Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0006385

Physical Location & Seq

Genomic Coordinates Reverse (-)

36345954 .. 36347354

Gene Structure 1401 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000018795

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1401 bp

ATGGGACTGAGGATAGCCGCAGCAAGATTAGTAGGGTTAGAATTAGCGAGTGCAAGGAAGGATCCGAAGCAGAAATTGATGATGATCAAGAAAATTAGCAGCAGCAGCAGCAGCAGCCTTTCGCAGTTTATGAGAAGATCCAGTAGTTTAGCAAGGGCAGCAGATACATGGGAGAAGAAGGGTATGAAATCGGAATCGGGATCGGAATCGGAAATGGAAATGGAATTGGAATTGAATAAGGAGAAGACTGTATACTTATGTTTCTTTGAGTCGAGTCAATGCGGTGCTGTTGAATACCTGAATCAAGTTATTCGCCCCATCAAATTGAGCCAGGTTAATAATAGTAATGATGATATTGCCGGGGAGTTGCGCGAAGCAGCTTATAAGAGGTCCAAGGTTAATTTATGGTATTCCAATTGCAGTCGCTTCGGCTCCCAAATTCTTATCGCCGGCGGCCGTAGAAGGCCCCCGCCAGACGTTATGGGTCCTGCTATCGCCCGTAGAGATATTTATTGGTTTGACACGGCCCAGGGGAAATTCCAGGTTTCCTCCCCAACGAAAACCAAAATCAAGAGCTTCTCAACAGGTAAACAAGCCGTGCTGTTGGGGGAGCTGAACCGCAAACTCTATTGCATCGAGAACGACCCCTTTAGCATGACTCCTCCCTCTCAGCCTTTTCAGGTATTGGACCCCGAAAACGACCTCAAGTGGCGGTCTCTGGAAGCGCCTCCCTTTATCCGCGGCCAAGAGTCGGAGGACTTCACTGCGTCTTTTTTGGAGGGGAGCAACAAAATCTTAGGTTGGGTGTGGCAGCAGCCTGGAGTGTTTTGCTTTGATGACACCAAGCCTGAAAATGGATGGATAGAGTCACCTTCTTGTCTGGGAAACAGCCTTCCCTTTCTTGACCATGGGCATTTCTTCGTCCGCCACCATCATCCCAATCTTGGTGATTTCAACATAATGTTTCACTATCATCCTGACAATGCACCTCTCCTTGTATCCACCTTTTTCATGCCAAACAACTGTGATTCTTTCCATCCTATCAACAAACCTCTTCAGCTGCCAGAATTGTGTTATGAATTTCGAGAGGATGAGTATGATGACACCTTCTCTACCGATTTTCAATTTGTCCATCTCGGAGCTCAAAAAGTATGCCTTGTTTTGCACAAATTCTTCTCCCCATCAACAGGGGAGGTTCAATGTGGAAACATGGGGAGTCTTCTTCTCATAACATTTGAATATGACGTTATTAGTAATACTACTGTTGACTCCGAATCCACCTTGGAGATCCAGACCCGATTGCTCGGGACCCACCGCCGTCGATACTTTACCAGGCAGCTGCGTAAACCGGATTATACATGGACCAACACATCATACCTGACTGGTGCATTTCTGATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

467

Amino Acids

53.1

Weight (kDa)

6.61

Isoelectric Point (pI)

