FvH4_7g06271

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0006385
Physical Location & Seq
Reverse (-)
6369634 .. 6371092
1459 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g06271.t1

Sequence Viewer

Length: 1275 bp
ATGAGGACAGCGGCGGCAAGTGCATTGCAGAAAATTAGCGTGAGAAGATCCAGTACTACTTTAGCGGCAGCAACAGCAGGCAAGAGCTTATACTTATGTTTCAATGAGTTTAGTAGATGCGGTGGTAAACATTACGTGAATCAAGTTGTTCGCTCGATCAGAATGGGTAGTGATGATGATGAGGAGGAGGAGTACTTGCGGGAGGCAGCTTATAAGAGGTCCGAGAATGGCTGGAACTTTTCCTGTCGCTTCGGCTCCCAAATTCTTTTCCCTTTCAGAGCGCGTGGTTGTGTTGGTGTTACACATGTCAGTTCGCTTGATACGTCGGCCCGGCCGCTCAAGTATTCCTCCCGGACGAAACTAACCTTCTCCCGTCCTAAGAATAGGCCAGTGCTGGGGGAGCTCAACCGCAAACTCTACTGTATCGACACCAACCCCGAAAGGATTGGGGGGATTGATCCTCAAGCTCGCCCTTTTGAGGTTTTAGATCCCGAAAACGACCTCAAGTGGCGGTCTCTGGATGCTCCTCCCTTTATGGAGAGAGACACGTATCGCTTCTTTGCCTCATTTTTGGAGGGGAGCAACAAAATCTTAGGTTGGGCGTGCAAACAGCCTGGAGGTTATTTGGGTAAGCTGCCTGCTGGAGAACAAGCGTGCGAGCCGCCTGAGCACCCTGGAGTGTTTTGCTTTGATGCAACCAAGCCTGAAAATGGATGGACCGAGTCATCTTTCAGTTTGGGTAACACCCTTCCCTCTCTTGGCTACCAAATTAGGACTCCTATCTTCATCCAAAACCATCATCCCAATCTTGGTGCTTTCCACCTATTGTTTAACTATGATCCTATCGATGACCCTCTCCGTGTATCCGCCTTTTTCATGTCAGACAATTGTGATAATTTTCATTGCATCATATCCACACCTCTCAAGCTGCCAGATTTGTGTTATGAATATAACGAATTCAGAGAACCACATTCCGACACCATCTGTACTGATTTTAAATTTGTCCATCTCGGAGCTCAAAAAGTCTGCCTTGTTTTGAACAAATTCTTCTGTGATGGTCATTTTCAAGATAGAAACACGGGGAAGATTCTTCTCATAACATTTGAATATGACATTATTCCTACTACTGTCAAGGACTACTGCTTCAAATCAACAGTCCAGATCCAAACCCGATTGCCGAGGACCCGCCGCTTTCGATACCATTCCAGGAAGCTGCGTAAACCAGATGATACACGCACCACCAGTTTTTGCATGACTGGTGCATTTCTGCTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

425

Amino Acids

48.44

Weight (kDa)

8.69

Isoelectric Point (pI)

