Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0006385

Physical Location & Seq

Genomic Coordinates Reverse (-)

77088506 .. 77089288

Gene Structure 783 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG553900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

ATGCTTTTCAGCGGCGGCGCCAGAACACCACGGCCAAACGTCGGGGGTCCAAGTATTACGCATAGAGAAATTTGTTGGTTTGAGGCAAGCGATCCCAACCCGAAGTTCGAAGTTTCCTCCCCAACGAAAACCAAAATCAAGAGTTTTTCAACAGGTAATAAACAAAAGGTCGTGCTAGGTGAGCTGGACCGCAAACTCTATTGCATCGCCAACAACTCCACAATGCCGACTACTCCCCCTCCATGCGAGGCTTTTGAGGTTTTCGACCCCCGACAACCCGAAATGGAGGCGCCTCCATTTATTGGCCAAGAGACTGACAACTTCTCTGCTGCATTTGCTGACAGGAACAACAAGAGCAGCCAGGAGTGTTTTGCTTCAACGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

127

Amino Acids

14.01

Weight (kDa)

5.83

Isoelectric Point (pI)

44.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006385)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g10590 FvH4_7g04900 FvH4_7g04900 FvH4_7g06271
rosa_chinensis	RchiOBHm_Chr2g0124211
rosa_laevigata	RLG00000018039 RLG00000018795 RLG00000022953
rosa_multiflora	Rmu_sc0002968.1_g000024 Rmu_sc0005472.1_g000005 Rmu_sc0005949.1_g000011 Rmu_sc0018337.1_g000004
rosa_roxburghii	Rroxscaffold_2G00120080
rosa_rugosa	Rorug02G0249000
rosa_samantha	Rh2AG239400 Rh2AG308700 Rh2BG252900 Rh2BG253000 Rh2BG253300 Rh2BG317700 Rh2CG243500 Rh2CG295800 Rh2DG247300 Rh2DG247400 Rh2DG332700 Rh5CG553900
rosa_wichuraiana	Rw2G018750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	17, 289
AccB7I	CCANNNNNTGG	1 cut(s)	302
AciI	CCGC	3 cut(s)	12, 15, 190
AclWI	GGATC	1 cut(s)	86
AcoI	YGGCCR	2 cut(s)	32, 304
AcsI	RAATTY	1 cut(s)	69
AcyI	GRCGYC	2 cut(s)	18, 290
AfiI	CCNNNNNNNGG	2 cut(s)	41, 302
AgsI	TTSAA	2 cut(s)	150, 378
AjnI	CCWGG	1 cut(s)	360
AjuI	GAANNNNNNNTTGG	2 cut(s)	89, 121
AluBI	AGCT	1 cut(s)	184
AluI	AGCT	1 cut(s)	184
Alw26I	GTCTC	1 cut(s)	305
AlwI	GGATC	1 cut(s)	86
AoxI	GGCC	2 cut(s)	32, 304
ApeKI	GCWGC	2 cut(s)	329, 357
ApoI	RAATTY	1 cut(s)	69
AspLEI	GCGC	2 cut(s)	20, 292
AspS9I	GGNCC	2 cut(s)	47, 187
AsuHPI	GGTGA	1 cut(s)	191
AsuII	TTCGAA	1 cut(s)	108
AvaII	GGWCC	2 cut(s)	47, 187
BalI	TGGCCA	1 cut(s)	306
BanI	GGYRCC	2 cut(s)	17, 289
BbvI	GCAGC	2 cut(s)	316, 369
BceAI	ACGGC	1 cut(s)	47