50.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006385)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g10590 FvH4_7g04900 FvH4_7g04900 FvH4_7g06271
rosa_chinensis	RchiOBHm_Chr2g0124211
rosa_laevigata	RLG00000018039 RLG00000018795 RLG00000022953
rosa_multiflora	Rmu_sc0002968.1_g000024 Rmu_sc0005472.1_g000005 Rmu_sc0005949.1_g000011 Rmu_sc0018337.1_g000004
rosa_roxburghii	Rroxscaffold_2G00120080
rosa_rugosa	Rorug02G0249000
rosa_samantha	Rh2AG239400 Rh2AG308700 Rh2BG252900 Rh2BG253000 Rh2BG253300 Rh2BG317700 Rh2CG243500 Rh2CG295800 Rh2DG247300 Rh2DG247400 Rh2DG332700 Rh5CG553900
rosa_wichuraiana	Rw2G018750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	384
AccI	GTMKAC	1 cut(s)	252
AccII	CGCG	2 cut(s)	372, 741
AclWI	GGATC	5 cut(s)	56, 69, 132, 208, 1282
AcoI	YGGCCR	2 cut(s)	454, 742
AcsI	RAATTY	4 cut(s)	438, 536, 1079, 1169
AcuI	CTGAAG	1 cut(s)	1040
AfiI	CCNNNNNNNGG	4 cut(s)	751, 854, 944, 1187
AgsI	TTSAA	6 cut(s)	235, 293, 955, 1124, 1199, 1238
AjnI	CCWGG	5 cut(s)	330, 528, 540, 817, 1331
AluBI	AGCT	6 cut(s)	380, 576, 613, 1060, 1142, 1339
AluI	AGCT	6 cut(s)	380, 576, 613, 1060, 1142, 1339
Alw21I	GWGCWC	1 cut(s)	1144
Alw26I	GTCTC	1 cut(s)	720
AlwI	GGATC	5 cut(s)	56, 69, 132, 208, 1282
Ama87I	CYCGRG	1 cut(s)	1304
AoxI	GGCC	4 cut(s)	454, 464, 525, 742
ApoI	RAATTY	4 cut(s)	438, 536, 1079, 1169
AspLEI	GCGC	2 cut(s)	372, 727
AspS9I	GGNCC	7 cut(s)	390, 465, 485, 526, 688, 1308, 1362
AsuC2I	CCSGG	1 cut(s)	361
AsuHPI	GGTGA	2 cut(s)	861, 959
AvaI	CYCGRG	1 cut(s)	1304
AvaII	GGWCC	5 cut(s)	390, 485, 688, 1308, 1362
BamHI	GGATCC	1 cut(s)	61
BanII	GRGCYC	1 cut(s)	1144
BarI	GAAGNNNNNNTAC	2 cut(s)	236, 268
BbsI	GAAGAC	2 cut(s)	251, 1211
Bbv12I	GWGCWC	1 cut(s)	1144
BccI	CCATC	6 cut(s)	326, 852, 939, 1044, 1140, 1189
BceAI	ACGGC	4 cut(s)	441, 540, 581, 1302
BcgI	CGANNNNNNTGC	2 cut(s)	409, 443
BciT130I	CCWGG	5 cut(s)	332, 530, 542, 819, 1333
BciVI	GTATCC	1 cut(s)	1009
BclI	TGATCA	1 cut(s)	84
BcnI	CCSGG	1 cut(s)	361
BcoDI	GTCTC	1 cut(s)	720
BfoI	RGCGCY	1 cut(s)	728
BfuI	GTATCC	1 cut(s)	1009
Bme1390I	CCNGG	6 cut(s)	332, 361, 530, 542, 819, 1333
Bme18I	GGWCC	5 cut(s)	390, 485, 688, 1308, 1362