40.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 213
AccBSI CCGCTC 1 cut(s) 337
AccII CGCG 1 cut(s) 283
AclWI GGATC 5 cut(s) 42, 452, 482, 833, 1156
AcoI YGGCCR 1 cut(s) 332
AcsI RAATTY 4 cut(s) 261, 956, 998, 1043
AfaI GTAC 3 cut(s) 55, 194, 988
AfiI CCNNNNNNNGG 5 cut(s) 395, 478, 710, 758, 809
AflIII ACRYGT 2 cut(s) 304, 546
AgsI TTSAA 5 cut(s) 103, 1039, 1067, 1106, 1147
AjnI CCWGG 3 cut(s) 613, 673, 1205
AluBI AGCT 8 cut(s) 87, 209, 403, 467, 634, 928, 1016, 1213
AluI AGCT 8 cut(s) 87, 209, 403, 467, 634, 928, 1016, 1213
Alw21I GWGCWC 3 cut(s) 405, 672, 1018
Alw26I GTCTC 2 cut(s) 519, 537
AlwI GGATC 5 cut(s) 42, 452, 482, 833, 1156
AoxI GGCC 3 cut(s) 327, 332, 386
ApeKI GCWGC 5 cut(s) 68, 206, 634, 928, 1213
ApoI RAATTY 4 cut(s) 261, 956, 998, 1043
ArsI GACNNNNNNTTYG 2 cut(s) 1140, 1172
Asp700I GAANNNNTTC 1 cut(s) 1043
AspLEI GCGC 1 cut(s) 283
AspS9I GGNCC 4 cut(s) 219, 328, 717, 1182
AsuC2I CCSGG 2 cut(s) 331, 352
AvaII GGWCC 3 cut(s) 219, 717, 1182
BanII GRGCYC 2 cut(s) 405, 1018
BarI GAAGNNNNNNTAC 2 cut(s) 37, 69
Bbv12I GWGCWC 3 cut(s) 405, 672, 1018
BbvI GCAGC 5 cut(s) 80, 218, 621, 915, 1200
BccI CCATC 5 cut(s) 708, 804, 989, 1014, 1049
BciT130I CCWGG 3 cut(s) 615, 675, 1207
BciVI GTATCC 1 cut(s) 874
BcnI CCSGG 2 cut(s) 331, 352
BcoDI GTCTC 2 cut(s) 519, 537
BfuI GTATCC 1 cut(s) 874
BmcAI AGTACT 2 cut(s) 55, 194
Bme1390I CCNGG 5 cut(s) 331, 352, 615, 675, 1207
Bme18I GGWCC 3 cut(s) 219, 717, 1182
BmgT120I GGNCC 4 cut(s) 219, 328, 717, 1182
BmiI GGNNCC 2 cut(s) 256, 1184
BmrFI CCNGG 5 cut(s) 331, 352, 615, 675, 1207
BmsI GCATC 4 cut(s) 107, 511, 682, 915
BpmI CTGGAG 3 cut(s) 636, 663, 696
Bpu10I CCTNAGC 1 cut(s) 666
BpuEI CTTGAG 4 cut(s) 323, 447, 488, 908
BpuMI CCSGG 2 cut(s) 331, 352
Bsa29I ATCGAT 1 cut(s) 846
BsaAI YACGTR 2 cut(s) 136, 549
BsaI GGTCTC 1 cut(s) 519
BsaJI CCNNGG 2 cut(s) 673, 1178
BsaXI ACNNNNNCTCC 2 cut(s) 176, 206
Bsc4I CCNNNNNNNGG 5 cut(s) 395, 478, 710, 758, 809
Bse1I ACTGG 4 cut(s) 51, 389, 1242, 1261
Bse3DI GCAATG 2 cut(s) 23, 901
BseBI CCWGG 3 cut(s) 615, 675, 1207
BseCI ATCGAT 1 cut(s) 846
BseDI CCNNGG 2 cut(s) 673, 1178
BseGI GGATG 4 cut(s) 526, 719, 786, 799
BseLI CCNNNNNNNGG 5 cut(s) 395, 478, 710, 758, 809
BseMI GCAATG 2 cut(s) 23, 901
BseMII CTCAG 1 cut(s) 657
BseNI ACTGG 4 cut(s) 51, 389, 1242, 1261
BseRI GAGGAG 4 cut(s) 197, 200, 203, 516
