Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0004843

Physical Location & Seq

Genomic Coordinates Reverse (-)

13786702 .. 13787394

Gene Structure 693 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g15720.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGGAAGGGATCAACTCATCATCATCATCTGCCGGAGGAAATAAGCAAAGCCGAAAGGCAACGCTAAAGAAAGCGCTCTTTCGTCATTTCAGATCAGCTCGGATTCATCACAAGAACAAAAGCAGCAGGAGTAATAATCTACTAACGAAGACCACAGCGATTGCAAGGGCGAGCGGTCAGGAGGGACTGGAGCGTATCAATGTACTTTCCCAGTCGACTCAGGAAAACAATGGGGTGGTGAGGATGAAGATTCTGGTGAGAAAGGAAGATTTGGATAAAGTTTTGGAAATCATGAGGAATAACAACAATAGTGACCACAATGACACGGAAAATTGTGTTCATGAGGAAGAAGAACAAGTATCATTGTTGATAGAGGAGCGCCTAAATCTGTTGCGCAGAAAGCATAGGTGCCACAATTCTTGGAGTCCTGCTCTGCAAACTATCCAGGAAGATATTTTAGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

155

Amino Acids

17.55

Weight (kDa)

9.64

Isoelectric Point (pI)

73.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004843)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g15710 FvH4_2g15711 FvH4_2g15720 FvH4_2g15721
prunus_persica	Prupe.8G169600_v2.0.a1
pyrus_communis	pycom05g12070 pycom10g11060
rosa_laevigata	RLG00000013172 RLG00000013173 RLG00000013174 RLG00000013175
rosa_multiflora	Rmu_sc0002080.1_g000015
rosa_roxburghii	Rroxscaffold_7G00189200 Rroxscaffold_7G00189210
rosa_rugosa	Rorug06G0121000 Rorug06G0121100 Rorug06G0121200.1
rosa_samantha	Rh6AG229900 Rh6AG230000 Rh6AG230200 Rh6AG230300 Rh6BG235000 Rh6BG235100 Rh6BG235200 Rh6CG237000 Rh6CG237100 Rh6CG237300 Rh6DG228800 Rh6DG228900 Rh6DG229000 Rh6DG229100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	395
AccB1I	GGYRCC	1 cut(s)	408
AccBSI	CCGCTC	1 cut(s)	174
AccI	GTMKAC	1 cut(s)	215
AciI	CCGC	1 cut(s)	174
AclWI	GGATC	1 cut(s)	17
AfaI	GTAC	1 cut(s)	204
AfeI	AGCGCT	1 cut(s)	75
AjnI	CCWGG	1 cut(s)	444
AluBI	AGCT	1 cut(s)	98
AluI	AGCT	1 cut(s)	98
AlwI	GGATC	1 cut(s)	17
Aor51HI	AGCGCT	1 cut(s)	75
ApeKI	GCWGC	1 cut(s)	123
AspLEI	GCGC	3 cut(s)	76, 381, 396
AsuHPI	GGTGA	2 cut(s)	250, 268
BanI	GGYRCC	1 cut(s)	408
BbsI	GAAGAC	1 cut(s)	155
BbvI	GCAGC	1 cut(s)	135
BciT130I	CCWGG	1 cut(s)	446
