GGGAC	2 cut(s)	279, 1129
BsnI	GGCC	7 cut(s)	264, 274, 280, 523, 552, 566, 721
BsoBI	CYCGRG	1 cut(s)	1112
Bsp1286I	GDGCHC	1 cut(s)	952
Bsp143I	GATC	2 cut(s)	1095, 1203
BspANI	GGCC	7 cut(s)	264, 274, 280, 523, 552, 566, 721
BspCNI	CTCAG	1 cut(s)	490
BspFNI	CGCG	3 cut(s)	180, 407, 549
BspLI	GGNNCC	7 cut(s)	241, 275, 294, 295, 498, 1117, 1118
BspPI	GGATC	1 cut(s)	1090
BsrFI	RCCGGY	1 cut(s)	257
BsrI	ACTGG	1 cut(s)	1195
BssAI	RCCGGY	1 cut(s)	257
BssECI	CCNNGG	6 cut(s)	168, 201, 275, 336, 547, 1089
BssMI	GATC	2 cut(s)	1095, 1203
BssT1I	CCWWGG	2 cut(s)	201, 1089
Bst2UI	CCWGG	4 cut(s)	134, 337, 627, 1141
Bst4CI	ACNGT	4 cut(s)	308, 833, 916, 1072
Bst6I	CTCTTC	1 cut(s)	867
BstC8I	GCNNGC	1 cut(s)	1183
BstDEI	CTNAG	3 cut(s)	8, 477, 604
BstDSI	CCRYGG	2 cut(s)	168, 547
BstF5I	GGATG	3 cut(s)	671, 742, 844
BstFNI	CGCG	3 cut(s)	180, 407, 549
BstHHI	GCGC	2 cut(s)	180, 409
BstKTI	GATC	2 cut(s)	1098, 1206
BstMAI	GTCTC	1 cut(s)	922
BstMBI	GATC	2 cut(s)	1095, 1203
BstMWI	GCNNNNNNNGC	2 cut(s)	572, 1153
BstNI	CCWGG	4 cut(s)	134, 337, 627, 1141
BstNSI	RCATGY	1 cut(s)	1185
BstSCI	CCNGG	5 cut(s)	132, 275, 335, 625, 1139
BstUI	CGCG	3 cut(s)	180, 407, 549
BstV1I	GCAGC	6 cut(s)	32, 34, 197, 855, 1134, 1156
BstV2I	GAAGAC	1 cut(s)	1019
BstX2I	RGATCY	1 cut(s)	1095
BstYI	RGATCY	1 cut(s)	1095
BsuI	GTATCC	1 cut(s)	817
BsuRI	GGCC	7 cut(s)	264, 274, 280, 523, 552, 566, 721
BtgI	CCRYGG	2 cut(s)	168, 547
BtsCI	GGATG	3 cut(s)	671, 742, 844
BtsI	GCAGTG	1 cut(s)	570
BtsIMutI	CAGTG	1 cut(s)	570
Cac8I	GCNNGC	1 cut(s)	1183
CfoI	GCGC	2 cut(s)	180, 409
Cfr10I	RCCGGY	1 cut(s)	257
Cfr13I	GGNCC	7 cut(s)	198, 273, 293, 496, 719, 1116, 1170
Cfr42I	CCGCGG	1 cut(s)	550
Csp6I	GTAC	1 cut(s)	794
CviAII	CATG	5 cut(s)	463, 820, 1018, 1167, 1182
CviQI	GTAC	1 cut(s)	794
DdeI	CTNAG	3 cut(s)	8, 477, 604
DpnI	GATC	2 cut(s)	1097, 1205
DpnII	GATC	2 cut(s)	1095, 1203
DraIII	CACNNNGTG	1 cut(s)	576
EaeI	YGGCCR	3 cut(s)	262, 278, 550
Eam1104I	CTCTTC	1 cut(s)	867
EarI	CTCTTC	1 cut(s)	867
EciI	GGCGGA	2 cut(s)	722, 799
Ecl136II	GAGCTC	1 cut(s)	950
Eco130I	CCWWGG	2 cut(s)	201, 1089
Eco147I	AGGCCT	1 cut(s)	566
Eco24I	GRGCYC	1 cut(s)	952
Eco47I	GGWCC	5 cut(s)	198, 293, 496, 1116, 1170
Eco53kI	GAGCTC	1 cut(s)	950
Eco57I	CTGAAG	1 cut(s)	848
Eco88I	CYCGRG	1 cut(s)	1112
EcoICRI	GAGCTC	1 cut(s)	950
EcoO109I	RGGNCCY	3 cut(s)	273, 293, 1116
EcoRII	CCWGG	4 cut(s)	132, 335, 625, 1139
EcoT14I	CCWWGG	2 cut(s)	201, 1089
EcoT38I	GRGCYC	1 cut(s)	952
ErhI	CCWWGG	2 cut(s)	201, 1089
Esp3I	CGTCTC	1 cut(s)	922