BseX3I CGGCCG 1 cut(s) 332
BseXI GCAGC 5 cut(s) 80, 218, 621, 915, 1200
BseYI CCCAGC 1 cut(s) 394
Bsh1236I CGCG 1 cut(s) 283
Bsh1285I CGRYCG 1 cut(s) 335
BshFI GGCC 3 cut(s) 329, 334, 388
BshVI ATCGAT 1 cut(s) 846
BsiEI CGRYCG 1 cut(s) 335
BsiHKAI GWGCWC 3 cut(s) 405, 672, 1018
BsiSI CCGG 2 cut(s) 331, 352
BslI CCNNNNNNNGG 5 cut(s) 395, 478, 710, 758, 809
BsmAI GTCTC 2 cut(s) 519, 537
BsnI GGCC 3 cut(s) 329, 334, 388
Bso31I GGTCTC 1 cut(s) 519
Bsp1286I GDGCHC 3 cut(s) 405, 672, 1018
Bsp143I GATC 6 cut(s) 47, 156, 457, 487, 838, 1161
BspANI GGCC 3 cut(s) 329, 334, 388
BspCNI CTCAG 1 cut(s) 658
BspDI ATCGAT 1 cut(s) 846
BspFNI CGCG 1 cut(s) 283
BspLI GGNNCC 2 cut(s) 256, 1184
BspPI GGATC 5 cut(s) 42, 452, 482, 833, 1156
BspTNI GGTCTC 1 cut(s) 519
BsrBI CCGCTC 1 cut(s) 337
BsrDI GCAATG 2 cut(s) 23, 901
BsrI ACTGG 4 cut(s) 51, 389, 1242, 1261
BssECI CCNNGG 2 cut(s) 673, 1178
BssMI GATC 6 cut(s) 47, 156, 457, 487, 838, 1161
Bst2UI CCWGG 3 cut(s) 615, 675, 1207
Bst4CI ACNGT 3 cut(s) 422, 1129, 1156
BstBAI YACGTR 2 cut(s) 136, 549
BstC8I GCNNGC 6 cut(s) 79, 469, 604, 639, 655, 659
BstDEI CTNAG 3 cut(s) 378, 592, 666
BstF5I GGATG 4 cut(s) 526, 719, 786, 799
BstFNI CGCG 1 cut(s) 283
BstHHI GCGC 1 cut(s) 283
BstKTI GATC 6 cut(s) 50, 159, 460, 490, 841, 1164
BstMAI GTCTC 2 cut(s) 519, 537
BstMBI GATC 6 cut(s) 47, 156, 457, 487, 838, 1161
BstMCI CGRYCG 1 cut(s) 335
BstMWI GCNNNNNNNGC 4 cut(s) 20, 74, 400, 667
BstNI CCWGG 3 cut(s) 615, 675, 1207
BstNSI RCATGY 1 cut(s) 308
BstSCI CCNGG 5 cut(s) 329, 350, 613, 673, 1205
BstUI CGCG 1 cut(s) 283
BstV1I GCAGC 5 cut(s) 80, 218, 621, 915, 1200
BstX2I RGATCY 3 cut(s) 47, 487, 1161
BstYI RGATCY 3 cut(s) 47, 487, 1161
BstZI CGGCCG 1 cut(s) 332
Bsu15I ATCGAT 1 cut(s) 846
BsuI GTATCC 1 cut(s) 874
BsuRI GGCC 3 cut(s) 329, 334, 388
BsuTUI ATCGAT 1 cut(s) 846
BtsCI GGATG 4 cut(s) 526, 719, 786, 799
BtsIMutI CAGTG 1 cut(s) 396
Cac8I GCNNGC 6 cut(s) 79, 469, 604, 639, 655, 659
CfoI GCGC 1 cut(s) 283
Cfr13I GGNCC 4 cut(s) 219, 328, 717, 1182
ClaI ATCGAT 1 cut(s) 846
Csp6I GTAC 3 cut(s) 54, 193, 987
CviAII CATG 3 cut(s) 305, 877, 1252
CviQI GTAC 3 cut(s) 54, 193, 987
DdeI CTNAG 3 cut(s) 378, 592, 666
DpnI GATC 6 cut(s) 49, 158, 459, 489, 840, 1163
DpnII GATC 6 cut(s) 47, 156, 457, 487, 838, 1161
DraI TTTAAA 1 cut(s) 997
EaeI YGGCCR 1 cut(s) 332
EagI CGGCCG 1 cut(s) 332
EciI GGCGGA 1 cut(s) 856