BciT130I	CCWGG	1 cut(s)	362
BcoDI	GTCTC	1 cut(s)	305
BfaI	CTAG	1 cut(s)	176
BfoI	RGCGCY	2 cut(s)	21, 293
BisI	GCNGC	4 cut(s)	13, 16, 330, 358
BlsI	GCNGC	4 cut(s)	14, 17, 331, 359
Bme1390I	CCNGG	1 cut(s)	362
Bme18I	GGWCC	2 cut(s)	47, 187
BmgT120I	GGNCC	2 cut(s)	47, 187
BmiI	GGNNCC	3 cut(s)	19, 48, 291
BmrFI	CCNGG	1 cut(s)	362
BmsI	GCATC	1 cut(s)	213
Bpu14I	TTCGAA	1 cut(s)	108
BsaHI	GRCGYC	2 cut(s)	18, 290
BsaJI	CCNNGG	1 cut(s)	29
BsaXI	ACNNNNNCTCC	2 cut(s)	223, 253
Bsc4I	CCNNNNNNNGG	2 cut(s)	41, 302
BseBI	CCWGG	1 cut(s)	362
BseDI	CCNNGG	1 cut(s)	29
BseLI	CCNNNNNNNGG	2 cut(s)	41, 302
BseXI	GCAGC	2 cut(s)	316, 369
BshFI	GGCC	2 cut(s)	34, 306
BshNI	GGYRCC	2 cut(s)	17, 289
BslI	CCNNNNNNNGG	2 cut(s)	41, 302
BsmAI	GTCTC	1 cut(s)	305
BsnI	GGCC	2 cut(s)	34, 306
Bsp119I	TTCGAA	1 cut(s)	108
Bsp143I	GATC	1 cut(s)	91
BspACI	CCGC	3 cut(s)	12, 15, 190
BspANI	GGCC	2 cut(s)	34, 306
BspLI	GGNNCC	3 cut(s)	19, 48, 291
BspPI	GGATC	1 cut(s)	86
BspT104I	TTCGAA	1 cut(s)	108
BspT107I	GGYRCC	2 cut(s)	17, 289
BssECI	CCNNGG	1 cut(s)	29
BssMI	GATC	1 cut(s)	91
BssNI	GRCGYC	2 cut(s)	18, 290
Bst2UI	CCWGG	1 cut(s)	362
BstACI	GRCGYC	2 cut(s)	18, 290
BstBI	TTCGAA	1 cut(s)	108
BstC8I	GCNNGC	1 cut(s)	88
BstDSI	CCRYGG	1 cut(s)	29
BstH2I	RGCGCY	2 cut(s)	21, 293
BstHHI	GCGC	2 cut(s)	20, 292
BstKTI	GATC	1 cut(s)	94
BstMAI	GTCTC	1 cut(s)	305
BstMBI	GATC	1 cut(s)	91
BstMWI	GCNNNNNNNGC	2 cut(s)	181, 335
BstNI	CCWGG	1 cut(s)	362
BstSCI	CCNGG	1 cut(s)	360
BstV1I	GCAGC	2 cut(s)	316, 369
BsuRI	GGCC	2 cut(s)	34, 306
BtgI	CCRYGG	1 cut(s)	29
BtgZI	GCGATG	1 cut(s)	190
Cac8I	GCNNGC	1 cut(s)	88
CfoI	GCGC	2 cut(s)	20, 292
Cfr13I	GGNCC	2 cut(s)	47, 187
CviAII	CATG	1 cut(s)	243
CviJI	RGCY	5 cut(s)	34, 184, 251, 306, 360
CviKI_1	RGCY	5 cut(s)	34, 184, 251, 306, 360
DinI	GGCGCC	2 cut(s)	19, 291
DpnI	GATC	1 cut(s)	93
DpnII	GATC	1 cut(s)	91
EaeI	YGGCCR	2 cut(s)	32, 304
Eco47I	GGWCC	2 cut(s)	47, 187
EcoRII	CCWGG	1 cut(s)	360
EgeI	GGCGCC	2 cut(s)	19, 291
EheI	GGCGCC	2 cut(s)	19, 291
FaeI	CATG	1 cut(s)	246
FaiI	YATR	2 cut(s)	63, 244
FatI	CATG	1 cut(s)	242
Fnu4HI	GCNGC	4 cut(s)	13, 16, 330, 358
Fsp4HI	GCNGC	4 cut(s)	13, 16, 330, 358
FspBI	CTAG	1 cut(s)	176
GlaI	GCGC	2 cut(s)	19, 291