BmeT110I	CYCGRG	1 cut(s)	1304
BmgT120I	GGNCC	7 cut(s)	390, 465, 485, 526, 688, 1308, 1362
BmiI	GGNNCC	7 cut(s)	63, 433, 467, 486, 690, 1309, 1310
BmrFI	CCNGG	6 cut(s)	332, 361, 530, 542, 819, 1333
BmsI	GCATC	1 cut(s)	642
BpiI	GAAGAC	2 cut(s)	251, 1211
BpmI	CTGGAG	1 cut(s)	840
BpuEI	CTTGAG	1 cut(s)	689
BpuMI	CCSGG	1 cut(s)	361
BsaBI	GATNNNNATC	2 cut(s)	83, 205
BsaI	GGTCTC	1 cut(s)	720
BsaJI	CCNNGG	7 cut(s)	360, 393, 528, 529, 739, 907, 1281
BsaWI	WCCGGW	1 cut(s)	1348
Bsc4I	CCNNNNNNNGG	4 cut(s)	751, 854, 944, 1187
Bse118I	RCCGGY	1 cut(s)	449
Bse1I	ACTGG	2 cut(s)	141, 1387
Bse8I	GATNNNNATC	2 cut(s)	83, 205
BseBI	CCWGG	5 cut(s)	332, 530, 542, 819, 1333
BseDI	CCNNGG	7 cut(s)	360, 393, 528, 529, 739, 907, 1281
BseGI	GGATG	5 cut(s)	863, 934, 973, 1036, 1096
BseJI	GATNNNNATC	2 cut(s)	83, 205
BseLI	CCNNNNNNNGG	4 cut(s)	751, 854, 944, 1187
BseMII	CTCAG	1 cut(s)	683
BseNI	ACTGG	2 cut(s)	141, 1387
BseRI	GAGGAG	1 cut(s)	651
BseX3I	CGGCCG	1 cut(s)	454
Bsh1236I	CGCG	2 cut(s)	372, 741
Bsh1285I	CGRYCG	1 cut(s)	457
BshFI	GGCC	4 cut(s)	456, 466, 527, 744
BsiEI	CGRYCG	1 cut(s)	457
BsiHKAI	GWGCWC	1 cut(s)	1144
BsiHKCI	CYCGRG	1 cut(s)	1304
BsiSI	CCGG	3 cut(s)	360, 450, 1349
BslFI	GGGAC	2 cut(s)	18, 1321
BslI	CCNNNNNNNGG	4 cut(s)	751, 854, 944, 1187
BsmAI	GTCTC	1 cut(s)	720
BsmFI	GGGAC	2 cut(s)	18, 1321
BsnI	GGCC	4 cut(s)	456, 466, 527, 744
Bso31I	GGTCTC	1 cut(s)	720
BsoBI	CYCGRG	1 cut(s)	1304
Bsp1286I	GDGCHC	1 cut(s)	1144
Bsp143I	GATC	6 cut(s)	61, 84, 137, 200, 1287, 1395
Bsp19I	CCATGG	1 cut(s)	907
BspANI	GGCC	4 cut(s)	456, 466, 527, 744
BspCNI	CTCAG	1 cut(s)	682
BspFNI	CGCG	2 cut(s)	372, 741
BspLI	GGNNCC	7 cut(s)	63, 433, 467, 486, 690, 1309, 1310
BspPI	GGATC	5 cut(s)	56, 69, 132, 208, 1282
BspTNI	GGTCTC	1 cut(s)	720
BsrFI	RCCGGY	1 cut(s)	449
BsrI	ACTGG	2 cut(s)	141, 1387
BssAI	RCCGGY	1 cut(s)	449
BssECI	CCNNGG	7 cut(s)	360, 393, 528, 529, 739, 907, 1281
BssMI	GATC	6 cut(s)	61, 84, 137, 200, 1287, 1395
BssNAI	GTATAC	1 cut(s)	253
BssT1I	CCWWGG	3 cut(s)	393, 907, 1281
Bst1107I	GTATAC	1 cut(s)	253
Bst2UI	CCWGG	5 cut(s)	332, 530, 542, 819, 1333
Bst4CI	ACNGT	3 cut(s)	250, 1025, 1264
Bst6I	CTCTTC	1 cut(s)	1059