FaeI	CATG	5 cut(s)	466, 823, 1021, 1170, 1185
FalI	AAGNNNNNCTT	2 cut(s)	948, 980
FaqI	GGGAC	2 cut(s)	279, 1129
FatI	CATG	5 cut(s)	462, 819, 1017, 1166, 1181
FauI	CCCGC	1 cut(s)	304
FblI	GTMKAC	1 cut(s)	1074
Fnu4HI	GCNGC	9 cut(s)	18, 21, 48, 186, 521, 550, 869, 1145, 1148
FokI	GGATG	3 cut(s)	678, 729, 831
FriOI	GRGCYC	1 cut(s)	952
Fsp4HI	GCNGC	9 cut(s)	18, 21, 48, 186, 521, 550, 869, 1145, 1148
FspBI	CTAG	1 cut(s)	29
GlaI	GCGC	2 cut(s)	179, 408
GluI	GCNGC	9 cut(s)	18, 21, 48, 186, 521, 550, 869, 1145, 1148
GsuI	CTGGAG	1 cut(s)	648
HaeIII	GGCC	7 cut(s)	264, 274, 280, 523, 552, 566, 721
HapII	CCGG	2 cut(s)	258, 277
HhaI	GCGC	2 cut(s)	180, 409
Hin1II	CATG	5 cut(s)	466, 823, 1021, 1170, 1185
Hin6I	GCGC	2 cut(s)	178, 407
HinP1I	GCGC	2 cut(s)	178, 407
HincII	GTYRAC	1 cut(s)	1075
HindII	GTYRAC	1 cut(s)	1075
HinfI	GANTC	7 cut(s)	103, 466, 557, 674, 836, 1024, 1076
HpaII	CCGG	2 cut(s)	258, 277
HphI	GGTGA	1 cut(s)	669
Hpy166II	GTNNAC	2 cut(s)	398, 1075
Hpy188I	TCNGA	4 cut(s)	125, 562, 947, 1203
Hpy188III	TCNNGA	5 cut(s)	379, 527, 710, 1099, 1114
Hpy8I	GTNNAC	2 cut(s)	398, 1075
Hpy99I	CGWCG	1 cut(s)	1131
HpyAV	CCTTC	5 cut(s)	264, 577, 690, 710, 994
HpyCH4III	ACNGT	4 cut(s)	308, 833, 916, 1072
HpyCH4IV	ACGT	1 cut(s)	285
HpyCH4V	TGCA	5 cut(s)	50, 228, 441, 973, 1196
HpyF10VI	GCNNNNNNNGC	2 cut(s)	572, 1153
HpyF3I	CTNAG	3 cut(s)	8, 477, 604
HpySE526I	ACGT	1 cut(s)	285
Hsp92II	CATG	5 cut(s)	466, 823, 1021, 1170, 1185
HspAI	GCGC	2 cut(s)	178, 407
KflI	GGGWCCC	2 cut(s)	293, 1116
KspI	CCGCGG	1 cut(s)	550
Kzo9I	GATC	2 cut(s)	1095, 1203
LmnI	GCTCC	4 cut(s)	245, 418, 591, 947
Lsp1109I	GCAGC	6 cut(s)	32, 34, 197, 855, 1134, 1156
LweI	GCATC	4 cut(s)	142, 450, 628, 1150
MaeI	CTAG	1 cut(s)	29
MaeII	ACGT	1 cut(s)	285
MaeIII	GTNAC	1 cut(s)	675
MalI	GATC	2 cut(s)	1097, 1205
MboI	GATC	2 cut(s)	1095, 1203
MboII	GAAGA	5 cut(s)	718, 854, 973, 1019, 1022
MfeI	CAATTG	1 cut(s)	223
MflI	RGATCY	1 cut(s)	1095
MhlI	GDGCHC	1 cut(s)	952
MluCI	AATT	8 cut(s)	65, 223, 246, 344, 875, 887, 932, 977
MlyI	GAGTC	5 cut(s)	460, 566, 683, 1033, 1070
MmeI	TCCRAC	1 cut(s)	540
MseI	TTAA	4 cut(s)	138, 303, 767, 774
MspA1I	CMGCKG	3 cut(s)	549, 868, 1147
MspI	CCGG	2 cut(s)	258, 277
MspR9I	CCNGG	5 cut(s)	134, 277, 337, 627, 1141
MunI	CAATTG	1 cut(s)	223
MvaI	CCWGG	4 cut(s)	134, 337, 627, 1141
MvnI	CGCG	3 cut(s)	180, 407, 549
MwoI	GCNNNNNNNGC	2 cut(s)	572, 1153
NciI	CCSGG	1 cut(s)	277
NdeII	GATC	2 cut(s)	1095, 1203
NlaIII	CATG	5 cut(s)	466, 823, 1021, 1170, 1185
NlaIV	GGNNCC	7 cut(s)	241, 275, 294, 295, 498, 1117, 1118