GluI	GCNGC	4 cut(s)	13, 16, 330, 358
HaeII	RGCGCY	2 cut(s)	21, 293
HaeIII	GGCC	2 cut(s)	34, 306
HhaI	GCGC	2 cut(s)	20, 292
Hin1I	GRCGYC	2 cut(s)	18, 290
Hin1II	CATG	1 cut(s)	246
Hin6I	GCGC	2 cut(s)	18, 290
HinP1I	GCGC	2 cut(s)	18, 290
HphI	GGTGA	1 cut(s)	191
Hpy188III	TCNNGA	1 cut(s)	139
Hpy99I	CGWCG	1 cut(s)	44
HpyCH4IV	ACGT	2 cut(s)	39, 380
HpyCH4V	TGCA	2 cut(s)	204, 332
HpyF10VI	GCNNNNNNNGC	2 cut(s)	181, 335
HpySE526I	ACGT	2 cut(s)	39, 380
Hsp92I	GRCGYC	2 cut(s)	18, 290
Hsp92II	CATG	1 cut(s)	246
HspAI	GCGC	2 cut(s)	18, 290
KasI	GGCGCC	2 cut(s)	17, 289
Kzo9I	GATC	1 cut(s)	91
LpnPI	CCDG	6 cut(s)	34, 138, 170, 328, 347, 374
Lsp1109I	GCAGC	2 cut(s)	316, 369
LweI	GCATC	1 cut(s)	213
MaeI	CTAG	1 cut(s)	176
MaeII	ACGT	2 cut(s)	39, 380
MalI	GATC	1 cut(s)	93
MboI	GATC	1 cut(s)	91
MlsI	TGGCCA	1 cut(s)	306
MluCI	AATT	1 cut(s)	69
MluNI	TGGCCA	1 cut(s)	306
Mly113I	GGCGCC	2 cut(s)	18, 290
MnlI	CCTC	7 cut(s)	76, 127, 241, 249, 250, 280, 303
Mox20I	TGGCCA	1 cut(s)	306
MscI	TGGCCA	1 cut(s)	306
Msp20I	TGGCCA	1 cut(s)	306
MspA1I	CMGCKG	1 cut(s)	12
MspR9I	CCNGG	1 cut(s)	362
MvaI	CCWGG	1 cut(s)	362
MwoI	GCNNNNNNNGC	2 cut(s)	181, 335
NarI	GGCGCC	2 cut(s)	18, 290
NdeII	GATC	1 cut(s)	91
NlaIII	CATG	1 cut(s)	246
NlaIV	GGNNCC	3 cut(s)	19, 48, 291
NspV	TTCGAA	1 cut(s)	108
PflMI	CCANNNNNTGG	1 cut(s)	302
PkrI	GCNGC	4 cut(s)	14, 17, 331, 359
PluTI	GGCGCC	2 cut(s)	21, 293
Psp6I	CCWGG	1 cut(s)	360
PspGI	CCWGG	1 cut(s)	360
PspN4I	GGNNCC	3 cut(s)	19, 48, 291
PspPI	GGNCC	2 cut(s)	47, 187
SatI	GCNGC	4 cut(s)	13, 16, 330, 358
Sau3AI	GATC	1 cut(s)	91
Sau96I	GGNCC	2 cut(s)	47, 187
ScrFI	CCNGG	1 cut(s)	362
SetI	ASST	7 cut(s)	42, 157, 171, 181, 186, 261, 383
SfaNI	GCATC	1 cut(s)	213
SfoI	GGCGCC	2 cut(s)	19, 291
SfuI	TTCGAA	1 cut(s)	108
SinI	GGWCC	2 cut(s)	47, 187
Sse9I	AATT	1 cut(s)	69
SsiI	CCGC	3 cut(s)	12, 15, 190
SspDI	GGCGCC	2 cut(s)	17, 289
SspMI	CTAG	1 cut(s)	176
StyD4I	CCNGG	1 cut(s)	360
TaiI	ACGT	2 cut(s)	42, 383
TaqI	TCGA	2 cut(s)	108, 264
TasI	AATT	1 cut(s)	69
TauI	GCSGC	2 cut(s)	15, 18
TseI	GCWGC	2 cut(s)	329, 357
Van91I	CCANNNNNTGG	1 cut(s)	302
VpaK11BI	GGWCC	2 cut(s)	47, 187
XapI	RAATTY	1 cut(s)	69
XspI	CTAG	1 cut(s)	176

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.