BstC8I	GCNNGC	1 cut(s)	451
BstDEI	CTNAG	3 cut(s)	8, 669, 796
BstDSI	CCRYGG	2 cut(s)	739, 907
BstF5I	GGATG	5 cut(s)	863, 934, 973, 1036, 1096
BstFNI	CGCG	2 cut(s)	372, 741
BstH2I	RGCGCY	1 cut(s)	728
BstHHI	GCGC	2 cut(s)	372, 727
BstKTI	GATC	6 cut(s)	64, 87, 140, 203, 1290, 1398
BstMAI	GTCTC	1 cut(s)	720
BstMBI	GATC	6 cut(s)	61, 84, 137, 200, 1287, 1395
BstMCI	CGRYCG	1 cut(s)	457
BstMWI	GCNNNNNNNGC	5 cut(s)	105, 108, 111, 114, 158
BstNI	CCWGG	5 cut(s)	332, 530, 542, 819, 1333
BstSCI	CCNGG	6 cut(s)	330, 359, 528, 540, 817, 1331
BstUI	CGCG	2 cut(s)	372, 741
BstV2I	GAAGAC	2 cut(s)	251, 1211
BstX2I	RGATCY	3 cut(s)	61, 137, 1287
BstYI	RGATCY	3 cut(s)	61, 137, 1287
BstZ17I	GTATAC	1 cut(s)	253
BstZI	CGGCCG	1 cut(s)	454
BsuI	GTATCC	1 cut(s)	1009
BsuRI	GGCC	4 cut(s)	456, 466, 527, 744
BtgI	CCRYGG	2 cut(s)	739, 907
BtsCI	GGATG	5 cut(s)	863, 934, 973, 1036, 1096
BtsI	GCAGTG	1 cut(s)	762
BtsIMutI	CAGTG	1 cut(s)	762
Cac8I	GCNNGC	1 cut(s)	451
CfoI	GCGC	2 cut(s)	372, 727
Cfr10I	RCCGGY	1 cut(s)	449
Cfr13I	GGNCC	7 cut(s)	390, 465, 485, 526, 688, 1308, 1362
Cfr42I	CCGCGG	1 cut(s)	742
CseI	GACGC	1 cut(s)	756
CviAII	CATG	6 cut(s)	168, 655, 908, 1012, 1210, 1359
DdeI	CTNAG	3 cut(s)	8, 669, 796
DpnI	GATC	6 cut(s)	63, 86, 139, 202, 1289, 1397
DpnII	GATC	6 cut(s)	61, 84, 137, 200, 1287, 1395
EaeI	YGGCCR	2 cut(s)	454, 742
EagI	CGGCCG	1 cut(s)	454
Eam1104I	CTCTTC	1 cut(s)	1059
EarI	CTCTTC	1 cut(s)	1059
EciI	GGCGGA	1 cut(s)	914
Ecl136II	GAGCTC	1 cut(s)	1142
EclXI	CGGCCG	1 cut(s)	454
Eco130I	CCWWGG	3 cut(s)	393, 907, 1281
Eco24I	GRGCYC	1 cut(s)	1144
Eco31I	GGTCTC	1 cut(s)	720
Eco47I	GGWCC	5 cut(s)	390, 485, 688, 1308, 1362
Eco52I	CGGCCG	1 cut(s)	454
Eco53kI	GAGCTC	1 cut(s)	1142
Eco57I	CTGAAG	1 cut(s)	1040
Eco88I	CYCGRG	1 cut(s)	1304
EcoICRI	GAGCTC	1 cut(s)	1142
EcoO109I	RGGNCCY	3 cut(s)	465, 485, 1308
EcoRII	CCWGG	5 cut(s)	330, 528, 540, 817, 1331
EcoT14I	CCWWGG	3 cut(s)	393, 907, 1281
EcoT38I	GRGCYC	1 cut(s)	1144
ErhI	CCWWGG	3 cut(s)	393, 907, 1281
FaeI	CATG	6 cut(s)	171, 658, 911, 1015, 1213, 1362
FalI	AAGNNNNNCTT	2 cut(s)	1140, 1172
FaqI	GGGAC	2 cut(s)	18, 1321
FatI	CATG	6 cut(s)	167, 654, 907, 1011, 1209, 1358