BfaI	CTAG	1 cut(s)	463
BfoI	RGCGCY	2 cut(s)	77, 382
BisI	GCNGC	1 cut(s)	124
BlsI	GCNGC	1 cut(s)	125
Bme1390I	CCNGG	1 cut(s)	446
BmiI	GGNNCC	1 cut(s)	410
BmrFI	CCNGG	1 cut(s)	446
BmrI	ACTGGG	1 cut(s)	205
BmuI	ACTGGG	1 cut(s)	205
BpiI	GAAGAC	1 cut(s)	155
BplI	GAGNNNNNCTC	2 cut(s)	415, 447
BpmI	CTGGAG	1 cut(s)	209
Bse1I	ACTGG	2 cut(s)	192, 211
BseBI	CCWGG	1 cut(s)	446
BseGI	GGATG	1 cut(s)	249
BseMII	CTCAG	1 cut(s)	233
BseNI	ACTGG	2 cut(s)	192, 211
BseRI	GAGGAG	1 cut(s)	389
BseXI	GCAGC	1 cut(s)	135
BshNI	GGYRCC	1 cut(s)	408
BsiSI	CCGG	1 cut(s)	33
BslFI	GGGAC	1 cut(s)	198
BsmFI	GGGAC	1 cut(s)	198
Bsp143I	GATC	2 cut(s)	9, 92
BspACI	CCGC	1 cut(s)	174
BspCNI	CTCAG	1 cut(s)	232
BspHI	TCATGA	2 cut(s)	291, 340
BspLI	GGNNCC	1 cut(s)	410
BspPI	GGATC	1 cut(s)	17
BspT107I	GGYRCC	1 cut(s)	408
BsrBI	CCGCTC	1 cut(s)	174
BsrI	ACTGG	2 cut(s)	192, 211
BssMI	GATC	2 cut(s)	9, 92
Bst2UI	CCWGG	1 cut(s)	446
BstC8I	GCNNGC	1 cut(s)	172
BstDEI	CTNAG	1 cut(s)	219
BstF5I	GGATG	1 cut(s)	249
BstH2I	RGCGCY	2 cut(s)	77, 382
BstHHI	GCGC	3 cut(s)	76, 381, 396
BstKTI	GATC	2 cut(s)	12, 95
BstMBI	GATC	2 cut(s)	9, 92
BstMWI	GCNNNNNNNGC	1 cut(s)	400
BstNI	CCWGG	1 cut(s)	446
BstSCI	CCNGG	1 cut(s)	444
BstV1I	GCAGC	1 cut(s)	135
BstV2I	GAAGAC	1 cut(s)	155
BtsCI	GGATG	1 cut(s)	249
Cac8I	GCNNGC	1 cut(s)	172
CciI	TCATGA	2 cut(s)	291, 340
CfoI	GCGC	3 cut(s)	76, 381, 396
Csp6I	GTAC	1 cut(s)	203
CspCI	CAANNNNNGTGG	4 cut(s)	142, 177, 401, 436
CviAII	CATG	2 cut(s)	292, 341
CviJI	RGCY	3 cut(s)	51, 98, 461
CviKI_1	RGCY	3 cut(s)	51, 98, 461
CviQI	GTAC	1 cut(s)	203
DdeI	CTNAG	1 cut(s)	219
DpnI	GATC	2 cut(s)	11, 94
DpnII	GATC	2 cut(s)	9, 92
Eco47III	AGCGCT	1 cut(s)	75
EcoRII	CCWGG	1 cut(s)	444
FaeI	CATG	2 cut(s)	295, 344
FaiI	YATR	3 cut(s)	293, 342, 405
FaqI	GGGAC	1 cut(s)	198
FatI	CATG	2 cut(s)	291, 340
FblI	GTMKAC	1 cut(s)	215
Fnu4HI	GCNGC	1 cut(s)	124
FokI	GGATG	1 cut(s)	256
Fsp4HI	GCNGC	1 cut(s)	124
FspBI	CTAG	1 cut(s)	463
FspI	TGCGCA	1 cut(s)	395
GlaI	GCGC	3 cut(s)	75, 380, 395
GluI	GCNGC	1 cut(s)	124
GsuI	CTGGAG	1 cut(s)	209
HaeII	RGCGCY	2 cut(s)	77, 382
HapII	CCGG	1 cut(s)	33