Ecl136II GAGCTC 2 cut(s) 403, 1016
EclXI CGGCCG 1 cut(s) 332
Eco24I GRGCYC 2 cut(s) 405, 1018
Eco31I GGTCTC 1 cut(s) 519
Eco47I GGWCC 3 cut(s) 219, 717, 1182
Eco52I CGGCCG 1 cut(s) 332
Eco53kI GAGCTC 2 cut(s) 403, 1016
EcoICRI GAGCTC 2 cut(s) 403, 1016
EcoO109I RGGNCCY 1 cut(s) 1182
EcoRI GAATTC 1 cut(s) 956
EcoRII CCWGG 3 cut(s) 613, 673, 1205
EcoT38I GRGCYC 2 cut(s) 405, 1018
FaeI CATG 3 cut(s) 308, 880, 1255
FalI AAGNNNNNCTT 2 cut(s) 1014, 1046
FatI CATG 3 cut(s) 304, 876, 1251
FauI CCCGC 2 cut(s) 192, 1193
FokI GGATG 4 cut(s) 533, 726, 773, 786
FriOI GRGCYC 2 cut(s) 405, 1018
GlaI GCGC 1 cut(s) 282
GsaI CCCAGC 1 cut(s) 398
GsuI CTGGAG 3 cut(s) 636, 663, 696
HaeIII GGCC 3 cut(s) 329, 334, 388
HapII CCGG 2 cut(s) 331, 352
HhaI GCGC 1 cut(s) 283
Hin1II CATG 3 cut(s) 308, 880, 1255
Hin6I GCGC 1 cut(s) 281
HinP1I GCGC 1 cut(s) 281
HinfI GANTC 4 cut(s) 139, 722, 775, 1087
HpaII CCGG 2 cut(s) 331, 352
Hpy166II GTNNAC 2 cut(s) 128, 1220
Hpy188I TCNGA 7 cut(s) 161, 223, 278, 883, 962, 976, 1013
Hpy188III TCNNGA 4 cut(s) 491, 518, 1067, 1159
Hpy8I GTNNAC 2 cut(s) 128, 1220
Hpy99I CGWCG 1 cut(s) 328
HpyAV CCTTC 2 cut(s) 376, 758
HpyCH4III ACNGT 3 cut(s) 422, 1129, 1156
HpyCH4IV ACGT 3 cut(s) 135, 323, 548
HpyCH4V TGCA 7 cut(s) 23, 28, 606, 695, 906, 1251, 1262
HpyF10VI GCNNNNNNNGC 4 cut(s) 20, 74, 400, 667
HpyF3I CTNAG 3 cut(s) 378, 592, 666
HpySE526I ACGT 3 cut(s) 135, 323, 548
Hsp92II CATG 3 cut(s) 308, 880, 1255
HspAI GCGC 1 cut(s) 281
Kzo9I GATC 6 cut(s) 47, 156, 457, 487, 838, 1161
LmnI GCTCC 5 cut(s) 260, 400, 529, 579, 1013
Lsp1109I GCAGC 5 cut(s) 80, 218, 621, 915, 1200
LweI GCATC 4 cut(s) 107, 511, 682, 915
MaeII ACGT 3 cut(s) 135, 323, 548
MaeIII GTNAC 2 cut(s) 298, 740
MalI GATC 6 cut(s) 49, 158, 459, 489, 840, 1163
MbiI CCGCTC 1 cut(s) 337
MboI GATC 6 cut(s) 47, 156, 457, 487, 838, 1161
MboII GAAGA 5 cut(s) 57, 775, 1039, 1082, 1096
MfeI CAATTG 1 cut(s) 886
MflI RGATCY 3 cut(s) 47, 487, 1161
MhlI GDGCHC 3 cut(s) 405, 672, 1018
MluCI AATT 8 cut(s) 33, 261, 768, 886, 895, 956, 998, 1043
MlyI GAGTC 2 cut(s) 731, 769
MmeI TCCRAC 1 cut(s) 999
MroXI GAANNNNTTC 1 cut(s) 1043
MseI TTAA 2 cut(s) 831, 996
MspA1I CMGCKG 1 cut(s) 11
MspI CCGG 2 cut(s) 331, 352
MspR9I CCNGG 5 cut(s) 331, 352, 615, 675, 1207
MunI CAATTG 1 cut(s) 886
MvaI CCWGG 3 cut(s) 615, 675, 1207
MvnI CGCG 1 cut(s) 283