FauI	CCCGC	1 cut(s)	477
FbaI	TGATCA	1 cut(s)	84
FblI	GTMKAC	1 cut(s)	252
FokI	GGATG	5 cut(s)	870, 921, 960, 1023, 1103
FriOI	GRGCYC	1 cut(s)	1144
GlaI	GCGC	2 cut(s)	371, 726
GsuI	CTGGAG	1 cut(s)	840
HaeII	RGCGCY	1 cut(s)	728
HaeIII	GGCC	4 cut(s)	456, 466, 527, 744
HapII	CCGG	3 cut(s)	360, 450, 1349
HgaI	GACGC	1 cut(s)	756
HhaI	GCGC	2 cut(s)	372, 727
Hin1II	CATG	6 cut(s)	171, 658, 911, 1015, 1213, 1362
Hin6I	GCGC	2 cut(s)	370, 725
HinP1I	GCGC	2 cut(s)	370, 725
HincII	GTYRAC	1 cut(s)	1267
HindII	GTYRAC	1 cut(s)	1267
HpaII	CCGG	3 cut(s)	360, 450, 1349
HphI	GGTGA	2 cut(s)	861, 959
Hpy166II	GTNNAC	4 cut(s)	253, 590, 1267, 1346
Hpy188I	TCNGA	8 cut(s)	66, 193, 205, 211, 754, 1139, 1273, 1395
Hpy8I	GTNNAC	4 cut(s)	253, 590, 1267, 1346
Hpy99I	CGWCG	1 cut(s)	1323
HpyAV	CCTTC	6 cut(s)	52, 172, 456, 882, 902, 1117
HpyCH4III	ACNGT	3 cut(s)	250, 1025, 1264
HpyCH4IV	ACGT	2 cut(s)	477, 1245
HpyCH4V	TGCA	6 cut(s)	53, 420, 633, 986, 1165, 1388
HpyF10VI	GCNNNNNNNGC	5 cut(s)	105, 108, 111, 114, 158
HpyF3I	CTNAG	3 cut(s)	8, 669, 796
HpySE526I	ACGT	2 cut(s)	477, 1245
Hsp92II	CATG	6 cut(s)	171, 658, 911, 1015, 1213, 1362
HspAI	GCGC	2 cut(s)	370, 725
KflI	GGGWCCC	1 cut(s)	1308
KroI	GCCGGC	1 cut(s)	449
KroNI	GCCGGC	1 cut(s)	451
Ksp22I	TGATCA	1 cut(s)	84
KspI	CCGCGG	1 cut(s)	742
Kzo9I	GATC	6 cut(s)	61, 84, 137, 200, 1287, 1395
LmnI	GCTCC	4 cut(s)	437, 610, 783, 1139
LweI	GCATC	1 cut(s)	642
MaeII	ACGT	2 cut(s)	477, 1245
MaeIII	GTNAC	1 cut(s)	867
MalI	GATC	6 cut(s)	63, 86, 139, 202, 1289, 1397
MboI	GATC	6 cut(s)	61, 84, 137, 200, 1287, 1395
MboII	GAAGA	8 cut(s)	147, 187, 256, 910, 1046, 1165, 1211, 1214
MfeI	CAATTG	1 cut(s)	415
MflI	RGATCY	3 cut(s)	61, 137, 1287
MhlI	GDGCHC	1 cut(s)	1144
MlyI	GAGTC	7 cut(s)	278, 283, 652, 758, 875, 1225, 1262
MmeI	TCCRAC	1 cut(s)	732
MreI	CGCCGGCG	1 cut(s)	449
MroNI	GCCGGC	1 cut(s)	449
MseI	TTAA	2 cut(s)	336, 399
MspA1I	CMGCKG	3 cut(s)	741, 1060, 1339
MspI	CCGG	3 cut(s)	360, 450, 1349
MspR9I	CCNGG	6 cut(s)	332, 361, 530, 542, 819, 1333
MunI	CAATTG	1 cut(s)	415
MvaI	CCWGG	5 cut(s)	332, 530, 542, 819, 1333
MvnI	CGCG	2 cut(s)	372, 741
MwoI	GCNNNNNNNGC	5 cut(s)	105, 108, 111, 114, 158