HhaI	GCGC	3 cut(s)	76, 381, 396
Hin1II	CATG	2 cut(s)	295, 344
Hin6I	GCGC	3 cut(s)	74, 379, 394
HinP1I	GCGC	3 cut(s)	74, 379, 394
HincII	GTYRAC	1 cut(s)	216
HindII	GTYRAC	1 cut(s)	216
HinfI	GANTC	4 cut(s)	103, 217, 250, 424
HpaII	CCGG	1 cut(s)	33
HphI	GGTGA	2 cut(s)	250, 268
Hpy166II	GTNNAC	1 cut(s)	216
Hpy188I	TCNGA	2 cut(s)	92, 102
Hpy188III	TCNNGA	4 cut(s)	179, 221, 292, 341
Hpy8I	GTNNAC	1 cut(s)	216
HpyCH4V	TGCA	2 cut(s)	164, 436
HpyF10VI	GCNNNNNNNGC	1 cut(s)	400
HpyF3I	CTNAG	1 cut(s)	219
Hsp92II	CATG	2 cut(s)	295, 344
HspAI	GCGC	3 cut(s)	74, 379, 394
Kzo9I	GATC	2 cut(s)	9, 92
LmnI	GCTCC	2 cut(s)	190, 376
Lsp1109I	GCAGC	1 cut(s)	135
MaeI	CTAG	1 cut(s)	463
MaeIII	GTNAC	1 cut(s)	311
MalI	GATC	2 cut(s)	11, 94
MbiI	CCGCTC	1 cut(s)	174
MboI	GATC	2 cut(s)	9, 92
MboII	GAAGA	6 cut(s)	160, 259, 278, 359, 362, 461
MluCI	AATT	2 cut(s)	331, 415
MlyI	GAGTC	2 cut(s)	211, 433
MnlI	CCTC	6 cut(s)	29, 175, 234, 288, 337, 367
MspI	CCGG	1 cut(s)	33
MspR9I	CCNGG	1 cut(s)	446
MvaI	CCWGG	1 cut(s)	446
MwoI	GCNNNNNNNGC	1 cut(s)	400
NdeII	GATC	2 cut(s)	9, 92
NlaIII	CATG	2 cut(s)	295, 344
NlaIV	GGNNCC	1 cut(s)	410
NmuCI	GTSAC	1 cut(s)	311
NsbI	TGCGCA	1 cut(s)	395
PagI	TCATGA	2 cut(s)	291, 340
PfeI	GAWTC	2 cut(s)	103, 250
PfoI	TCCNGGA	1 cut(s)	444
PkrI	GCNGC	1 cut(s)	125
PleI	GAGTC	2 cut(s)	211, 432
PpsI	GAGTC	2 cut(s)	211, 432
Psp6I	CCWGG	1 cut(s)	444
PspGI	CCWGG	1 cut(s)	444
PspN4I	GGNNCC	1 cut(s)	410
RsaI	GTAC	1 cut(s)	204
RsaNI	GTAC	1 cut(s)	203
SalI	GTCGAC	1 cut(s)	214
SatI	GCNGC	1 cut(s)	124
Sau3AI	GATC	2 cut(s)	9, 92
SchI	GAGTC	2 cut(s)	211, 433
ScrFI	CCNGG	1 cut(s)	446
SetI	ASST	2 cut(s)	100, 410
Sse9I	AATT	2 cut(s)	331, 415
SsiI	CCGC	1 cut(s)	174
SspMI	CTAG	1 cut(s)	463
StyD4I	CCNGG	1 cut(s)	444
TaqI	TCGA	1 cut(s)	215
TasI	AATT	2 cut(s)	331, 415
TatI	WGTACW	1 cut(s)	202
TfiI	GAWTC	2 cut(s)	103, 250
TseFI	GTSAC	1 cut(s)	311
TseI	GCWGC	1 cut(s)	123
Tsp45I	GTSAC	1 cut(s)	311
TspDTI	ATGAA	3 cut(s)	95, 260, 329
TspGWI	ACGGA	1 cut(s)	341
XmiI	GTMKAC	1 cut(s)	215
XspI	CTAG	1 cut(s)	463

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.