MwoI GCNNNNNNNGC 4 cut(s) 20, 74, 400, 667
NciI CCSGG 2 cut(s) 331, 352
NdeII GATC 6 cut(s) 47, 156, 457, 487, 838, 1161
NlaIII CATG 3 cut(s) 308, 880, 1255
NlaIV GGNNCC 2 cut(s) 256, 1184
NmeAIII GCCGAG 1 cut(s) 1203
NspI RCATGY 1 cut(s) 308
PciI ACATGT 1 cut(s) 304
PcsI WCGNNNNNNNCGW 1 cut(s) 320
PdmI GAANNNNTTC 1 cut(s) 1043
PfeI GAWTC 2 cut(s) 139, 1087
PflFI GACNNNGTC 1 cut(s) 721
PfoI TCCNGGA 2 cut(s) 350, 1205
PleI GAGTC 2 cut(s) 730, 769
PpsI GAGTC 2 cut(s) 730, 769
Ppu21I YACGTR 2 cut(s) 136, 549
PpuMI RGGWCCY 1 cut(s) 1182
PscI ACATGT 1 cut(s) 304
PsiI TTATAA 1 cut(s) 213
Psp124BI GAGCTC 2 cut(s) 405, 1018
Psp5II RGGWCCY 1 cut(s) 1182
Psp6I CCWGG 3 cut(s) 613, 673, 1205
PspFI CCCAGC 1 cut(s) 394
PspGI CCWGG 3 cut(s) 613, 673, 1205
PspN4I GGNNCC 2 cut(s) 256, 1184
PspPI GGNCC 4 cut(s) 219, 328, 717, 1182
PspPPI RGGWCCY 1 cut(s) 1182
PsuI RGATCY 3 cut(s) 47, 487, 1161
PsyI GACNNNGTC 1 cut(s) 721
RsaI GTAC 3 cut(s) 55, 194, 988
RsaNI GTAC 3 cut(s) 54, 193, 987
SacI GAGCTC 2 cut(s) 405, 1018
SaqAI TTAA 2 cut(s) 831, 996
Sau3AI GATC 6 cut(s) 47, 156, 457, 487, 838, 1161
Sau96I GGNCC 4 cut(s) 219, 328, 717, 1182
ScaI AGTACT 2 cut(s) 55, 194
SchI GAGTC 2 cut(s) 731, 769
ScrFI CCNGG 5 cut(s) 331, 352, 615, 675, 1207
SduI GDGCHC 3 cut(s) 405, 672, 1018
SfaNI GCATC 4 cut(s) 107, 511, 682, 915
SinI GGWCC 3 cut(s) 219, 717, 1182
SmlI CTYRAG 4 cut(s) 338, 462, 503, 923
SmoI CTYRAG 4 cut(s) 338, 462, 503, 923
Sse9I AATT 8 cut(s) 33, 261, 768, 886, 895, 956, 998, 1043
SstI GAGCTC 2 cut(s) 405, 1018
StyD4I CCNGG 5 cut(s) 329, 350, 613, 673, 1205
TaaI ACNGT 3 cut(s) 422, 1129, 1156
TaiI ACGT 3 cut(s) 138, 326, 551
TaqI TCGA 4 cut(s) 155, 426, 846, 1195
TaqII GACCGA 1 cut(s) 734
TasI AATT 8 cut(s) 33, 261, 768, 886, 895, 956, 998, 1043
TatI WGTACW 3 cut(s) 53, 192, 986
TauI GCSGC 6 cut(s) 14, 17, 68, 337, 664, 1191
TfiI GAWTC 2 cut(s) 139, 1087
Tru1I TTAA 2 cut(s) 831, 996
Tru9I TTAA 2 cut(s) 831, 996
TscAI CASTG 1 cut(s) 396
TseI GCWGC 5 cut(s) 68, 206, 634, 928, 1213
TspDTI ATGAA 4 cut(s) 775, 865, 890, 960
TspGWI ACGGA 1 cut(s) 848
TspRI CASTG 1 cut(s) 396
Tth111I GACNNNGTC 1 cut(s) 721
VpaK11BI GGWCC 3 cut(s) 219, 717, 1182
XapI RAATTY 4 cut(s) 261, 956, 998, 1043
XceI RCATGY 1 cut(s) 308
XmnI GAANNNNTTC 1 cut(s) 1043
ZrmI AGTACT 2 cut(s) 55, 194
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.