NaeI	GCCGGC	1 cut(s)	451
NciI	CCSGG	1 cut(s)	361
NcoI	CCATGG	1 cut(s)	907
NdeII	GATC	6 cut(s)	61, 84, 137, 200, 1287, 1395
NgoMIV	GCCGGC	1 cut(s)	449
NlaIII	CATG	6 cut(s)	171, 658, 911, 1015, 1213, 1362
NlaIV	GGNNCC	7 cut(s)	63, 433, 467, 486, 690, 1309, 1310
NmuCI	GTSAC	1 cut(s)	867
PasI	CCCWGGG	1 cut(s)	529
PdiI	GCCGGC	1 cut(s)	451
PfeI	GAWTC	5 cut(s)	194, 206, 301, 1028, 1274
PleI	GAGTC	7 cut(s)	277, 282, 652, 757, 874, 1224, 1262
PpsI	GAGTC	7 cut(s)	277, 282, 652, 757, 874, 1224, 1262
PpuMI	RGGWCCY	2 cut(s)	485, 1308
PsiI	TTATAA	1 cut(s)	384
Psp124BI	GAGCTC	1 cut(s)	1144
Psp5II	RGGWCCY	2 cut(s)	485, 1308
Psp6I	CCWGG	5 cut(s)	330, 528, 540, 817, 1331
PspGI	CCWGG	5 cut(s)	330, 528, 540, 817, 1331
PspN4I	GGNNCC	7 cut(s)	63, 433, 467, 486, 690, 1309, 1310
PspPI	GGNCC	7 cut(s)	390, 465, 485, 526, 688, 1308, 1362
PspPPI	RGGWCCY	2 cut(s)	485, 1308
PsuI	RGATCY	3 cut(s)	61, 137, 1287
PvuII	CAGCTG	2 cut(s)	1060, 1339
SacI	GAGCTC	1 cut(s)	1144
SacII	CCGCGG	1 cut(s)	742
SaqAI	TTAA	2 cut(s)	336, 399
Sau3AI	GATC	6 cut(s)	61, 84, 137, 200, 1287, 1395
Sau96I	GGNCC	7 cut(s)	390, 465, 485, 526, 688, 1308, 1362
SchI	GAGTC	7 cut(s)	278, 283, 652, 758, 875, 1225, 1262
ScrFI	CCNGG	6 cut(s)	332, 361, 530, 542, 819, 1333
SduI	GDGCHC	1 cut(s)	1144
SfaNI	GCATC	1 cut(s)	642
Sfr303I	CCGCGG	1 cut(s)	742
SgrAI	CRCCGGYG	1 cut(s)	449
SgrBI	CCGCGG	1 cut(s)	742
SinI	GGWCC	5 cut(s)	390, 485, 688, 1308, 1362
SmlI	CTYRAG	1 cut(s)	704
SmoI	CTYRAG	1 cut(s)	704
SstI	GAGCTC	1 cut(s)	1144
StyD4I	CCNGG	6 cut(s)	330, 359, 528, 540, 817, 1331
StyI	CCWWGG	3 cut(s)	393, 907, 1281
TaaI	ACNGT	3 cut(s)	250, 1025, 1264
TaiI	ACGT	2 cut(s)	480, 1248
TaqI	TCGA	4 cut(s)	272, 636, 1084, 1321
TauI	GCSGC	3 cut(s)	20, 456, 744
TfiI	GAWTC	5 cut(s)	194, 206, 301, 1028, 1274
Tru1I	TTAA	2 cut(s)	336, 399
Tru9I	TTAA	2 cut(s)	336, 399
TscAI	CASTG	1 cut(s)	769
TseFI	GTSAC	1 cut(s)	867
Tsp45I	GTSAC	1 cut(s)	867
TspDTI	ATGAA	3 cut(s)	200, 1000, 1092
TspRI	CASTG	1 cut(s)	769
VpaK11BI	GGWCC	5 cut(s)	390, 485, 688, 1308, 1362
XapI	RAATTY	4 cut(s)	438, 536, 1079, 1169
XmiI	GTMKAC	1 cut(s)	252

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.