NmuCI	GTSAC	1 cut(s)	675
NspI	RCATGY	1 cut(s)	1185
PaeI	GCATGC	1 cut(s)	1185
PceI	AGGCCT	1 cut(s)	566
PfeI	GAWTC	2 cut(s)	103, 836
PflFI	GACNNNGTC	1 cut(s)	914
PkrI	GCNGC	9 cut(s)	19, 22, 49, 187, 522, 551, 870, 1146, 1149
PleI	GAGTC	5 cut(s)	460, 565, 682, 1032, 1070
PpsI	GAGTC	5 cut(s)	460, 565, 682, 1032, 1070
PpuMI	RGGWCCY	2 cut(s)	293, 1116
PsiI	TTATAA	1 cut(s)	192
Psp124BI	GAGCTC	1 cut(s)	952
Psp5II	RGGWCCY	2 cut(s)	293, 1116
Psp6I	CCWGG	4 cut(s)	132, 335, 625, 1139
PspGI	CCWGG	4 cut(s)	132, 335, 625, 1139
PspN4I	GGNNCC	7 cut(s)	241, 275, 294, 295, 498, 1117, 1118
PspPI	GGNCC	7 cut(s)	198, 273, 293, 496, 719, 1116, 1170
PspPPI	RGGWCCY	2 cut(s)	293, 1116
PsuI	RGATCY	1 cut(s)	1095
PsyI	GACNNNGTC	1 cut(s)	914
PvuII	CAGCTG	2 cut(s)	868, 1147
RsaI	GTAC	1 cut(s)	795
RsaNI	GTAC	1 cut(s)	794
SacI	GAGCTC	1 cut(s)	952
SacII	CCGCGG	1 cut(s)	550
SalI	GTCGAC	1 cut(s)	1073
SaqAI	TTAA	4 cut(s)	138, 303, 767, 774
SatI	GCNGC	9 cut(s)	18, 21, 48, 186, 521, 550, 869, 1145, 1148
Sau3AI	GATC	2 cut(s)	1095, 1203
Sau96I	GGNCC	7 cut(s)	198, 273, 293, 496, 719, 1116, 1170
SchI	GAGTC	5 cut(s)	460, 566, 683, 1033, 1070
ScrFI	CCNGG	5 cut(s)	134, 277, 337, 627, 1141
SduI	GDGCHC	1 cut(s)	952
SfaNI	GCATC	4 cut(s)	142, 450, 628, 1150
Sfr303I	CCGCGG	1 cut(s)	550
SgrAI	CRCCGGYG	1 cut(s)	257
SgrBI	CCGCGG	1 cut(s)	550
SinI	GGWCC	5 cut(s)	198, 293, 496, 1116, 1170
SmlI	CTYRAG	1 cut(s)	512
SmoI	CTYRAG	1 cut(s)	512
SphI	GCATGC	1 cut(s)	1185
Sse9I	AATT	8 cut(s)	65, 223, 246, 344, 875, 887, 932, 977
SseBI	AGGCCT	1 cut(s)	566
SspMI	CTAG	1 cut(s)	29
SstI	GAGCTC	1 cut(s)	952
StuI	AGGCCT	1 cut(s)	566
StyD4I	CCNGG	5 cut(s)	132, 275, 335, 625, 1139
StyI	CCWWGG	2 cut(s)	201, 1089
TaaI	ACNGT	4 cut(s)	308, 833, 916, 1072
TaiI	ACGT	1 cut(s)	288
TaqI	TCGA	5 cut(s)	348, 444, 892, 1074, 1129
TasI	AATT	8 cut(s)	65, 223, 246, 344, 875, 887, 932, 977
TauI	GCSGC	3 cut(s)	20, 523, 552
TfiI	GAWTC	2 cut(s)	103, 836
Tru1I	TTAA	4 cut(s)	138, 303, 767, 774
Tru9I	TTAA	4 cut(s)	138, 303, 767, 774
TscAI	CASTG	1 cut(s)	577
TseFI	GTSAC	1 cut(s)	675
TseI	GCWGC	6 cut(s)	20, 47, 185, 868, 1144, 1147
Tsp45I	GTSAC	1 cut(s)	675
TspDTI	ATGAA	3 cut(s)	795, 808, 900
TspRI	CASTG	1 cut(s)	577
Tth111I	GACNNNGTC	1 cut(s)	914
VpaK11BI	GGWCC	5 cut(s)	198, 293, 496, 1116, 1170
XapI	RAATTY	4 cut(s)	246, 344, 887, 977
XceI	RCATGY	1 cut(s)	1185
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1087, 1164
XmiI	GTMKAC	1 cut(s)	1074
XspI	CTAG	1 cut(s)	29

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.